Wall clock time and date at job start Wed Apr 1 2020 02:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47154 * 2 1 4 4 C 1.35909 * 116.99543 * 180.02562 * 3 2 1 5 5 C 1.38903 * 119.97440 * 359.71993 * 4 3 2 6 6 C 1.38288 * 120.29015 * 179.72580 * 5 4 3 7 7 C 1.37942 * 120.22996 * 0.55123 * 6 5 4 8 8 C 1.39828 * 119.93635 * 359.72514 * 7 6 5 9 9 C 1.47225 * 120.14070 * 180.02562 * 8 7 6 10 10 C 1.34807 * 119.99676 * 359.97438 * 9 8 7 11 11 C 1.46434 * 119.99347 * 179.97438 * 10 9 8 12 12 O 1.21689 * 120.00328 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99646 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00093 * 180.02562 * 13 11 10 15 15 C 1.53043 * 109.46028 * 275.06737 * 14 13 11 16 16 C 1.53184 * 109.31439 * 178.61360 * 15 14 13 17 17 N 1.46925 * 108.77763 * 54.63546 * 16 15 14 18 18 C 1.36933 * 120.63218 * 126.41354 * 17 16 15 19 19 H 1.08001 * 120.00312 * 331.82005 * 18 17 16 20 20 C 1.38819 * 119.99853 * 151.82799 * 18 17 16 21 21 N 1.31612 * 120.00173 * 343.07177 * 20 18 17 22 22 Si 1.86800 * 119.99764 * 163.08144 * 20 18 17 23 23 H 1.48492 * 109.47533 * 59.99573 * 22 20 18 24 24 H 1.48505 * 109.46860 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46900 * 299.99385 * 22 20 18 26 26 C 1.46930 * 118.73786 * 306.39393 * 17 16 15 27 27 C 1.53035 * 109.45944 * 154.99977 * 14 13 11 28 28 C 1.38380 * 119.96790 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47361 * 300.00493 * 1 2 3 31 31 H 1.09004 * 109.46831 * 60.00127 * 1 2 3 32 32 H 1.08998 * 109.46739 * 239.99074 * 2 1 3 33 33 H 1.09004 * 109.46831 * 119.99873 * 2 1 3 34 34 H 1.08004 * 119.85029 * 359.97438 * 5 4 3 35 35 H 1.07994 * 119.88217 * 180.25853 * 6 5 4 36 36 H 1.08000 * 120.02935 * 179.74922 * 7 6 5 37 37 H 1.07997 * 119.99762 * 179.97438 * 9 8 7 38 38 H 1.07990 * 120.00180 * 0.02562 * 10 9 8 39 39 H 0.97003 * 119.99881 * 359.97438 * 13 11 10 40 40 H 1.08995 * 109.45828 * 35.02756 * 14 13 11 41 41 H 1.08999 * 109.49400 * 298.56714 * 15 14 13 42 42 H 1.08997 * 109.49539 * 58.65939 * 15 14 13 43 43 H 1.09002 * 109.58836 * 294.84531 * 16 15 14 44 44 H 1.08999 * 109.70778 * 174.49044 * 16 15 14 45 45 H 0.96997 * 120.00491 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58421 * 293.82399 * 26 17 16 47 47 H 1.09001 * 109.70495 * 173.46655 * 26 17 16 48 48 H 1.08996 * 109.49840 * 301.33265 * 27 14 13 49 49 H 1.08998 * 109.49988 * 61.40119 * 27 14 13 50 50 H 1.07997 * 120.11522 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1993 0.4232 0.0048 6 6 5.5712 0.5967 -0.0014 7 6 6.1107 1.8662 -0.0015 8 6 5.2684 2.9824 -0.0012 9 6 5.8394 4.3394 -0.0019 10 6 7.1769 4.5078 -0.0023 11 6 7.7447 5.8576 -0.0036 12 8 7.0093 6.8271 -0.0038 13 7 9.0820 6.0261 -0.0046 14 6 9.6501 7.3764 -0.0053 15 6 9.7294 7.8955 -1.4428 16 6 10.2915 9.3204 -1.4367 17 7 11.5764 9.3189 -0.7241 18 6 12.7015 9.8308 -1.3132 19 1 12.8014 9.8186 -2.3885 20 6 13.7140 10.3655 -0.5281 21 7 13.4740 10.6889 0.7248 22 14 15.4169 10.6260 -1.2503 23 1 15.3283 11.5565 -2.4042 24 1 16.3102 11.2055 -0.2151 25 1 15.9660 9.3236 -1.7058 26 6 11.6310 8.7580 0.6328 27 6 11.0537 7.3392 0.6035 28 6 3.8820 2.8042 -0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7833 -0.5735 0.0098 35 1 6.2225 -0.2648 -0.0014 36 1 7.1827 1.9980 -0.0023 37 1 5.1867 5.1998 -0.0020 38 1 7.8295 3.6474 -0.0026 39 1 9.6682 5.2532 -0.0041 40 1 9.0157 8.0376 0.5849 41 1 10.3836 7.2488 -2.0276 42 1 8.7325 7.8995 -1.8836 43 1 9.5933 9.9865 -0.9298 44 1 10.4424 9.6604 -2.4613 45 1 14.1812 11.0628 1.2733 46 1 11.0419 9.3781 1.3085 47 1 12.6652 8.7247 0.9755 48 1 10.9994 6.9475 1.6192 49 1 11.6953 6.6974 -0.0002 50 1 3.2255 3.6617 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859265430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:50 Heat of formation + Delta-G solvation = -19.296760 kcal Electronic energy + Delta-G solvation = -28336.754653 eV Core-core repulsion = 24329.808493 eV Total energy + Delta-G solvation = -4006.946161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.55996 -39.68827 -38.18487 -37.29952 -34.44350 -33.98390 -32.49637 -32.13389 -30.69004 -30.11439 -29.61531 -29.02968 -25.56261 -24.65702 -23.39230 -22.99093 -22.24237 -21.85100 -20.75698 -19.83006 -19.10441 -18.18976 -17.39247 -16.66940 -16.58010 -16.53664 -16.11924 -15.52473 -14.86290 -14.77773 -14.57924 -14.10451 -13.96290 -13.89486 -13.74651 -13.55699 -13.50380 -13.07983 -12.95324 -12.69790 -12.60142 -12.54568 -12.35331 -12.12899 -11.77111 -11.44865 -11.33922 -11.19746 -11.10516 -10.84912 -10.70664 -10.50791 -10.44845 -10.26543 -10.02759 -9.89797 -9.69797 -9.47631 -8.87737 -8.68578 -8.47190 -8.40562 -6.67028 -5.78389 -3.20611 0.24768 1.05633 1.77917 2.70431 3.28718 3.38325 3.43026 3.44874 3.46044 3.60285 4.31094 4.35551 4.39366 4.50560 4.54748 4.57738 4.69380 4.77403 4.84348 4.99872 5.05063 5.11243 5.26320 5.30549 5.35913 5.44977 5.50819 5.52520 5.53069 5.61387 5.78254 5.86350 5.90296 6.00441 6.06612 6.11177 6.29219 6.33039 6.34478 6.37586 6.55275 6.59100 6.61480 6.81928 6.94359 6.98384 7.01654 7.32958 7.61158 7.75762 7.81173 8.42046 8.45899 9.21967 9.85199 10.42511 11.30561 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.001481 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.903224 B =18905.825922 C =19194.878095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.128 3.872 5 C -0.204 4.204 6 C -0.081 4.081 7 C -0.141 4.141 8 C -0.028 4.028 9 C -0.035 4.035 10 C -0.192 4.192 11 C 0.540 3.460 12 O -0.545 6.545 13 N -0.718 5.718 14 C 0.150 3.850 15 C -0.139 4.139 16 C 0.147 3.853 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.175 3.825 27 C -0.147 4.147 28 C -0.132 4.132 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.396 0.604 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.549 -25.572 0.048 32.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.083 3.917 5 C -0.222 4.222 6 C -0.099 4.099 7 C -0.159 4.159 8 C -0.028 4.028 9 C -0.055 4.055 10 C -0.213 4.213 11 C 0.328 3.672 12 O -0.425 6.425 13 N -0.366 5.366 14 C 0.047 3.953 15 C -0.179 4.179 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.048 3.952 27 C -0.187 4.187 28 C -0.150 4.150 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.230 0.770 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.084 -24.621 0.170 32.415 hybrid contribution 1.308 -0.620 -0.309 1.481 sum -19.776 -25.241 -0.140 32.065 Atomic orbital electron populations 1.21784 0.92602 1.02929 1.03696 1.22798 0.96014 0.81873 1.01397 1.86092 1.18872 1.29401 1.88659 1.18839 0.82405 0.93914 0.96575 1.21360 0.94476 0.98022 1.08376 1.20877 0.94246 0.97299 0.97445 1.21356 1.00040 0.91799 1.02748 1.18806 0.92194 0.92976 0.98830 1.22305 0.95437 0.95051 0.92722 1.23094 0.96271 0.96775 1.05160 1.18301 0.82722 0.89229 0.76959 1.90813 1.59623 1.41848 1.50212 1.46251 1.06223 1.10105 1.74065 1.21057 0.94983 0.81756 0.97516 1.22370 1.00008 0.99851 0.95664 1.20876 0.88208 0.92253 0.96640 1.44079 1.04056 1.68876 1.14511 1.19159 0.94542 1.33072 0.91542 0.91693 1.25047 0.99609 0.98318 0.96601 1.70012 1.31988 1.45174 1.07602 0.86365 0.84345 0.77934 0.78093 1.20877 1.21640 1.21066 1.20736 1.01210 0.86942 0.86306 1.22537 0.94292 1.02794 0.99040 1.20613 0.94199 0.95277 1.04927 0.90308 0.91419 0.91412 0.91988 0.91992 0.85465 0.85400 0.85177 0.84386 0.85349 0.77010 0.89984 0.92343 0.92706 0.96176 0.92552 0.93553 0.96114 0.89051 0.92737 0.92173 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 37.16 0.38 -0.23 16 2 C 0.05 0.29 5.46 37.16 0.20 0.49 16 3 O -0.32 -2.77 10.13 -19.46 -0.20 -2.97 16 4 C 0.13 1.17 6.68 -39.28 -0.26 0.90 16 5 C -0.20 -1.54 9.04 -39.32 -0.36 -1.89 16 6 C -0.08 -0.58 10.02 -39.67 -0.40 -0.98 16 7 C -0.14 -1.16 9.41 -39.10 -0.37 -1.53 16 8 C -0.03 -0.27 5.87 -105.08 -0.62 -0.88 16 9 C -0.04 -0.38 9.46 -37.15 -0.35 -0.73 16 10 C -0.19 -2.10 9.41 -37.50 -0.35 -2.46 16 11 C 0.54 8.02 7.71 -12.96 -0.10 7.92 16 12 O -0.55 -10.28 15.89 5.20 0.08 -10.20 16 13 N -0.72 -10.17 5.07 -55.16 -0.28 -10.45 16 14 C 0.15 2.65 2.41 -67.89 -0.16 2.49 16 15 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 16 C 0.15 3.21 6.52 -3.72 -0.02 3.19 16 17 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 18 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 22 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 27 C -0.15 -2.70 5.55 -26.61 -0.15 -2.84 16 28 C -0.13 -1.27 9.73 -38.95 -0.38 -1.65 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 33 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 34 H 0.13 0.68 6.28 -52.48 -0.33 0.35 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.85 6.16 -52.49 -0.32 0.53 16 37 H 0.14 1.58 7.52 -52.49 -0.39 1.19 16 38 H 0.13 1.02 6.07 -52.49 -0.32 0.70 16 39 H 0.40 4.41 8.58 -40.82 -0.35 4.06 16 40 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 48 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 406.27 15.07 6.12 6.12 Total: -1.00 -32.87 406.27 -10.36 -43.23 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.83 Total: 2.59 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -3.33 Total: -3.95 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.17 Total: -51.36 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.11 Total: -13.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.87 -10.36 -43.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859265430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.937 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds