Wall clock time and date at job start Wed Apr 1 2020 03:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47518 * 111.00222 * 2 1 4 4 C 1.55020 * 107.08363 * 237.94494 * 3 2 1 5 5 H 1.09002 * 112.62246 * 216.07214 * 4 3 2 6 6 C 1.52965 * 107.09973 * 92.64348 * 4 3 2 7 7 C 1.52726 * 110.87119 * 194.14328 * 6 4 3 8 8 C 1.53020 * 108.48867 * 63.70223 * 7 6 4 9 9 N 1.46791 * 107.78975 * 302.00022 * 8 7 6 10 10 C 1.34782 * 119.53314 * 231.94138 * 9 8 7 11 11 O 1.21277 * 120.00202 * 179.73044 * 10 9 8 12 12 C 1.50705 * 119.99762 * 359.72880 * 10 9 8 13 13 C 1.50702 * 109.46977 * 179.97438 * 12 10 9 14 14 C 1.38318 * 119.96704 * 269.98167 * 13 12 10 15 15 C 1.38278 * 120.14029 * 180.02562 * 14 13 12 16 16 C 1.38123 * 120.06830 * 359.74488 * 15 14 13 17 17 C 1.38864 * 119.92510 * 0.50162 * 16 15 14 18 18 O 1.35751 * 120.06323 * 179.76881 * 17 16 15 19 19 C 1.34825 * 117.00341 * 5.24382 * 18 17 16 20 20 H 1.08003 * 120.00224 * 354.91962 * 19 18 17 21 21 C 1.38660 * 120.00426 * 174.91400 * 19 18 17 22 22 N 1.31548 * 120.00380 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99675 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46812 * 269.99662 * 23 21 19 25 25 H 1.48503 * 109.47283 * 29.99213 * 23 21 19 26 26 H 1.48493 * 109.47363 * 149.99769 * 23 21 19 27 27 C 1.38081 * 119.96131 * 90.00192 * 13 12 10 28 28 C 1.45036 * 120.94162 * 51.66735 * 9 8 7 29 29 H 1.08997 * 109.86606 * 192.77297 * 28 9 8 30 30 C 1.48098 * 110.99941 * 239.14955 * 2 1 3 31 31 H 1.09003 * 109.47064 * 60.00379 * 1 2 3 32 32 H 1.09000 * 109.47587 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47212 * 300.00550 * 1 2 3 34 34 H 1.08997 * 109.91519 * 118.58560 * 3 2 1 35 35 H 1.08996 * 109.91141 * 357.30595 * 3 2 1 36 36 H 1.08998 * 109.19909 * 314.50631 * 6 4 3 37 37 H 1.09001 * 109.19882 * 73.83345 * 6 4 3 38 38 H 1.08998 * 109.67804 * 183.55628 * 7 6 4 39 39 H 1.08998 * 109.67950 * 304.09848 * 7 6 4 40 40 H 1.09001 * 109.77296 * 182.38791 * 8 7 6 41 41 H 1.08996 * 109.68087 * 61.56385 * 8 7 6 42 42 H 1.09000 * 109.47006 * 59.99941 * 12 10 9 43 43 H 1.08996 * 109.46819 * 299.99995 * 12 10 9 44 44 H 1.08001 * 119.93135 * 359.97438 * 14 13 12 45 45 H 1.08001 * 119.96619 * 179.97438 * 15 14 13 46 46 H 1.08001 * 120.03574 * 180.27929 * 16 15 14 47 47 H 0.96997 * 120.00341 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.03665 * 359.95606 * 27 13 12 49 49 H 1.09001 * 110.45650 * 27.00711 * 30 2 1 50 50 H 1.08996 * 110.45609 * 264.44648 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9977 1.3772 0.0000 4 6 2.8951 1.5205 -1.2559 5 1 3.7668 2.1504 -1.0787 6 6 2.0132 2.0696 -2.3786 7 6 2.7017 1.9205 -3.7337 8 6 2.8844 0.4292 -4.0237 9 7 3.6731 -0.1474 -2.9281 10 6 4.7736 -0.8720 -3.2116 11 8 5.4342 -1.3482 -2.3129 12 6 5.1832 -1.0906 -4.6453 13 6 6.4367 -1.9260 -4.6879 14 6 7.6765 -1.3130 -4.6696 15 6 8.8290 -2.0760 -4.7090 16 6 8.7454 -3.4537 -4.7615 17 6 7.5022 -4.0719 -4.7852 18 8 7.4167 -5.4255 -4.8415 19 6 8.5722 -6.1156 -4.7624 20 1 9.5152 -5.5895 -4.7418 21 6 8.5501 -7.5010 -4.7072 22 7 9.6775 -8.1744 -4.6305 23 14 6.9192 -8.4111 -4.7432 24 1 6.4246 -8.5957 -3.3552 25 1 5.9295 -7.6228 -5.5206 26 1 7.1070 -9.7383 -5.3823 27 6 6.3464 -3.3026 -4.7455 28 6 3.2883 0.0565 -1.5447 29 1 4.1020 -0.2458 -0.8855 30 6 1.9997 -0.7090 -1.1870 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.5885 1.5481 0.8999 35 1 1.1751 2.0906 -0.0482 36 1 1.0702 1.5231 -2.3935 37 1 1.8128 3.1249 -2.1934 38 1 2.0856 2.3738 -4.5102 39 1 3.6760 2.4084 -3.7060 40 1 3.4128 0.2992 -4.9682 41 1 1.9102 -0.0570 -4.0740 42 1 5.3724 -0.1277 -5.1199 43 1 4.3838 -1.6068 -5.1768 44 1 7.7446 -0.2360 -4.6252 45 1 9.7956 -1.5944 -4.6950 46 1 9.6459 -4.0493 -4.7877 47 1 9.6621 -9.1435 -4.5922 48 1 5.3781 -3.7807 -4.7594 49 1 1.2867 -0.6605 -2.0101 50 1 2.2285 -1.7458 -0.9407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819718039.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:35 Heat of formation + Delta-G solvation = -45.644269 kcal Electronic energy + Delta-G solvation = -30343.554979 eV Core-core repulsion = 26335.466304 eV Total energy + Delta-G solvation = -4008.088675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99457 -40.93109 -39.90254 -38.28387 -37.09945 -34.49621 -34.11104 -33.56795 -32.30740 -31.09580 -29.78149 -28.31868 -27.43422 -27.16783 -25.29800 -23.65099 -23.31850 -22.72593 -21.97080 -21.31455 -19.70972 -19.44138 -18.80464 -18.36981 -17.25339 -16.91395 -16.81090 -16.77473 -16.21244 -15.79914 -15.74435 -15.64825 -15.35255 -15.12502 -14.99222 -14.65547 -14.46465 -14.31163 -14.16073 -14.09462 -13.98918 -13.68845 -13.62129 -13.06529 -12.91336 -12.69763 -12.62323 -12.53585 -12.48994 -12.42146 -12.32349 -12.17024 -11.93030 -11.83204 -11.66713 -11.32228 -11.29741 -10.95007 -10.83490 -9.68064 -9.64320 -9.31184 -9.07132 -8.51240 -6.23909 0.47339 0.69288 1.28212 1.33661 1.49394 1.60959 1.91991 2.26699 2.75691 2.98337 3.08287 3.15156 3.37915 3.62419 3.67461 3.82198 3.93353 3.96389 4.06122 4.06313 4.18483 4.25260 4.28694 4.39046 4.39964 4.47137 4.52069 4.54026 4.57327 4.61967 4.65490 4.68765 4.69641 4.86553 4.91118 4.92654 4.96581 4.98630 5.09232 5.15068 5.19891 5.24678 5.38361 5.41251 5.58851 5.63848 5.71607 5.75875 5.89410 5.90654 6.05373 6.22854 6.36833 6.83102 7.19884 7.58071 8.60710 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.002524 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.749396 B =11091.617041 C =12177.840243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.550 5.550 3 C 0.047 3.953 4 C -0.110 4.110 5 H 0.091 0.909 6 C -0.110 4.110 7 C -0.130 4.130 8 C 0.093 3.907 9 N -0.596 5.596 10 C 0.511 3.489 11 O -0.578 6.578 12 C -0.087 4.087 13 C -0.028 4.028 14 C -0.170 4.170 15 C -0.078 4.078 16 C -0.241 4.241 17 C 0.119 3.881 18 O -0.247 6.247 19 C -0.400 4.400 20 H 0.080 0.920 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.970 3.030 24 H -0.270 1.270 25 H -0.261 1.261 26 H -0.263 1.263 27 C -0.181 4.181 28 C 0.134 3.866 29 H 0.070 0.930 30 C 0.042 3.958 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.127 0.873 44 H 0.148 0.852 45 H 0.140 0.860 46 H 0.107 0.893 47 H 0.285 0.715 48 H 0.121 0.879 49 H 0.065 0.935 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.560 27.237 1.403 35.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.275 5.275 3 C -0.081 4.081 4 C -0.130 4.130 5 H 0.109 0.891 6 C -0.147 4.147 7 C -0.168 4.168 8 C -0.027 4.027 9 N -0.328 5.328 10 C 0.301 3.699 11 O -0.456 6.456 12 C -0.126 4.126 13 C -0.029 4.029 14 C -0.189 4.189 15 C -0.096 4.096 16 C -0.260 4.260 17 C 0.070 3.930 18 O -0.155 6.155 19 C -0.476 4.476 20 H 0.097 0.903 21 C -0.189 4.189 22 N -0.565 5.565 23 Si 0.792 3.208 24 H -0.195 1.195 25 H -0.186 1.186 26 H -0.187 1.187 27 C -0.200 4.200 28 C 0.028 3.972 29 H 0.088 0.912 30 C -0.087 4.087 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.162 0.838 43 H 0.145 0.855 44 H 0.166 0.834 45 H 0.158 0.842 46 H 0.125 0.875 47 H 0.094 0.906 48 H 0.139 0.861 49 H 0.083 0.917 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.181 26.394 2.316 34.555 hybrid contribution 0.170 -0.887 -0.241 0.934 sum -22.012 25.507 2.075 33.756 Atomic orbital electron populations 1.22589 0.86072 1.02385 1.01606 1.63546 1.09488 1.14992 1.39494 1.23076 0.98372 0.89137 0.97527 1.22640 0.99231 0.94636 0.96514 0.89054 1.21551 0.97663 1.01896 0.93637 1.21826 1.02145 0.95038 0.97818 1.22169 0.96660 0.94335 0.89586 1.47541 1.26375 1.52116 1.06794 1.21126 0.79832 0.77098 0.91884 1.90759 1.54444 1.50430 1.50004 1.20752 0.95913 1.02852 0.93099 1.19219 0.95370 0.91449 0.96816 1.20997 0.91168 1.00407 1.06288 1.21112 0.99859 0.91857 0.96743 1.21328 0.96923 0.96623 1.11125 1.19587 0.95050 0.83110 0.95243 1.83502 1.33477 1.15159 1.83335 1.20717 0.84073 0.90449 1.52374 0.90273 1.25282 1.02097 0.95987 0.95525 1.69723 1.27775 1.08862 1.50135 0.85227 0.78536 0.77772 0.79219 1.19514 1.18563 1.18733 1.20259 0.95720 0.93634 1.10377 1.21319 0.96743 0.95941 0.83181 0.91166 1.23077 0.95745 0.97916 0.91962 0.94196 0.91700 0.90261 0.90908 0.90066 0.91998 0.89907 0.87869 0.91317 0.86859 0.90247 0.83810 0.85503 0.83447 0.84173 0.87507 0.90552 0.86146 0.91706 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.12 127.69 1.16 1.43 16 2 N -0.55 -9.48 5.45 -911.05 -4.97 -14.44 16 3 C 0.05 0.62 6.27 86.88 0.54 1.17 16 4 C -0.11 -1.48 3.59 -9.67 -0.03 -1.51 16 5 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 6 C -0.11 -0.86 4.65 30.49 0.14 -0.72 16 7 C -0.13 -0.81 6.09 30.51 0.19 -0.62 16 8 C 0.09 0.85 6.05 86.33 0.52 1.37 16 9 N -0.60 -11.03 2.74 -795.89 -2.18 -13.21 16 10 C 0.51 13.38 7.65 87.66 0.67 14.05 16 11 O -0.58 -22.21 15.35 -3.02 -0.05 -22.26 16 12 C -0.09 -1.82 4.14 29.10 0.12 -1.69 16 13 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 14 C -0.17 -5.45 9.70 22.30 0.22 -5.23 16 15 C -0.08 -2.89 10.04 22.25 0.22 -2.67 16 16 C -0.24 -11.41 9.17 22.39 0.21 -11.21 16 17 C 0.12 5.99 6.65 22.58 0.15 6.14 16 18 O -0.25 -14.25 8.59 -22.69 -0.19 -14.45 16 19 C -0.40 -24.80 9.95 67.92 0.68 -24.12 16 20 H 0.08 5.14 5.44 -2.91 -0.02 5.13 16 21 C 0.01 0.55 5.49 84.84 0.47 1.02 16 22 N -0.92 -57.18 13.96 21.61 0.30 -56.88 16 23 Si 0.97 47.45 28.62 68.60 1.96 49.41 16 24 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 27 C -0.18 -7.50 9.65 22.39 0.22 -7.28 16 28 C 0.13 2.72 3.04 46.08 0.14 2.86 16 29 H 0.07 2.02 6.95 -2.39 -0.02 2.01 16 30 C 0.04 0.81 5.92 86.44 0.51 1.32 16 31 H 0.04 0.38 7.77 -2.39 -0.02 0.36 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 0.76 7.19 -2.39 -0.02 0.74 16 36 H 0.06 0.50 6.86 -2.39 -0.02 0.48 16 37 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.11 0.60 5.81 -2.39 -0.01 0.58 16 41 H 0.08 0.61 7.61 -2.39 -0.02 0.59 16 42 H 0.14 1.77 7.54 -2.39 -0.02 1.75 16 43 H 0.13 2.02 7.88 -2.39 -0.02 2.00 16 44 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 45 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 46 H 0.11 5.51 5.64 -2.91 -0.02 5.50 16 47 H 0.28 16.12 8.31 -92.71 -0.77 15.35 16 48 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 49 H 0.06 1.03 6.58 -2.39 -0.02 1.02 16 50 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -81.34 390.44 1.85 -79.49 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.94 Total: 19.04 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 6.03 Total: -26.70 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -6.85 Total: -84.53 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.24 Total: -36.71 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.96 Total: 49.41 kcal Total: -81.34 1.85 -79.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819718039.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.848 kcal (2) G-P(sol) polarization free energy of solvation -81.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds