Wall clock time and date at job start Wed Apr 1 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 120.00047 * 2 1 4 4 N 1.34776 * 120.00010 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99874 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47057 * 176.70084 * 5 4 2 7 7 H 1.09004 * 109.58632 * 312.86160 * 6 5 4 8 8 C 1.53188 * 109.70356 * 192.50155 * 6 5 4 9 9 C 1.53042 * 109.31306 * 185.50708 * 8 6 5 10 10 C 1.53046 * 109.53513 * 61.36694 * 9 8 6 11 11 C 1.53628 * 109.24120 * 298.50847 * 10 9 8 12 12 N 1.46925 * 109.58410 * 73.13859 * 6 5 4 13 13 C 1.34775 * 120.63383 * 353.51668 * 12 6 5 14 14 O 1.21281 * 120.00071 * 354.82221 * 13 12 6 15 15 C 1.50700 * 120.00177 * 174.81404 * 13 12 6 16 16 C 1.50696 * 109.47234 * 180.02562 * 15 13 12 17 17 C 1.37646 * 120.12887 * 265.00530 * 16 15 13 18 18 C 1.38612 * 120.24935 * 180.02562 * 17 16 15 19 19 C 1.38660 * 120.50124 * 359.97365 * 18 17 16 20 20 C 1.37592 * 120.24589 * 0.02562 * 19 18 17 21 21 C 1.40697 * 120.12732 * 85.02591 * 16 15 13 22 22 C 1.41392 * 120.24432 * 359.95392 * 21 16 15 23 23 H 1.08001 * 120.00209 * 332.47986 * 22 21 16 24 24 C 1.39951 * 119.99943 * 152.47637 * 22 21 16 25 25 N 1.30830 * 119.99800 * 344.51557 * 24 22 21 26 26 Si 1.86797 * 120.00047 * 164.51555 * 24 22 21 27 27 H 1.48507 * 109.46987 * 59.99985 * 26 24 22 28 28 H 1.48494 * 109.46850 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47223 * 300.00055 * 26 24 22 30 30 H 1.08998 * 109.46852 * 239.99875 * 1 2 3 31 31 H 1.08998 * 109.47053 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.46789 * 120.00276 * 1 2 3 33 33 H 0.97000 * 119.99867 * 359.97438 * 4 2 1 34 34 H 1.08994 * 109.47045 * 56.70466 * 5 4 2 35 35 H 1.09000 * 109.46934 * 296.70097 * 5 4 2 36 36 H 1.09001 * 109.50071 * 305.45991 * 8 6 5 37 37 H 1.08995 * 109.49761 * 65.55684 * 8 6 5 38 38 H 1.08996 * 109.46127 * 181.37971 * 9 8 6 39 39 H 1.08996 * 109.45937 * 301.34783 * 9 8 6 40 40 H 1.08994 * 109.50176 * 58.58624 * 10 9 8 41 41 H 1.09001 * 109.49669 * 178.65050 * 10 9 8 42 42 H 1.08998 * 109.74202 * 295.12067 * 11 10 9 43 43 H 1.08997 * 109.66110 * 174.54636 * 11 10 9 44 44 H 1.09002 * 109.46951 * 60.00120 * 15 13 12 45 45 H 1.08997 * 109.47434 * 300.00483 * 15 13 12 46 46 H 1.07998 * 119.87388 * 0.04328 * 17 16 15 47 47 H 1.08001 * 119.74900 * 180.02562 * 18 17 16 48 48 H 1.07995 * 119.87257 * 179.74816 * 19 18 17 49 49 H 1.08007 * 120.12835 * 179.97438 * 20 19 18 50 50 H 0.97001 * 119.99585 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1672 -0.0011 6 6 4.1560 -2.6073 0.0814 7 1 3.6195 -3.1406 0.8662 8 6 5.6558 -2.6070 0.3935 9 6 6.1846 -4.0421 0.3384 10 6 5.9843 -4.6075 -1.0696 11 6 4.4834 -4.6328 -1.3963 12 7 3.9411 -3.2804 -1.2068 13 6 3.2549 -2.6712 -2.1939 14 8 2.7279 -1.5975 -1.9929 15 6 3.1425 -3.3240 -3.5475 16 6 2.3315 -2.4444 -4.4637 17 6 0.9803 -2.6613 -4.6121 18 6 0.2320 -1.8541 -5.4546 19 6 0.8334 -0.8202 -6.1562 20 6 2.1825 -0.5852 -6.0231 21 6 2.9524 -1.3986 -5.1709 22 6 4.3395 -1.1661 -5.0259 23 1 4.8405 -1.4421 -4.1098 24 6 5.0634 -0.5783 -6.0696 25 7 4.5487 -0.5203 -7.2710 26 14 6.7643 0.1233 -5.7472 27 1 7.6586 -0.9542 -5.2527 28 1 7.3153 0.6840 -7.0070 29 1 6.6714 1.1972 -4.7258 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 4.0096 -0.6032 0.8578 35 1 4.0089 -0.7052 -0.9192 36 1 6.1804 -1.9974 -0.3423 37 1 5.8199 -2.1968 1.3899 38 1 7.2464 -4.0475 0.5842 39 1 5.6424 -4.6566 1.0570 40 1 6.5058 -3.9792 -1.7916 41 1 6.3828 -5.6211 -1.1147 42 1 3.9731 -5.3278 -0.7295 43 1 4.3385 -4.9428 -2.4312 44 1 2.6521 -4.2920 -3.4444 45 1 4.1387 -3.4644 -3.9671 46 1 0.5014 -3.4632 -4.0700 47 1 -0.8277 -2.0312 -5.5647 48 1 0.2414 -0.2001 -6.8129 49 1 2.6490 0.2204 -6.5708 50 1 5.0506 -0.1132 -7.9944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863813418.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:31 Heat of formation + Delta-G solvation = -53.598770 kcal Electronic energy + Delta-G solvation = -32200.209875 eV Core-core repulsion = 28191.776267 eV Total energy + Delta-G solvation = -4008.433608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73902 -40.10490 -39.41071 -38.03296 -35.85013 -35.49199 -33.92632 -33.17676 -32.55184 -31.33354 -30.52274 -28.63283 -27.27118 -26.74846 -25.23387 -23.35988 -22.81006 -22.06567 -21.62290 -21.07315 -19.78502 -19.02866 -18.12286 -17.36128 -17.32326 -17.02354 -16.97280 -16.31363 -16.10261 -16.03529 -15.47423 -15.35507 -15.11002 -14.80127 -14.60801 -14.45312 -14.36257 -13.99795 -13.87846 -13.57749 -13.51363 -13.39084 -13.35191 -13.03181 -12.91658 -12.87390 -12.78188 -12.58309 -12.47359 -12.16242 -12.12791 -11.85244 -11.58136 -11.48025 -11.30590 -11.18482 -11.06281 -10.84820 -10.09603 -9.73695 -9.28009 -9.20327 -9.11934 -8.61031 -6.30062 0.99368 1.14116 1.29210 1.38466 1.49393 1.79085 1.96856 2.15208 2.18730 2.54895 2.77733 3.54276 3.78215 3.89829 3.97554 4.06626 4.17374 4.19354 4.25483 4.28921 4.41710 4.43686 4.47767 4.55688 4.61823 4.65150 4.70299 4.71631 4.77476 4.82711 4.88296 4.98860 5.02175 5.06500 5.11396 5.13899 5.19464 5.23402 5.28092 5.35840 5.51441 5.55192 5.67693 5.77634 5.80459 6.04135 6.16987 6.22023 6.42797 6.57521 6.74640 6.75363 6.99211 7.12131 7.48205 7.52760 8.35654 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007963 B = 0.005346 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.291269 B = 5236.110982 C = 6542.584261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.500 3.500 3 O -0.622 6.622 4 N -0.673 5.673 5 C 0.136 3.864 6 C 0.146 3.854 7 H 0.104 0.896 8 C -0.128 4.128 9 C -0.108 4.108 10 C -0.137 4.137 11 C 0.104 3.896 12 N -0.616 5.616 13 C 0.506 3.494 14 O -0.534 6.534 15 C -0.065 4.065 16 C -0.176 4.176 17 C -0.088 4.088 18 C -0.236 4.236 19 C -0.120 4.120 20 C -0.193 4.193 21 C 0.097 3.903 22 C -0.480 4.480 23 H 0.065 0.935 24 C 0.037 3.963 25 N -0.829 5.829 26 Si 0.962 3.038 27 H -0.251 1.251 28 H -0.265 1.265 29 H -0.278 1.278 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.404 0.596 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 -13.616 16.104 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.289 3.711 3 O -0.506 6.506 4 N -0.322 5.322 5 C 0.012 3.988 6 C 0.043 3.957 7 H 0.122 0.878 8 C -0.167 4.167 9 C -0.146 4.146 10 C -0.176 4.176 11 C -0.017 4.017 12 N -0.353 5.353 13 C 0.294 3.706 14 O -0.410 6.410 15 C -0.105 4.105 16 C -0.178 4.178 17 C -0.106 4.106 18 C -0.255 4.255 19 C -0.139 4.139 20 C -0.213 4.213 21 C 0.095 3.905 22 C -0.510 4.510 23 H 0.083 0.917 24 C -0.177 4.177 25 N -0.456 5.456 26 Si 0.784 3.216 27 H -0.175 1.175 28 H -0.189 1.189 29 H -0.203 1.203 30 H 0.137 0.863 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.240 0.760 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.139 0.861 47 H 0.134 0.866 48 H 0.118 0.882 49 H 0.105 0.895 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.784 -12.273 15.945 20.137 hybrid contribution 0.688 0.783 -0.865 1.354 sum 1.472 -11.490 15.080 19.016 Atomic orbital electron populations 1.21815 0.89315 1.05259 1.05520 1.21308 0.92002 0.83181 0.74637 1.90632 1.72411 1.33664 1.53852 1.45580 1.06617 1.08140 1.71892 1.21243 0.81246 0.96702 0.99629 1.21453 0.97270 0.90991 0.86004 0.87790 1.21925 0.93227 0.99153 1.02425 1.21462 1.01930 0.94229 0.96969 1.22028 0.95563 1.02632 0.97338 1.22071 0.94266 0.81889 1.03495 1.48263 1.55518 1.18115 1.13380 1.21015 0.77790 0.85617 0.86130 1.90867 1.46717 1.22079 1.81343 1.20261 1.01155 0.98252 0.90783 1.19545 0.94337 0.99254 1.04681 1.20702 0.93106 0.98888 0.97877 1.20711 0.99086 1.00954 1.04775 1.20914 0.94611 0.98598 0.99744 1.21236 0.93496 1.01722 1.04799 1.17687 0.93250 0.89439 0.90131 1.19494 0.93835 1.37182 1.00490 0.91651 1.26563 1.03476 0.93610 0.94012 1.69871 1.39896 1.34596 1.01251 0.85562 0.78073 0.79430 0.78574 1.17503 1.18915 1.20348 0.86310 0.90023 0.89317 0.75998 0.92446 0.94668 0.93881 0.88998 0.90695 0.89494 0.93825 0.88323 0.88428 0.89512 0.87404 0.89866 0.86096 0.86628 0.88178 0.89455 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 10.32 71.24 0.74 -3.36 16 2 C 0.50 18.07 7.56 87.66 0.66 18.73 16 3 O -0.62 -29.35 17.09 -3.04 -0.05 -29.40 16 4 N -0.67 -20.69 3.18 -463.05 -1.47 -22.16 16 5 C 0.14 4.31 4.31 86.38 0.37 4.69 16 6 C 0.15 3.19 2.90 44.97 0.13 3.32 16 7 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 8 C -0.13 -2.40 5.35 30.67 0.16 -2.24 16 9 C -0.11 -1.42 5.88 30.62 0.18 -1.24 16 10 C -0.14 -2.09 6.10 30.82 0.19 -1.91 16 11 C 0.10 1.75 6.38 86.51 0.55 2.30 16 12 N -0.62 -15.08 2.97 -794.18 -2.36 -17.44 16 13 C 0.51 17.48 6.96 87.66 0.61 18.09 16 14 O -0.53 -22.71 9.70 -3.03 -0.03 -22.74 16 15 C -0.06 -2.35 3.54 29.10 0.10 -2.24 16 16 C -0.18 -8.20 4.43 -19.40 -0.09 -8.29 16 17 C -0.09 -3.75 9.66 22.22 0.21 -3.53 16 18 C -0.24 -10.49 10.05 22.46 0.23 -10.27 16 19 C -0.12 -6.00 10.02 22.22 0.22 -5.78 16 20 C -0.19 -10.93 8.67 22.73 0.20 -10.73 16 21 C 0.10 5.36 5.54 -21.29 -0.12 5.24 16 22 C -0.48 -26.62 8.10 23.46 0.19 -26.43 16 23 H 0.07 3.57 6.73 -2.91 -0.02 3.55 16 24 C 0.04 1.99 5.17 85.26 0.44 2.43 16 25 N -0.83 -45.65 11.03 21.83 0.24 -45.41 16 26 Si 0.96 41.39 29.59 68.60 2.03 43.42 16 27 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 28 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 29 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.40 10.11 8.12 -92.71 -0.75 9.35 16 34 H 0.06 1.77 8.09 -2.39 -0.02 1.76 16 35 H 0.03 1.53 6.36 -2.39 -0.02 1.51 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.53 5.93 -2.39 -0.01 1.51 16 44 H 0.11 3.02 7.63 -2.39 -0.02 3.00 16 45 H 0.08 3.18 6.86 -2.39 -0.02 3.17 16 46 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 47 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 48 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 49 H 0.09 5.27 6.31 -2.91 -0.02 5.25 16 50 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 Total: -1.00 -79.00 393.83 3.54 -75.46 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: 0.19 Total: 39.49 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.98 Total: -21.22 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.59 Total: -85.01 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.08 Total: -52.14 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -79.00 3.54 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863813418.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.860 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds