Wall clock time and date at job start Wed Apr 1 2020 03:32:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.46138 * 110.99696 * 2 1
4 4 C 1.53241 * 108.65998 * 187.40709 * 3 2 1
5 5 C 1.52587 * 108.34975 * 295.89355 * 4 3 2
6 6 C 1.51027 * 112.31916 * 54.36932 * 5 4 3
7 7 H 1.09006 * 106.71254 * 200.65217 * 6 5 4
8 8 C 1.45547 * 111.00149 * 128.11471 * 2 1 3
9 9 H 1.09002 * 110.38516 * 313.59541 * 8 2 1
10 10 C 1.55913 * 107.73164 * 74.32577 * 8 2 1
11 11 C 1.55042 * 101.22973 * 84.30463 * 10 8 2
12 12 N 1.46606 * 112.27522 * 84.25714 * 6 5 4
13 13 C 1.34774 * 125.93648 * 49.57241 * 12 6 5
14 14 O 1.21279 * 120.00493 * 359.71595 * 13 12 6
15 15 C 1.50706 * 119.99637 * 179.71941 * 13 12 6
16 16 C 1.50702 * 109.47088 * 179.97438 * 15 13 12
17 17 C 1.38311 * 119.92915 * 89.99653 * 16 15 13
18 18 C 1.38096 * 120.06782 * 180.02562 * 17 16 15
19 19 C 1.38883 * 119.93001 * 359.97438 * 18 17 16
20 20 O 1.35752 * 120.06733 * 179.72546 * 19 18 17
21 21 C 1.34835 * 116.99867 * 174.45565 * 20 19 18
22 22 H 1.08001 * 119.99908 * 5.03572 * 21 20 19
23 23 C 1.38654 * 119.99862 * 185.04415 * 21 20 19
24 24 N 1.31552 * 120.00015 * 179.97438 * 23 21 20
25 25 Si 1.86800 * 120.00013 * 359.97438 * 23 21 20
26 26 H 1.48498 * 109.47583 * 89.99816 * 25 23 21
27 27 H 1.48496 * 109.47072 * 210.00091 * 25 23 21
28 28 H 1.48500 * 109.47137 * 329.99829 * 25 23 21
29 29 C 1.38878 * 119.86281 * 0.02562 * 19 18 17
30 30 C 1.38101 * 119.93252 * 0.02562 * 29 19 18
31 31 H 1.09006 * 109.47169 * 291.87980 * 1 2 3
32 32 H 1.08996 * 109.47637 * 51.88196 * 1 2 3
33 33 H 1.09006 * 109.46972 * 171.88471 * 1 2 3
34 34 H 1.08992 * 109.60407 * 307.16272 * 3 2 1
35 35 H 1.09001 * 109.60269 * 67.65914 * 3 2 1
36 36 H 1.09001 * 109.68704 * 55.60691 * 4 3 2
37 37 H 1.08996 * 109.68933 * 176.13830 * 4 3 2
38 38 H 1.09004 * 108.93965 * 175.11497 * 5 4 3
39 39 H 1.08999 * 108.94051 * 293.81740 * 5 4 3
40 40 H 1.09003 * 111.06946 * 326.32105 * 10 8 2
41 41 H 1.09000 * 111.10601 * 202.31230 * 10 8 2
42 42 H 1.08997 * 110.36528 * 277.95451 * 11 10 8
43 43 H 1.09003 * 110.45550 * 155.68218 * 11 10 8
44 44 H 1.08992 * 109.47282 * 60.00082 * 15 13 12
45 45 H 1.08999 * 109.46898 * 299.99462 * 15 13 12
46 46 H 1.08001 * 119.96584 * 359.97438 * 17 16 15
47 47 H 1.07998 * 120.03699 * 179.97438 * 18 17 16
48 48 H 0.96998 * 120.00173 * 179.97438 * 24 23 21
49 49 H 1.08007 * 120.03391 * 179.97438 * 29 19 18
50 50 H 1.07994 * 119.96443 * 180.02562 * 30 29 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9926 1.3643 0.0000
4 6 3.5124 1.3062 -0.1872
5 6 4.1183 0.5965 1.0201
6 6 3.4989 -0.7602 1.2583
7 1 3.7004 -1.0186 2.2979
8 6 1.9906 -0.8387 1.0691
9 1 1.4689 -0.6311 2.0034
10 6 1.7862 -2.3260 0.6484
11 6 3.0437 -2.5682 -0.2256
12 7 4.1198 -1.8061 0.4398
13 6 5.4424 -2.0358 0.3199
14 8 6.2355 -1.3403 0.9184
15 6 5.9359 -3.1570 -0.5579
16 6 7.4418 -3.1997 -0.5192
17 6 8.0860 -3.9700 0.4320
18 6 9.4659 -4.0108 0.4704
19 6 10.2067 -3.2778 -0.4476
20 8 11.5632 -3.3116 -0.4088
21 6 12.2199 -2.6710 -1.3970
22 1 11.6697 -2.0942 -2.1256
23 6 13.6017 -2.7529 -1.4777
24 7 14.2424 -2.1284 -2.4421
25 14 14.5535 -3.7502 -0.2171
26 1 14.6909 -5.1497 -0.6944
27 1 15.9016 -3.1559 -0.0313
28 1 13.8245 -3.7379 1.0766
29 6 9.5568 -2.5054 -1.4014
30 6 8.1767 -2.4678 -1.4340
31 1 -0.3634 0.3830 0.9537
32 1 -0.3634 0.6343 -0.8084
33 1 -0.3633 -1.0174 -0.1451
34 1 1.5446 1.9280 -0.8182
35 1 1.7593 1.8456 0.9498
36 1 3.7496 0.7527 -1.0957
37 1 3.9126 2.3175 -0.2583
38 1 5.1889 0.4722 0.8569
39 1 3.9649 1.2122 1.9063
40 1 0.8739 -2.4462 0.0642
41 1 1.7812 -2.9828 1.5183
42 1 2.8816 -2.1922 -1.2358
43 1 3.2909 -3.6295 -0.2516
44 1 5.6038 -2.9893 -1.5824
45 1 5.5358 -4.1043 -0.1966
46 1 7.5094 -4.5394 1.1458
47 1 9.9684 -4.6121 1.2136
48 1 15.2091 -2.1854 -2.4984
49 1 10.1302 -1.9339 -2.1164
50 1 7.6708 -1.8677 -2.1758
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000874838253.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:32:17
Heat of formation + Delta-G solvation = -20.680400 kcal
Electronic energy + Delta-G solvation = -30209.076856 eV
Core-core repulsion = 26202.070696 eV
Total energy + Delta-G solvation = -4007.006160 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.99718 -39.30162 -38.51480 -36.63467 -35.92119 -34.06736 -32.48236 -31.87204
-30.61574 -30.15930 -29.37465 -26.89770 -26.78054 -24.94963 -23.75139 -23.47067
-22.03375 -21.94465 -20.87521 -19.76975 -18.48071 -17.82820 -17.20430 -16.94763
-16.70682 -16.01567 -15.66517 -15.34615 -14.96742 -14.73396 -14.49789 -14.15061
-13.89900 -13.75334 -13.62445 -13.55112 -13.48716 -13.24771 -12.93897 -12.62516
-12.53852 -12.42053 -12.35839 -12.15187 -12.01086 -11.91606 -11.67514 -11.56923
-11.24008 -11.02770 -10.87921 -10.82795 -10.69971 -10.61859 -10.56359 -10.10657
-9.50085 -9.32382 -8.80741 -8.67231 -8.61311 -8.16323 -7.23715 -6.36449
-4.02561 2.21434 2.23040 2.79269 2.98355 3.26122 3.29215 3.42216
3.44998 4.00244 4.21868 4.28542 4.51700 4.57763 4.67499 4.72378
4.84314 4.91330 4.95438 5.00591 5.01019 5.09935 5.14389 5.14969
5.25347 5.26589 5.29827 5.33710 5.36837 5.41414 5.45911 5.58370
5.67344 5.69689 5.73370 5.76482 5.80600 5.83217 6.00435 6.12578
6.20214 6.40200 6.42630 6.63760 6.67775 6.79150 6.86741 7.09716
7.29598 7.37873 7.52751 7.68840 7.86639 8.09919 8.33756 8.99131
9.62533 10.71350
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.025358 B = 0.002123 C = 0.002049
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1103.934879 B =13188.761563 C =13662.775018
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.546 5.546
3 C 0.064 3.936
4 C -0.113 4.113
5 C -0.139 4.139
6 C 0.153 3.847
7 H 0.060 0.940
8 C 0.088 3.912
9 H 0.060 0.940
10 C -0.128 4.128
11 C 0.109 3.891
12 N -0.618 5.618
13 C 0.528 3.472
14 O -0.520 6.520
15 C -0.076 4.076
16 C -0.160 4.160
17 C -0.061 4.061
18 C -0.191 4.191
19 C 0.162 3.838
20 O -0.219 6.219
21 C -0.388 4.388
22 H 0.106 0.894
23 C 0.062 3.938
24 N -0.881 5.881
25 Si 0.905 3.095
26 H -0.274 1.274
27 H -0.283 1.283
28 H -0.260 1.260
29 C -0.219 4.219
30 C -0.057 4.057
31 H 0.024 0.976
32 H 0.069 0.931
33 H 0.069 0.931
34 H 0.076 0.924
35 H 0.032 0.968
36 H 0.071 0.929
37 H 0.069 0.931
38 H 0.096 0.904
39 H 0.063 0.937
40 H 0.088 0.912
41 H 0.077 0.923
42 H 0.074 0.926
43 H 0.074 0.926
44 H 0.092 0.908
45 H 0.091 0.909
46 H 0.109 0.891
47 H 0.116 0.884
48 H 0.279 0.721
49 H 0.132 0.868
50 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.728 1.481 4.906 31.153
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.272 5.272
3 C -0.064 4.064
4 C -0.151 4.151
5 C -0.177 4.177
6 C 0.049 3.951
7 H 0.078 0.922
8 C -0.022 4.022
9 H 0.077 0.923
10 C -0.166 4.166
11 C -0.014 4.014
12 N -0.355 5.355
13 C 0.318 3.682
14 O -0.394 6.394
15 C -0.116 4.116
16 C -0.161 4.161
17 C -0.080 4.080
18 C -0.211 4.211
19 C 0.110 3.890
20 O -0.124 6.124
21 C -0.463 4.463
22 H 0.124 0.876
23 C -0.141 4.141
24 N -0.519 5.519
25 Si 0.731 3.269
26 H -0.199 1.199
27 H -0.208 1.208
28 H -0.184 1.184
29 C -0.238 4.238
30 C -0.076 4.076
31 H 0.042 0.958
32 H 0.088 0.912
33 H 0.088 0.912
34 H 0.094 0.906
35 H 0.050 0.950
36 H 0.090 0.910
37 H 0.087 0.913
38 H 0.114 0.886
39 H 0.082 0.918
40 H 0.107 0.893
41 H 0.095 0.905
42 H 0.092 0.908
43 H 0.092 0.908
44 H 0.110 0.890
45 H 0.109 0.891
46 H 0.127 0.873
47 H 0.134 0.866
48 H 0.089 0.911
49 H 0.150 0.850
50 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -29.631 1.593 4.888 30.074
hybrid contribution 0.117 0.145 1.064 1.080
sum -29.514 1.738 5.952 30.159
Atomic orbital electron populations
1.22358 0.86704 1.02451 1.00357 1.60302 1.07320 1.12951 1.46595
1.21954 0.96005 0.88188 1.00203 1.21488 0.93851 1.00618 0.99114
1.21418 1.03426 0.94426 0.98433 1.20432 0.90529 0.89157 0.94948
0.92222 1.21978 0.93709 0.93786 0.92681 0.92263 1.23106 0.98479
0.94859 1.00153 1.22278 0.86177 0.96100 0.96865 1.48596 1.05312
1.32837 1.48762 1.20653 0.79599 0.85783 0.82189 1.90706 1.53678
1.48750 1.46312 1.20404 0.94559 0.96930 0.99694 1.18720 0.92158
1.04511 1.00712 1.20391 0.93235 0.97798 0.96554 1.20143 0.93104
1.05267 1.02540 1.19123 0.83632 0.92908 0.93345 1.83572 1.13969
1.67576 1.47270 1.20774 0.90665 1.28890 1.05993 0.87642 1.24464
0.95556 0.96948 0.97110 1.69646 1.09451 1.41748 1.31083 0.86180
0.78605 0.79910 0.82202 1.19918 1.20836 1.18368 1.21218 0.94394
1.05088 1.03098 1.20557 0.93389 0.96484 0.97136 0.95756 0.91239
0.91183 0.90564 0.95015 0.91039 0.91252 0.88580 0.91828 0.89317
0.90473 0.90771 0.90805 0.88988 0.89090 0.87271 0.86595 0.91124
0.84997 0.87578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.15 9.38 60.06 0.56 0.71 16
2 N -0.55 -3.97 4.34 -235.03 -1.02 -4.99 16
3 C 0.06 0.48 5.51 -4.11 -0.02 0.46 16
4 C -0.11 -1.06 6.19 -26.82 -0.17 -1.23 16
5 C -0.14 -1.54 5.48 -27.93 -0.15 -1.69 16
6 C 0.15 1.57 2.73 -69.27 -0.19 1.38 16
7 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16
8 C 0.09 0.66 2.74 -67.29 -0.18 0.47 16
9 H 0.06 0.42 8.02 -51.93 -0.42 0.00 16
10 C -0.13 -0.77 6.55 -24.10 -0.16 -0.93 16
11 C 0.11 0.83 6.65 -2.30 -0.02 0.82 16
12 N -0.62 -6.80 3.20 -165.39 -0.53 -7.33 16
13 C 0.53 7.56 7.61 -10.98 -0.08 7.48 16
14 O -0.52 -9.74 14.32 5.56 0.08 -9.66 16
15 C -0.08 -0.98 4.87 -29.03 -0.14 -1.12 16
16 C -0.16 -2.78 4.38 -104.57 -0.46 -3.24 16
17 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16
18 C -0.19 -4.01 9.99 -39.39 -0.39 -4.40 16
19 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16
20 O -0.22 -5.99 8.59 0.03 0.00 -5.99 16
21 C -0.39 -11.24 9.95 30.89 0.31 -10.93 16
22 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16
23 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16
24 N -0.88 -25.97 13.96 55.48 0.77 -25.19 16
25 Si 0.91 22.23 28.62 -169.99 -4.86 17.36 16
26 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
28 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16
29 C -0.22 -4.97 9.17 -39.39 -0.36 -5.33 16
30 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16
31 H 0.02 0.12 8.11 -51.93 -0.42 -0.30 16
32 H 0.07 0.32 8.00 -51.93 -0.42 -0.09 16
33 H 0.07 0.30 6.55 -51.93 -0.34 -0.04 16
34 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16
35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16
36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.10 1.41 5.71 -51.93 -0.30 1.11 16
39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
40 H 0.09 0.43 6.44 -51.93 -0.33 0.09 16
41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
43 H 0.07 0.47 7.57 -51.93 -0.39 0.07 16
44 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16
45 H 0.09 0.95 7.83 -51.93 -0.41 0.54 16
46 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16
47 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16
48 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16
49 H 0.13 3.13 5.64 -52.48 -0.30 2.83 16
50 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16
LS Contribution 391.92 15.07 5.91 5.91
Total: -1.00 -33.12 391.92 -10.03 -43.16
By element:
Atomic # 1 Polarization: 9.72 SS G_CDS: -7.80 Total: 1.92 kcal
Atomic # 6 Polarization: -12.61 SS G_CDS: -2.58 Total: -15.19 kcal
Atomic # 7 Polarization: -36.73 SS G_CDS: -0.77 Total: -37.51 kcal
Atomic # 8 Polarization: -15.73 SS G_CDS: 0.08 Total: -15.65 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -4.86 Total: 17.36 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -33.12 -10.03 -43.16 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000874838253.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.477 kcal
(2) G-P(sol) polarization free energy of solvation -33.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.680 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds