Wall clock time and date at job start Wed Apr 1 2020 03:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47518 * 111.00222 * 2 1 4 4 C 1.55020 * 107.08363 * 237.94494 * 3 2 1 5 5 H 1.09002 * 112.62246 * 216.07214 * 4 3 2 6 6 C 1.52965 * 107.09973 * 92.64348 * 4 3 2 7 7 C 1.52726 * 110.87119 * 194.14328 * 6 4 3 8 8 C 1.53020 * 108.48867 * 63.70223 * 7 6 4 9 9 N 1.46791 * 107.78975 * 302.00022 * 8 7 6 10 10 C 1.34782 * 119.53314 * 231.94138 * 9 8 7 11 11 O 1.21277 * 120.00202 * 179.73044 * 10 9 8 12 12 C 1.50705 * 119.99762 * 359.72880 * 10 9 8 13 13 C 1.50702 * 109.46977 * 179.97438 * 12 10 9 14 14 C 1.38318 * 119.96704 * 269.98167 * 13 12 10 15 15 C 1.38278 * 120.14029 * 180.02562 * 14 13 12 16 16 C 1.38123 * 120.06830 * 359.74488 * 15 14 13 17 17 C 1.38864 * 119.92510 * 0.50162 * 16 15 14 18 18 O 1.35751 * 120.06323 * 179.76881 * 17 16 15 19 19 C 1.34825 * 117.00341 * 5.24382 * 18 17 16 20 20 H 1.08003 * 120.00224 * 354.91962 * 19 18 17 21 21 C 1.38660 * 120.00426 * 174.91400 * 19 18 17 22 22 N 1.31548 * 120.00380 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99675 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46812 * 269.99662 * 23 21 19 25 25 H 1.48503 * 109.47283 * 29.99213 * 23 21 19 26 26 H 1.48493 * 109.47363 * 149.99769 * 23 21 19 27 27 C 1.38081 * 119.96131 * 90.00192 * 13 12 10 28 28 C 1.45036 * 120.94162 * 51.66735 * 9 8 7 29 29 H 1.08997 * 109.86606 * 192.77297 * 28 9 8 30 30 C 1.48098 * 110.99941 * 239.14955 * 2 1 3 31 31 H 1.09003 * 109.47064 * 60.00379 * 1 2 3 32 32 H 1.09000 * 109.47587 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47212 * 300.00550 * 1 2 3 34 34 H 1.08997 * 109.91519 * 118.58560 * 3 2 1 35 35 H 1.08996 * 109.91141 * 357.30595 * 3 2 1 36 36 H 1.08998 * 109.19909 * 314.50631 * 6 4 3 37 37 H 1.09001 * 109.19882 * 73.83345 * 6 4 3 38 38 H 1.08998 * 109.67804 * 183.55628 * 7 6 4 39 39 H 1.08998 * 109.67950 * 304.09848 * 7 6 4 40 40 H 1.09001 * 109.77296 * 182.38791 * 8 7 6 41 41 H 1.08996 * 109.68087 * 61.56385 * 8 7 6 42 42 H 1.09000 * 109.47006 * 59.99941 * 12 10 9 43 43 H 1.08996 * 109.46819 * 299.99995 * 12 10 9 44 44 H 1.08001 * 119.93135 * 359.97438 * 14 13 12 45 45 H 1.08001 * 119.96619 * 179.97438 * 15 14 13 46 46 H 1.08001 * 120.03574 * 180.27929 * 16 15 14 47 47 H 0.96997 * 120.00341 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.03665 * 359.95606 * 27 13 12 49 49 H 1.09001 * 110.45650 * 27.00711 * 30 2 1 50 50 H 1.08996 * 110.45609 * 264.44648 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9977 1.3772 0.0000 4 6 2.8951 1.5205 -1.2559 5 1 3.7668 2.1504 -1.0787 6 6 2.0132 2.0696 -2.3786 7 6 2.7017 1.9205 -3.7337 8 6 2.8844 0.4292 -4.0237 9 7 3.6731 -0.1474 -2.9281 10 6 4.7736 -0.8720 -3.2116 11 8 5.4342 -1.3482 -2.3129 12 6 5.1832 -1.0906 -4.6453 13 6 6.4367 -1.9260 -4.6879 14 6 7.6765 -1.3130 -4.6696 15 6 8.8290 -2.0760 -4.7090 16 6 8.7454 -3.4537 -4.7615 17 6 7.5022 -4.0719 -4.7852 18 8 7.4167 -5.4255 -4.8415 19 6 8.5722 -6.1156 -4.7624 20 1 9.5152 -5.5895 -4.7418 21 6 8.5501 -7.5010 -4.7072 22 7 9.6775 -8.1744 -4.6305 23 14 6.9192 -8.4111 -4.7432 24 1 6.4246 -8.5957 -3.3552 25 1 5.9295 -7.6228 -5.5206 26 1 7.1070 -9.7383 -5.3823 27 6 6.3464 -3.3026 -4.7455 28 6 3.2883 0.0565 -1.5447 29 1 4.1020 -0.2458 -0.8855 30 6 1.9997 -0.7090 -1.1870 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.5885 1.5481 0.8999 35 1 1.1751 2.0906 -0.0482 36 1 1.0702 1.5231 -2.3935 37 1 1.8128 3.1249 -2.1934 38 1 2.0856 2.3738 -4.5102 39 1 3.6760 2.4084 -3.7060 40 1 3.4128 0.2992 -4.9682 41 1 1.9102 -0.0570 -4.0740 42 1 5.3724 -0.1277 -5.1199 43 1 4.3838 -1.6068 -5.1768 44 1 7.7446 -0.2360 -4.6252 45 1 9.7956 -1.5944 -4.6950 46 1 9.6459 -4.0493 -4.7877 47 1 9.6621 -9.1435 -4.5922 48 1 5.3781 -3.7807 -4.7594 49 1 1.2867 -0.6605 -2.0101 50 1 2.2285 -1.7458 -0.9407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819718039.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:36 Heat of formation + Delta-G solvation = -23.321097 kcal Electronic energy + Delta-G solvation = -30342.586974 eV Core-core repulsion = 26335.466304 eV Total energy + Delta-G solvation = -4007.120669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.17789 -39.41973 -38.66863 -36.67784 -36.27041 -33.34069 -32.50043 -32.26560 -31.50380 -29.45831 -28.87185 -27.16907 -26.77259 -25.15247 -24.55441 -22.93705 -21.86450 -21.41172 -21.19162 -20.15556 -18.68645 -17.66665 -17.45962 -17.08076 -16.42001 -16.06426 -15.61532 -15.17625 -15.10737 -14.73037 -14.57700 -14.43967 -14.14768 -13.90122 -13.71461 -13.64947 -13.53054 -13.30028 -13.05416 -13.02168 -12.53127 -12.43421 -12.17384 -12.06280 -11.96955 -11.86194 -11.66774 -11.62461 -11.29668 -11.25382 -11.09535 -10.79747 -10.72662 -10.71114 -10.65788 -10.11567 -9.73631 -9.33859 -8.83313 -8.82049 -8.63958 -8.10078 -7.30809 -6.35932 -4.02494 2.04089 2.33261 2.65173 2.79553 3.25701 3.30385 3.43993 3.73181 4.00968 4.28555 4.28787 4.33815 4.45735 4.47897 4.59194 4.73787 4.75322 4.85214 4.90600 4.96760 5.03243 5.07421 5.12278 5.13575 5.16384 5.19332 5.28906 5.34022 5.40522 5.46201 5.47779 5.51545 5.57950 5.67559 5.71721 5.72751 5.82245 5.88272 5.93705 6.16461 6.29640 6.35140 6.56478 6.59536 6.65940 6.83350 7.14207 7.22618 7.25734 7.36726 7.65611 7.86232 8.09801 8.20805 8.99722 9.62802 10.71994 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.002524 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.749396 B =11091.617041 C =12177.840243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.530 5.530 3 C 0.045 3.955 4 C -0.118 4.118 5 H 0.093 0.907 6 C -0.113 4.113 7 C -0.135 4.135 8 C 0.104 3.896 9 N -0.608 5.608 10 C 0.515 3.485 11 O -0.512 6.512 12 C -0.092 4.092 13 C -0.036 4.036 14 C -0.188 4.188 15 C -0.076 4.076 16 C -0.217 4.217 17 C 0.160 3.840 18 O -0.219 6.219 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.882 5.882 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.260 1.260 26 H -0.283 1.283 27 C -0.174 4.174 28 C 0.139 3.861 29 H 0.112 0.888 30 C 0.034 3.966 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.133 0.867 47 H 0.279 0.721 48 H 0.113 0.887 49 H 0.050 0.950 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.069 23.314 2.627 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.254 5.254 3 C -0.083 4.083 4 C -0.138 4.138 5 H 0.112 0.888 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.019 4.019 9 N -0.342 5.342 10 C 0.303 3.697 11 O -0.386 6.386 12 C -0.132 4.132 13 C -0.036 4.036 14 C -0.207 4.207 15 C -0.094 4.094 16 C -0.236 4.236 17 C 0.109 3.891 18 O -0.125 6.125 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.184 1.184 26 H -0.208 1.208 27 C -0.193 4.193 28 C 0.033 3.967 29 H 0.130 0.870 30 C -0.095 4.095 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.150 0.850 47 H 0.089 0.911 48 H 0.131 0.869 49 H 0.068 0.932 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.642 22.394 3.561 29.355 hybrid contribution -0.866 -0.032 -0.687 1.106 sum -19.508 22.362 2.874 29.814 Atomic orbital electron populations 1.22556 0.87499 1.02238 1.00469 1.63625 1.08019 1.13994 1.39765 1.23058 0.97864 0.89564 0.97826 1.22688 0.98868 0.96811 0.95476 0.88831 1.21554 0.98243 1.01076 0.94233 1.21826 1.01828 0.96224 0.97486 1.21766 0.96405 0.93403 0.90281 1.47503 1.27330 1.53530 1.05838 1.20855 0.79467 0.77440 0.91953 1.90765 1.52016 1.47505 1.48273 1.20631 0.97690 1.01329 0.93509 1.18661 0.92771 0.92308 0.99905 1.20401 0.91983 0.98286 1.09998 1.20733 0.97398 0.93399 0.97881 1.21299 0.98150 0.94849 1.09351 1.19000 0.93130 0.83829 0.93171 1.83564 1.34694 1.13531 1.80689 1.20763 0.83982 0.89792 1.51817 0.87655 1.24450 0.98451 0.95357 0.95744 1.69642 1.25856 1.08268 1.48233 0.86190 0.83117 0.78530 0.79112 1.19884 1.18415 1.20845 1.19925 0.96545 0.92159 1.10668 1.21385 0.97935 0.93727 0.83633 0.87048 1.23262 0.95686 0.99397 0.91148 0.95580 0.91260 0.91270 0.90128 0.92136 0.92187 0.91554 0.90479 0.90994 0.88913 0.91469 0.88320 0.88299 0.87801 0.87186 0.84987 0.91127 0.86884 0.93153 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.06 0.55 0.70 16 2 N -0.53 -4.85 5.45 -239.31 -1.30 -6.16 16 3 C 0.04 0.34 6.27 -2.42 -0.02 0.33 16 4 C -0.12 -0.92 3.59 -88.88 -0.32 -1.24 16 5 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 6 C -0.11 -0.69 4.65 -26.89 -0.13 -0.81 16 7 C -0.14 -0.76 6.09 -26.86 -0.16 -0.93 16 8 C 0.10 0.72 6.05 -3.87 -0.02 0.70 16 9 N -0.61 -6.38 2.74 -165.49 -0.45 -6.83 16 10 C 0.51 7.27 7.65 -10.98 -0.08 7.18 16 11 O -0.51 -9.80 15.35 5.56 0.09 -9.71 16 12 C -0.09 -1.15 4.14 -29.03 -0.12 -1.27 16 13 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 14 C -0.19 -3.30 9.70 -39.54 -0.38 -3.68 16 15 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 16 C -0.22 -4.91 9.17 -39.39 -0.36 -5.28 16 17 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 18 O -0.22 -6.00 8.59 0.06 0.00 -6.00 16 19 C -0.39 -11.26 9.95 30.89 0.31 -10.96 16 20 H 0.11 3.12 5.44 -52.48 -0.29 2.83 16 21 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 22 N -0.88 -26.06 13.96 55.48 0.77 -25.28 16 23 Si 0.90 22.28 28.62 -169.99 -4.86 17.41 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.26 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.17 -3.61 9.65 -39.40 -0.38 -3.99 16 28 C 0.14 1.46 3.04 -67.46 -0.20 1.26 16 29 H 0.11 1.52 6.95 -51.93 -0.36 1.16 16 30 C 0.03 0.34 5.92 -2.59 -0.02 0.32 16 31 H 0.03 0.16 7.77 -51.93 -0.40 -0.24 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.38 7.19 -51.93 -0.37 0.01 16 36 H 0.06 0.38 6.86 -51.93 -0.36 0.02 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.53 5.81 -51.93 -0.30 0.23 16 41 H 0.07 0.42 7.61 -51.93 -0.40 0.03 16 42 H 0.10 0.94 7.54 -51.93 -0.39 0.55 16 43 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 44 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.13 3.11 5.64 -52.49 -0.30 2.81 16 47 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 48 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 49 H 0.05 0.46 6.58 -51.93 -0.34 0.11 16 50 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -33.64 390.44 -10.13 -43.77 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.70 Total: 2.19 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.55 Total: -15.28 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.98 Total: -38.27 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.86 Total: 17.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.64 -10.13 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819718039.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.454 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds