Wall clock time and date at job start Wed Apr 1 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47154 * 2 1 4 4 C 1.35909 * 116.99543 * 180.02562 * 3 2 1 5 5 C 1.38903 * 119.97440 * 359.71993 * 4 3 2 6 6 C 1.38288 * 120.29015 * 179.72580 * 5 4 3 7 7 C 1.37942 * 120.22996 * 0.55123 * 6 5 4 8 8 C 1.39828 * 119.93635 * 359.72514 * 7 6 5 9 9 C 1.47225 * 120.14070 * 180.02562 * 8 7 6 10 10 C 1.34807 * 119.99676 * 359.97438 * 9 8 7 11 11 C 1.46434 * 119.99347 * 179.97438 * 10 9 8 12 12 O 1.21689 * 120.00328 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99646 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00093 * 180.02562 * 13 11 10 15 15 C 1.53043 * 109.46028 * 275.06737 * 14 13 11 16 16 C 1.53184 * 109.31439 * 178.61360 * 15 14 13 17 17 N 1.46925 * 108.77763 * 54.63546 * 16 15 14 18 18 C 1.36933 * 120.63218 * 126.41354 * 17 16 15 19 19 H 1.08001 * 120.00312 * 331.82005 * 18 17 16 20 20 C 1.38819 * 119.99853 * 151.82799 * 18 17 16 21 21 N 1.31612 * 120.00173 * 343.07177 * 20 18 17 22 22 Si 1.86800 * 119.99764 * 163.08144 * 20 18 17 23 23 H 1.48492 * 109.47533 * 59.99573 * 22 20 18 24 24 H 1.48505 * 109.46860 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46900 * 299.99385 * 22 20 18 26 26 C 1.46930 * 118.73786 * 306.39393 * 17 16 15 27 27 C 1.53035 * 109.45944 * 154.99977 * 14 13 11 28 28 C 1.38380 * 119.96790 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47361 * 300.00493 * 1 2 3 31 31 H 1.09004 * 109.46831 * 60.00127 * 1 2 3 32 32 H 1.08998 * 109.46739 * 239.99074 * 2 1 3 33 33 H 1.09004 * 109.46831 * 119.99873 * 2 1 3 34 34 H 1.08004 * 119.85029 * 359.97438 * 5 4 3 35 35 H 1.07994 * 119.88217 * 180.25853 * 6 5 4 36 36 H 1.08000 * 120.02935 * 179.74922 * 7 6 5 37 37 H 1.07997 * 119.99762 * 179.97438 * 9 8 7 38 38 H 1.07990 * 120.00180 * 0.02562 * 10 9 8 39 39 H 0.97003 * 119.99881 * 359.97438 * 13 11 10 40 40 H 1.08995 * 109.45828 * 35.02756 * 14 13 11 41 41 H 1.08999 * 109.49400 * 298.56714 * 15 14 13 42 42 H 1.08997 * 109.49539 * 58.65939 * 15 14 13 43 43 H 1.09002 * 109.58836 * 294.84531 * 16 15 14 44 44 H 1.08999 * 109.70778 * 174.49044 * 16 15 14 45 45 H 0.96997 * 120.00491 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58421 * 293.82399 * 26 17 16 47 47 H 1.09001 * 109.70495 * 173.46655 * 26 17 16 48 48 H 1.08996 * 109.49840 * 301.33265 * 27 14 13 49 49 H 1.08998 * 109.49988 * 61.40119 * 27 14 13 50 50 H 1.07997 * 120.11522 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1993 0.4232 0.0048 6 6 5.5712 0.5967 -0.0014 7 6 6.1107 1.8662 -0.0015 8 6 5.2684 2.9824 -0.0012 9 6 5.8394 4.3394 -0.0019 10 6 7.1769 4.5078 -0.0023 11 6 7.7447 5.8576 -0.0036 12 8 7.0093 6.8271 -0.0038 13 7 9.0820 6.0261 -0.0046 14 6 9.6501 7.3764 -0.0053 15 6 9.7294 7.8955 -1.4428 16 6 10.2915 9.3204 -1.4367 17 7 11.5764 9.3189 -0.7241 18 6 12.7015 9.8308 -1.3132 19 1 12.8014 9.8186 -2.3885 20 6 13.7140 10.3655 -0.5281 21 7 13.4740 10.6889 0.7248 22 14 15.4169 10.6260 -1.2503 23 1 15.3283 11.5565 -2.4042 24 1 16.3102 11.2055 -0.2151 25 1 15.9660 9.3236 -1.7058 26 6 11.6310 8.7580 0.6328 27 6 11.0537 7.3392 0.6035 28 6 3.8820 2.8042 -0.0011 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7833 -0.5735 0.0098 35 1 6.2225 -0.2648 -0.0014 36 1 7.1827 1.9980 -0.0023 37 1 5.1867 5.1998 -0.0020 38 1 7.8295 3.6474 -0.0026 39 1 9.6682 5.2532 -0.0041 40 1 9.0157 8.0376 0.5849 41 1 10.3836 7.2488 -2.0276 42 1 8.7325 7.8995 -1.8836 43 1 9.5933 9.9865 -0.9298 44 1 10.4424 9.6604 -2.4613 45 1 14.1812 11.0628 1.2733 46 1 11.0419 9.3781 1.3085 47 1 12.6652 8.7247 0.9755 48 1 10.9994 6.9475 1.6192 49 1 11.6953 6.6974 -0.0002 50 1 3.2255 3.6617 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859265430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:49 Heat of formation + Delta-G solvation = -38.467854 kcal Electronic energy + Delta-G solvation = -28337.585974 eV Core-core repulsion = 24329.808493 eV Total energy + Delta-G solvation = -4007.777482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19856 -40.89442 -39.09590 -38.63322 -36.02265 -34.81341 -33.91266 -32.92581 -31.90378 -31.46143 -30.93600 -29.93070 -27.13437 -25.66747 -24.33057 -23.88892 -23.61612 -23.16394 -21.74437 -21.16763 -20.37732 -18.88468 -18.86075 -18.08318 -17.28115 -17.11204 -17.04769 -16.78729 -16.39030 -15.93400 -15.76580 -15.42288 -15.33014 -14.94183 -14.70288 -14.61559 -14.41408 -14.32301 -14.23136 -14.05321 -13.41492 -13.25893 -13.22270 -13.17234 -13.00051 -12.70376 -12.58184 -12.54523 -12.35323 -12.22488 -12.03653 -11.87754 -11.78376 -11.75867 -11.56670 -11.36824 -11.16845 -10.95114 -10.54781 -10.03564 -9.50357 -9.10162 -8.70796 -7.87442 -5.33488 -0.50509 0.45371 0.98013 1.49665 1.51202 1.58633 2.14166 2.29846 2.31679 2.52689 2.88103 3.28428 3.58524 3.67053 3.79878 3.88034 3.97052 4.02014 4.05912 4.07393 4.16788 4.20339 4.32897 4.33697 4.37445 4.45227 4.46301 4.52438 4.64586 4.81396 4.84625 4.85439 4.92601 4.93647 5.01168 5.05115 5.09792 5.15222 5.18815 5.24591 5.29323 5.33669 5.44636 5.46945 5.56018 5.63144 5.64621 5.71260 5.76533 6.38917 6.43903 6.64422 7.14638 7.29473 7.83942 8.37304 9.19578 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.001481 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.903224 B =18905.825922 C =19194.878095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.337 6.337 4 C 0.113 3.887 5 C -0.200 4.200 6 C -0.080 4.080 7 C -0.142 4.142 8 C -0.043 4.043 9 C -0.026 4.026 10 C -0.195 4.195 11 C 0.538 3.462 12 O -0.594 6.594 13 N -0.704 5.704 14 C 0.161 3.839 15 C -0.123 4.123 16 C 0.144 3.856 17 N -0.608 5.608 18 C -0.268 4.268 19 H 0.067 0.933 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.179 3.821 27 C -0.128 4.128 28 C -0.151 4.151 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.167 0.833 39 H 0.416 0.584 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.005 0.995 44 H 0.058 0.942 45 H 0.251 0.749 46 H -0.007 1.007 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.124 -29.365 -0.672 35.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.252 6.252 4 C 0.068 3.932 5 C -0.218 4.218 6 C -0.098 4.098 7 C -0.159 4.159 8 C -0.043 4.043 9 C -0.046 4.046 10 C -0.215 4.215 11 C 0.328 3.672 12 O -0.476 6.476 13 N -0.354 5.354 14 C 0.056 3.944 15 C -0.164 4.164 16 C 0.018 3.982 17 N -0.332 5.332 18 C -0.398 4.398 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.200 1.200 26 C 0.052 3.948 27 C -0.168 4.168 28 C -0.169 4.169 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.169 0.831 37 H 0.138 0.862 38 H 0.184 0.816 39 H 0.253 0.747 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.011 0.989 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.667 -28.468 -0.565 35.183 hybrid contribution 1.016 0.534 -0.084 1.150 sum -19.651 -27.934 -0.649 34.160 Atomic orbital electron populations 1.21820 0.91859 1.04173 1.03031 1.23072 0.96694 0.80634 1.02479 1.86074 1.18870 1.31539 1.88736 1.18996 0.82932 0.94185 0.97086 1.21697 0.94691 0.98580 1.06839 1.21265 0.94467 0.97923 0.96154 1.21648 1.00928 0.91620 1.01750 1.18763 0.92347 0.92757 1.00474 1.22309 0.95391 0.95432 0.91435 1.22997 0.96534 0.95471 1.06479 1.18902 0.82374 0.90277 0.75646 1.90799 1.60646 1.43788 1.52413 1.45936 1.06475 1.09226 1.73757 1.20649 0.94156 0.83300 0.96296 1.22164 0.99975 0.97671 0.96541 1.20966 0.86863 0.94296 0.96113 1.44331 1.04636 1.69229 1.14991 1.19505 0.95483 1.32863 0.91906 0.91485 1.25818 1.03079 0.98416 0.96988 1.70177 1.32777 1.46282 1.08888 0.85312 0.79702 0.78061 0.77173 1.20347 1.22026 1.20038 1.20564 0.99433 0.89585 0.85192 1.22256 0.94387 0.99279 1.00856 1.20719 0.94551 0.95801 1.05859 0.88081 0.92085 0.92081 0.90828 0.90823 0.83143 0.82384 0.83115 0.86176 0.81591 0.74670 0.92658 0.91312 0.92370 0.97666 0.92372 0.93991 0.98907 0.91779 0.90427 0.90905 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 71.98 0.74 -0.28 16 2 C 0.05 0.41 5.46 71.98 0.39 0.81 16 3 O -0.34 -5.74 10.13 -92.53 -0.94 -6.67 16 4 C 0.11 1.95 6.68 22.46 0.15 2.10 16 5 C -0.20 -2.47 9.04 22.44 0.20 -2.27 16 6 C -0.08 -0.87 10.02 22.21 0.22 -0.65 16 7 C -0.14 -1.89 9.41 22.58 0.21 -1.68 16 8 C -0.04 -0.78 5.87 -20.16 -0.12 -0.90 16 9 C -0.03 -0.53 9.46 23.85 0.23 -0.31 16 10 C -0.19 -3.87 9.41 23.62 0.22 -3.65 16 11 C 0.54 15.40 7.71 86.38 0.67 16.06 16 12 O -0.59 -22.72 15.89 -4.31 -0.07 -22.79 16 13 N -0.70 -18.56 5.07 -446.64 -2.27 -20.82 16 14 C 0.16 5.57 2.41 45.02 0.11 5.67 16 15 C -0.12 -4.51 5.65 30.67 0.17 -4.34 16 16 C 0.14 6.38 6.52 86.36 0.56 6.94 16 17 N -0.61 -31.08 2.99 -699.09 -2.09 -33.18 16 18 C -0.27 -14.80 9.58 84.04 0.81 -14.00 16 19 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 20 C -0.05 -2.65 4.92 84.86 0.42 -2.23 16 21 N -0.94 -55.38 11.19 21.65 0.24 -55.13 16 22 Si 0.97 44.52 29.59 68.60 2.03 46.55 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 C 0.18 8.60 5.30 86.36 0.46 9.06 16 27 C -0.13 -4.57 5.55 30.67 0.17 -4.40 16 28 C -0.15 -2.90 9.73 22.68 0.22 -2.68 16 29 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 33 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 34 H 0.15 1.07 6.28 -2.91 -0.02 1.05 16 35 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.15 1.31 6.16 -2.91 -0.02 1.29 16 37 H 0.12 2.89 7.52 -2.91 -0.02 2.87 16 38 H 0.17 1.96 6.07 -2.92 -0.02 1.94 16 39 H 0.42 7.82 8.58 -92.71 -0.80 7.02 16 40 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 46 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 47 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 48 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 50 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -73.76 406.27 2.89 -70.88 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.15 Total: 17.91 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.83 Total: 3.27 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.12 Total: -109.13 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.01 Total: -29.47 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -73.76 2.89 -70.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859265430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.411 kcal (2) G-P(sol) polarization free energy of solvation -73.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds