Wall clock time and date at job start Wed Apr 1 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 120.00047 * 2 1 4 4 N 1.34776 * 120.00010 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99874 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47057 * 176.70084 * 5 4 2 7 7 H 1.09004 * 109.58632 * 312.86160 * 6 5 4 8 8 C 1.53188 * 109.70356 * 192.50155 * 6 5 4 9 9 C 1.53042 * 109.31306 * 185.50708 * 8 6 5 10 10 C 1.53046 * 109.53513 * 61.36694 * 9 8 6 11 11 C 1.53628 * 109.24120 * 298.50847 * 10 9 8 12 12 N 1.46925 * 109.58410 * 73.13859 * 6 5 4 13 13 C 1.34775 * 120.63383 * 353.51668 * 12 6 5 14 14 O 1.21281 * 120.00071 * 354.82221 * 13 12 6 15 15 C 1.50700 * 120.00177 * 174.81404 * 13 12 6 16 16 C 1.50696 * 109.47234 * 180.02562 * 15 13 12 17 17 C 1.37646 * 120.12887 * 265.00530 * 16 15 13 18 18 C 1.38612 * 120.24935 * 180.02562 * 17 16 15 19 19 C 1.38660 * 120.50124 * 359.97365 * 18 17 16 20 20 C 1.37592 * 120.24589 * 0.02562 * 19 18 17 21 21 C 1.40697 * 120.12732 * 85.02591 * 16 15 13 22 22 C 1.41392 * 120.24432 * 359.95392 * 21 16 15 23 23 H 1.08001 * 120.00209 * 332.47986 * 22 21 16 24 24 C 1.39951 * 119.99943 * 152.47637 * 22 21 16 25 25 N 1.30830 * 119.99800 * 344.51557 * 24 22 21 26 26 Si 1.86797 * 120.00047 * 164.51555 * 24 22 21 27 27 H 1.48507 * 109.46987 * 59.99985 * 26 24 22 28 28 H 1.48494 * 109.46850 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47223 * 300.00055 * 26 24 22 30 30 H 1.08998 * 109.46852 * 239.99875 * 1 2 3 31 31 H 1.08998 * 109.47053 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.46789 * 120.00276 * 1 2 3 33 33 H 0.97000 * 119.99867 * 359.97438 * 4 2 1 34 34 H 1.08994 * 109.47045 * 56.70466 * 5 4 2 35 35 H 1.09000 * 109.46934 * 296.70097 * 5 4 2 36 36 H 1.09001 * 109.50071 * 305.45991 * 8 6 5 37 37 H 1.08995 * 109.49761 * 65.55684 * 8 6 5 38 38 H 1.08996 * 109.46127 * 181.37971 * 9 8 6 39 39 H 1.08996 * 109.45937 * 301.34783 * 9 8 6 40 40 H 1.08994 * 109.50176 * 58.58624 * 10 9 8 41 41 H 1.09001 * 109.49669 * 178.65050 * 10 9 8 42 42 H 1.08998 * 109.74202 * 295.12067 * 11 10 9 43 43 H 1.08997 * 109.66110 * 174.54636 * 11 10 9 44 44 H 1.09002 * 109.46951 * 60.00120 * 15 13 12 45 45 H 1.08997 * 109.47434 * 300.00483 * 15 13 12 46 46 H 1.07998 * 119.87388 * 0.04328 * 17 16 15 47 47 H 1.08001 * 119.74900 * 180.02562 * 18 17 16 48 48 H 1.07995 * 119.87257 * 179.74816 * 19 18 17 49 49 H 1.08007 * 120.12835 * 179.97438 * 20 19 18 50 50 H 0.97001 * 119.99585 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1672 -0.0011 6 6 4.1560 -2.6073 0.0814 7 1 3.6195 -3.1406 0.8662 8 6 5.6558 -2.6070 0.3935 9 6 6.1846 -4.0421 0.3384 10 6 5.9843 -4.6075 -1.0696 11 6 4.4834 -4.6328 -1.3963 12 7 3.9411 -3.2804 -1.2068 13 6 3.2549 -2.6712 -2.1939 14 8 2.7279 -1.5975 -1.9929 15 6 3.1425 -3.3240 -3.5475 16 6 2.3315 -2.4444 -4.4637 17 6 0.9803 -2.6613 -4.6121 18 6 0.2320 -1.8541 -5.4546 19 6 0.8334 -0.8202 -6.1562 20 6 2.1825 -0.5852 -6.0231 21 6 2.9524 -1.3986 -5.1709 22 6 4.3395 -1.1661 -5.0259 23 1 4.8405 -1.4421 -4.1098 24 6 5.0634 -0.5783 -6.0696 25 7 4.5487 -0.5203 -7.2710 26 14 6.7643 0.1233 -5.7472 27 1 7.6586 -0.9542 -5.2527 28 1 7.3153 0.6840 -7.0070 29 1 6.6714 1.1972 -4.7258 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 4.0096 -0.6032 0.8578 35 1 4.0089 -0.7052 -0.9192 36 1 6.1804 -1.9974 -0.3423 37 1 5.8199 -2.1968 1.3899 38 1 7.2464 -4.0475 0.5842 39 1 5.6424 -4.6566 1.0570 40 1 6.5058 -3.9792 -1.7916 41 1 6.3828 -5.6211 -1.1147 42 1 3.9731 -5.3278 -0.7295 43 1 4.3385 -4.9428 -2.4312 44 1 2.6521 -4.2920 -3.4444 45 1 4.1387 -3.4644 -3.9671 46 1 0.5014 -3.4632 -4.0700 47 1 -0.8277 -2.0312 -5.5647 48 1 0.2414 -0.2001 -6.8129 49 1 2.6490 0.2204 -6.5708 50 1 5.0506 -0.1132 -7.9944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863813418.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:32 Heat of formation + Delta-G solvation = -34.279702 kcal Electronic energy + Delta-G solvation = -32199.372137 eV Core-core repulsion = 28191.776267 eV Total energy + Delta-G solvation = -4007.595870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.51961 -38.67886 -37.79071 -36.73976 -34.53352 -33.57885 -32.79361 -31.85616 -31.19763 -29.44054 -29.42564 -27.08980 -26.00563 -24.96091 -24.27253 -22.19761 -21.03392 -20.91395 -20.16721 -19.67171 -18.50960 -17.12211 -16.86120 -16.13131 -15.85126 -15.78254 -15.42429 -14.89015 -14.72254 -14.51959 -14.34784 -14.04773 -13.71402 -13.49305 -13.40342 -13.08280 -12.80283 -12.69410 -12.54565 -12.47300 -12.34207 -12.06337 -11.70066 -11.62097 -11.53036 -11.25687 -11.17254 -11.11019 -10.99643 -10.94806 -10.76070 -10.66268 -10.64599 -10.37967 -9.46568 -9.40445 -9.33955 -9.13693 -8.74830 -8.45035 -8.06715 -7.29279 -7.24926 -6.70329 -4.31596 2.81115 2.95756 3.08227 3.11918 3.15136 3.29324 3.31534 3.36913 3.74912 3.96726 4.56951 4.69312 4.70673 4.78531 4.98811 5.09799 5.16240 5.25793 5.32759 5.43886 5.51219 5.57078 5.61605 5.66486 5.74309 5.77077 5.82763 5.88245 5.94002 5.97586 6.01742 6.09876 6.14009 6.21540 6.27192 6.42310 6.44172 6.51436 6.79626 6.84609 6.97132 7.12038 7.30597 7.43874 7.64822 7.77684 7.94273 8.01247 8.09315 8.14597 8.34018 8.67099 8.79273 8.83603 8.94772 9.04096 10.24561 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007963 B = 0.005346 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.291269 B = 5236.110982 C = 6542.584261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.516 3.484 3 O -0.561 6.561 4 N -0.690 5.690 5 C 0.132 3.868 6 C 0.139 3.861 7 H 0.068 0.932 8 C -0.129 4.129 9 C -0.115 4.115 10 C -0.139 4.139 11 C 0.112 3.888 12 N -0.626 5.626 13 C 0.506 3.494 14 O -0.492 6.492 15 C -0.068 4.068 16 C -0.178 4.178 17 C -0.082 4.082 18 C -0.238 4.238 19 C -0.107 4.107 20 C -0.156 4.156 21 C 0.131 3.869 22 C -0.455 4.455 23 H 0.072 0.928 24 C 0.078 3.922 25 N -0.797 5.797 26 Si 0.900 3.100 27 H -0.267 1.267 28 H -0.278 1.278 29 H -0.264 1.264 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.392 0.608 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.114 0.886 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -10.044 13.572 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.303 3.697 3 O -0.441 6.441 4 N -0.339 5.339 5 C 0.009 3.991 6 C 0.035 3.965 7 H 0.086 0.914 8 C -0.168 4.168 9 C -0.153 4.153 10 C -0.177 4.177 11 C -0.011 4.011 12 N -0.364 5.364 13 C 0.295 3.705 14 O -0.364 6.364 15 C -0.108 4.108 16 C -0.180 4.180 17 C -0.100 4.100 18 C -0.258 4.258 19 C -0.126 4.126 20 C -0.175 4.175 21 C 0.129 3.871 22 C -0.485 4.485 23 H 0.090 0.910 24 C -0.139 4.139 25 N -0.423 5.423 26 Si 0.725 3.275 27 H -0.192 1.192 28 H -0.203 1.203 29 H -0.188 1.188 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.225 0.775 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.132 0.868 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.183 -8.606 13.403 15.972 hybrid contribution 0.646 -0.250 -0.110 0.701 sum 1.828 -8.856 13.292 16.077 Atomic orbital electron populations 1.21849 0.92815 1.04773 1.03588 1.20428 0.90080 0.83553 0.75621 1.90667 1.70893 1.31603 1.50912 1.45659 1.06576 1.08067 1.73641 1.21369 0.81059 0.94277 1.02420 1.21344 0.95842 0.93316 0.85991 0.91376 1.21899 0.94887 0.97691 1.02342 1.21467 1.00974 0.95811 0.97007 1.22026 0.96555 1.01587 0.97521 1.21743 0.93374 0.83464 1.02562 1.48319 1.57026 1.17094 1.13958 1.21281 0.77300 0.86202 0.85737 1.90860 1.44414 1.20534 1.80608 1.20291 1.02072 0.97480 0.90932 1.19052 0.93222 1.00190 1.05556 1.20254 0.93456 0.98172 0.98160 1.20282 0.97418 1.02118 1.05963 1.20661 0.95317 0.97565 0.99058 1.21263 0.92070 1.01139 1.03021 1.17308 0.92763 0.88060 0.88958 1.19394 0.93318 1.35419 1.00378 0.90973 1.25851 1.00037 0.93639 0.94417 1.69806 1.38389 1.33583 1.00544 0.86491 0.81923 0.80312 0.78758 1.19153 1.20349 1.18814 0.90480 0.89642 0.89386 0.77503 0.92579 0.89190 0.90882 0.90869 0.91733 0.91992 0.91020 0.90992 0.91937 0.89228 0.91114 0.88857 0.89990 0.89809 0.89696 0.86819 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.32 36.01 0.37 -1.92 16 2 C 0.52 9.20 7.56 -10.98 -0.08 9.12 16 3 O -0.56 -12.61 17.09 5.55 0.09 -12.52 16 4 N -0.69 -10.75 3.18 -60.29 -0.19 -10.95 16 5 C 0.13 2.07 4.31 -4.04 -0.02 2.05 16 6 C 0.14 1.67 2.90 -67.60 -0.20 1.47 16 7 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.13 -1.34 5.35 -26.61 -0.14 -1.48 16 9 C -0.11 -0.97 5.88 -26.69 -0.16 -1.13 16 10 C -0.14 -1.27 6.10 -26.38 -0.16 -1.43 16 11 C 0.11 1.14 6.38 -3.48 -0.02 1.12 16 12 N -0.63 -8.30 2.97 -164.95 -0.49 -8.79 16 13 C 0.51 8.89 6.96 -10.99 -0.08 8.82 16 14 O -0.49 -10.26 9.70 5.56 0.05 -10.21 16 15 C -0.07 -1.26 3.54 -29.04 -0.10 -1.37 16 16 C -0.18 -4.14 4.43 -103.91 -0.46 -4.60 16 17 C -0.08 -1.83 9.66 -39.66 -0.38 -2.21 16 18 C -0.24 -5.46 10.05 -39.29 -0.39 -5.86 16 19 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 20 C -0.16 -4.18 8.67 -38.87 -0.34 -4.52 16 21 C 0.13 3.48 5.54 -106.83 -0.59 2.89 16 22 C -0.46 -11.97 8.10 -37.74 -0.31 -12.28 16 23 H 0.07 1.86 6.73 -52.49 -0.35 1.50 16 24 C 0.08 1.98 5.17 -17.34 -0.09 1.89 16 25 N -0.80 -20.85 11.03 55.55 0.61 -20.24 16 26 Si 0.90 19.31 29.59 -169.99 -5.03 14.28 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 29 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.39 5.30 8.12 -40.82 -0.33 4.97 16 34 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.09 1.83 6.36 -51.93 -0.33 1.50 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.93 5.93 -51.93 -0.31 0.62 16 44 H 0.07 1.10 7.63 -51.93 -0.40 0.71 16 45 H 0.09 1.77 6.86 -51.93 -0.36 1.42 16 46 H 0.08 1.59 8.06 -52.49 -0.42 1.16 16 47 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 48 H 0.08 1.88 8.06 -52.49 -0.42 1.45 16 49 H 0.11 3.18 6.31 -52.48 -0.33 2.85 16 50 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 393.83 15.07 5.94 5.94 Total: -1.00 -32.66 393.83 -10.44 -43.10 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.88 Total: 11.85 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -3.55 Total: -12.47 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.07 Total: -39.97 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.15 Total: -22.72 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.66 -10.44 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863813418.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.818 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds