Wall clock time and date at job start Wed Apr 1 2020 03:32:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.46138 * 110.99696 * 2 1
4 4 C 1.53241 * 108.65998 * 187.40709 * 3 2 1
5 5 C 1.52587 * 108.34975 * 295.89355 * 4 3 2
6 6 C 1.51027 * 112.31916 * 54.36932 * 5 4 3
7 7 H 1.09006 * 106.71254 * 200.65217 * 6 5 4
8 8 C 1.45547 * 111.00149 * 128.11471 * 2 1 3
9 9 H 1.09002 * 110.38516 * 313.59541 * 8 2 1
10 10 C 1.55913 * 107.73164 * 74.32577 * 8 2 1
11 11 C 1.55042 * 101.22973 * 84.30463 * 10 8 2
12 12 N 1.46606 * 112.27522 * 84.25714 * 6 5 4
13 13 C 1.34774 * 125.93648 * 49.57241 * 12 6 5
14 14 O 1.21279 * 120.00493 * 359.71595 * 13 12 6
15 15 C 1.50706 * 119.99637 * 179.71941 * 13 12 6
16 16 C 1.50702 * 109.47088 * 179.97438 * 15 13 12
17 17 C 1.38311 * 119.92915 * 89.99653 * 16 15 13
18 18 C 1.38096 * 120.06782 * 180.02562 * 17 16 15
19 19 C 1.38883 * 119.93001 * 359.97438 * 18 17 16
20 20 O 1.35752 * 120.06733 * 179.72546 * 19 18 17
21 21 C 1.34835 * 116.99867 * 174.45565 * 20 19 18
22 22 H 1.08001 * 119.99908 * 5.03572 * 21 20 19
23 23 C 1.38654 * 119.99862 * 185.04415 * 21 20 19
24 24 N 1.31552 * 120.00015 * 179.97438 * 23 21 20
25 25 Si 1.86800 * 120.00013 * 359.97438 * 23 21 20
26 26 H 1.48498 * 109.47583 * 89.99816 * 25 23 21
27 27 H 1.48496 * 109.47072 * 210.00091 * 25 23 21
28 28 H 1.48500 * 109.47137 * 329.99829 * 25 23 21
29 29 C 1.38878 * 119.86281 * 0.02562 * 19 18 17
30 30 C 1.38101 * 119.93252 * 0.02562 * 29 19 18
31 31 H 1.09006 * 109.47169 * 291.87980 * 1 2 3
32 32 H 1.08996 * 109.47637 * 51.88196 * 1 2 3
33 33 H 1.09006 * 109.46972 * 171.88471 * 1 2 3
34 34 H 1.08992 * 109.60407 * 307.16272 * 3 2 1
35 35 H 1.09001 * 109.60269 * 67.65914 * 3 2 1
36 36 H 1.09001 * 109.68704 * 55.60691 * 4 3 2
37 37 H 1.08996 * 109.68933 * 176.13830 * 4 3 2
38 38 H 1.09004 * 108.93965 * 175.11497 * 5 4 3
39 39 H 1.08999 * 108.94051 * 293.81740 * 5 4 3
40 40 H 1.09003 * 111.06946 * 326.32105 * 10 8 2
41 41 H 1.09000 * 111.10601 * 202.31230 * 10 8 2
42 42 H 1.08997 * 110.36528 * 277.95451 * 11 10 8
43 43 H 1.09003 * 110.45550 * 155.68218 * 11 10 8
44 44 H 1.08992 * 109.47282 * 60.00082 * 15 13 12
45 45 H 1.08999 * 109.46898 * 299.99462 * 15 13 12
46 46 H 1.08001 * 119.96584 * 359.97438 * 17 16 15
47 47 H 1.07998 * 120.03699 * 179.97438 * 18 17 16
48 48 H 0.96998 * 120.00173 * 179.97438 * 24 23 21
49 49 H 1.08007 * 120.03391 * 179.97438 * 29 19 18
50 50 H 1.07994 * 119.96443 * 180.02562 * 30 29 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9926 1.3643 0.0000
4 6 3.5124 1.3062 -0.1872
5 6 4.1183 0.5965 1.0201
6 6 3.4989 -0.7602 1.2583
7 1 3.7004 -1.0186 2.2979
8 6 1.9906 -0.8387 1.0691
9 1 1.4689 -0.6311 2.0034
10 6 1.7862 -2.3260 0.6484
11 6 3.0437 -2.5682 -0.2256
12 7 4.1198 -1.8061 0.4398
13 6 5.4424 -2.0358 0.3199
14 8 6.2355 -1.3403 0.9184
15 6 5.9359 -3.1570 -0.5579
16 6 7.4418 -3.1997 -0.5192
17 6 8.0860 -3.9700 0.4320
18 6 9.4659 -4.0108 0.4704
19 6 10.2067 -3.2778 -0.4476
20 8 11.5632 -3.3116 -0.4088
21 6 12.2199 -2.6710 -1.3970
22 1 11.6697 -2.0942 -2.1256
23 6 13.6017 -2.7529 -1.4777
24 7 14.2424 -2.1284 -2.4421
25 14 14.5535 -3.7502 -0.2171
26 1 14.6909 -5.1497 -0.6944
27 1 15.9016 -3.1559 -0.0313
28 1 13.8245 -3.7379 1.0766
29 6 9.5568 -2.5054 -1.4014
30 6 8.1767 -2.4678 -1.4340
31 1 -0.3634 0.3830 0.9537
32 1 -0.3634 0.6343 -0.8084
33 1 -0.3633 -1.0174 -0.1451
34 1 1.5446 1.9280 -0.8182
35 1 1.7593 1.8456 0.9498
36 1 3.7496 0.7527 -1.0957
37 1 3.9126 2.3175 -0.2583
38 1 5.1889 0.4722 0.8569
39 1 3.9649 1.2122 1.9063
40 1 0.8739 -2.4462 0.0642
41 1 1.7812 -2.9828 1.5183
42 1 2.8816 -2.1922 -1.2358
43 1 3.2909 -3.6295 -0.2516
44 1 5.6038 -2.9893 -1.5824
45 1 5.5358 -4.1043 -0.1966
46 1 7.5094 -4.5394 1.1458
47 1 9.9684 -4.6121 1.2136
48 1 15.2091 -2.1854 -2.4984
49 1 10.1302 -1.9339 -2.1164
50 1 7.6708 -1.8677 -2.1758
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000874838253.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:32:15
Heat of formation + Delta-G solvation = -41.793682 kcal
Electronic energy + Delta-G solvation = -30209.992397 eV
Core-core repulsion = 26202.070696 eV
Total energy + Delta-G solvation = -4007.921701 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.81498 -40.90272 -39.70607 -38.24591 -36.74236 -34.79397 -34.51217 -33.19352
-31.83778 -31.59494 -30.04893 -28.36130 -27.38578 -26.79951 -24.50859 -24.21094
-23.70873 -22.71070 -22.22658 -20.71984 -19.81963 -19.40876 -19.07948 -17.82007
-17.48574 -16.83806 -16.74142 -16.44023 -16.22201 -15.91414 -15.78922 -15.59877
-15.46305 -15.15862 -14.98751 -14.41472 -14.39219 -14.28566 -14.13806 -14.09535
-13.96500 -13.56302 -13.13197 -13.10349 -12.99266 -12.82152 -12.56442 -12.51102
-12.49679 -12.41618 -12.32018 -12.15672 -11.94238 -11.84782 -11.47480 -11.32116
-11.28821 -10.92152 -10.60764 -9.79695 -9.54502 -9.16511 -8.98659 -8.50887
-6.23429 0.57816 0.60724 1.29611 1.34271 1.51105 1.72454 2.05151
2.27559 2.76660 2.89665 3.06251 3.14236 3.37914 3.60790 3.83667
3.89281 4.00713 4.02385 4.03628 4.08810 4.15396 4.24858 4.38135
4.43401 4.48974 4.53961 4.56302 4.60477 4.65216 4.67077 4.76890
4.80144 4.82020 4.85934 4.91817 4.96508 4.97975 5.05164 5.15909
5.22876 5.24304 5.25888 5.30178 5.36847 5.53960 5.58350 5.73362
5.79065 5.90413 6.17630 6.23601 6.23948 6.62434 6.83205 7.29156
7.57837 8.60933
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.025358 B = 0.002123 C = 0.002049
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1103.934879 B =13188.761563 C =13662.775018
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.554 5.554
3 C 0.069 3.931
4 C -0.108 4.108
5 C -0.138 4.138
6 C 0.149 3.851
7 H 0.047 0.953
8 C 0.090 3.910
9 H 0.068 0.932
10 C -0.117 4.117
11 C 0.101 3.899
12 N -0.612 5.612
13 C 0.525 3.475
14 O -0.577 6.577
15 C -0.073 4.073
16 C -0.136 4.136
17 C -0.058 4.058
18 C -0.193 4.193
19 C 0.118 3.882
20 O -0.246 6.246
21 C -0.400 4.400
22 H 0.079 0.921
23 C 0.008 3.992
24 N -0.923 5.923
25 Si 0.973 3.027
26 H -0.262 1.262
27 H -0.266 1.266
28 H -0.266 1.266
29 C -0.237 4.237
30 C -0.064 4.064
31 H 0.027 0.973
32 H 0.074 0.926
33 H 0.083 0.917
34 H 0.088 0.912
35 H 0.034 0.966
36 H 0.055 0.945
37 H 0.070 0.930
38 H 0.056 0.944
39 H 0.066 0.934
40 H 0.109 0.891
41 H 0.088 0.912
42 H 0.076 0.924
43 H 0.097 0.903
44 H 0.118 0.882
45 H 0.132 0.868
46 H 0.153 0.847
47 H 0.129 0.871
48 H 0.285 0.715
49 H 0.106 0.894
50 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -35.183 -0.482 5.963 35.688
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 N -0.280 5.280
3 C -0.059 4.059
4 C -0.146 4.146
5 C -0.176 4.176
6 C 0.045 3.955
7 H 0.065 0.935
8 C -0.019 4.019
9 H 0.086 0.914
10 C -0.155 4.155
11 C -0.021 4.021
12 N -0.346 5.346
13 C 0.315 3.685
14 O -0.457 6.457
15 C -0.112 4.112
16 C -0.137 4.137
17 C -0.076 4.076
18 C -0.212 4.212
19 C 0.070 3.930
20 O -0.154 6.154
21 C -0.476 4.476
22 H 0.096 0.904
23 C -0.190 4.190
24 N -0.564 5.564
25 Si 0.795 3.205
26 H -0.187 1.187
27 H -0.191 1.191
28 H -0.190 1.190
29 C -0.257 4.257
30 C -0.082 4.082
31 H 0.045 0.955
32 H 0.093 0.907
33 H 0.102 0.898
34 H 0.106 0.894
35 H 0.053 0.947
36 H 0.074 0.926
37 H 0.088 0.912
38 H 0.074 0.926
39 H 0.085 0.915
40 H 0.127 0.873
41 H 0.106 0.894
42 H 0.094 0.906
43 H 0.115 0.885
44 H 0.137 0.863
45 H 0.149 0.851
46 H 0.170 0.830
47 H 0.147 0.853
48 H 0.095 0.905
49 H 0.124 0.876
50 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -34.187 -0.386 5.930 34.700
hybrid contribution 1.089 0.813 0.747 1.551
sum -33.098 0.427 6.677 33.767
Atomic orbital electron populations
1.22416 0.85032 1.03539 1.00764 1.60340 1.08714 1.12464 1.46442
1.21891 0.94224 0.88922 1.00819 1.21426 0.95634 1.00122 0.97427
1.21352 1.01155 0.95714 0.99387 1.20540 0.92551 0.88259 0.94190
0.93476 1.21947 0.91344 0.95178 0.93429 0.91385 1.23122 0.98409
0.93484 1.00490 1.22587 0.85648 0.96889 0.96935 1.48598 1.05051
1.32877 1.48076 1.20785 0.80360 0.85538 0.81829 1.90709 1.55395
1.50755 1.48803 1.20501 0.90873 0.98463 1.01357 1.19279 0.95031
1.01189 0.98161 1.20920 0.92218 0.97502 0.96949 1.20500 0.94434
1.04506 1.01723 1.19671 0.82967 0.95007 0.95390 1.83510 1.15540
1.69004 1.47299 1.20708 0.91262 1.29285 1.06377 0.90389 1.25310
0.96287 0.98179 0.99224 1.69730 1.10067 1.43650 1.32989 0.85189
0.77467 0.78809 0.79044 1.18693 1.19067 1.19039 1.21230 0.96075
1.05430 1.02928 1.20865 0.91999 0.96981 0.98399 0.95465 0.90696
0.89794 0.89376 0.94744 0.92641 0.91183 0.92569 0.91521 0.87310
0.89387 0.90551 0.88496 0.86347 0.85055 0.82969 0.85303 0.90546
0.87620 0.85338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 9.38 127.69 1.20 1.39 16
2 N -0.55 -6.32 4.34 -897.51 -3.89 -10.21 16
3 C 0.07 0.90 5.51 86.53 0.48 1.37 16
4 C -0.11 -1.99 6.19 30.54 0.19 -1.80 16
5 C -0.14 -3.08 5.48 29.81 0.16 -2.92 16
6 C 0.15 2.82 2.73 44.07 0.12 2.94 16
7 H 0.05 1.01 8.12 -2.38 -0.02 0.99 16
8 C 0.09 1.07 2.74 45.92 0.13 1.20 16
9 H 0.07 0.73 8.02 -2.39 -0.02 0.71 16
10 C -0.12 -0.88 6.55 32.30 0.21 -0.67 16
11 C 0.10 1.10 6.65 86.85 0.58 1.67 16
12 N -0.61 -11.87 3.20 -795.58 -2.55 -14.41 16
13 C 0.52 13.87 7.61 87.66 0.67 14.54 16
14 O -0.58 -21.56 14.32 -3.03 -0.04 -21.60 16
15 C -0.07 -1.58 4.87 29.10 0.14 -1.43 16
16 C -0.14 -4.39 4.38 -19.83 -0.09 -4.48 16
17 C -0.06 -1.94 9.69 22.25 0.22 -1.73 16
18 C -0.19 -7.98 9.99 22.39 0.22 -7.76 16
19 C 0.12 5.98 6.65 22.58 0.15 6.13 16
20 O -0.25 -14.17 8.59 -22.81 -0.20 -14.37 16
21 C -0.40 -24.78 9.95 67.92 0.68 -24.10 16
22 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16
23 C 0.01 0.49 5.49 84.83 0.47 0.96 16
24 N -0.92 -56.98 13.96 21.61 0.30 -56.68 16
25 Si 0.97 47.25 28.62 68.60 1.96 49.21 16
26 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16
27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
28 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16
29 C -0.24 -11.38 9.17 22.39 0.21 -11.18 16
30 C -0.06 -2.47 9.69 22.25 0.22 -2.25 16
31 H 0.03 0.18 8.11 -2.38 -0.02 0.16 16
32 H 0.07 0.43 8.00 -2.39 -0.02 0.42 16
33 H 0.08 0.33 6.55 -2.38 -0.02 0.32 16
34 H 0.09 0.96 8.01 -2.39 -0.02 0.94 16
35 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16
36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
38 H 0.06 1.74 5.71 -2.39 -0.01 1.72 16
39 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16
40 H 0.11 0.45 6.44 -2.39 -0.02 0.44 16
41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16
42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
43 H 0.10 0.66 7.57 -2.39 -0.02 0.64 16
44 H 0.12 2.04 8.08 -2.39 -0.02 2.02 16
45 H 0.13 1.89 7.83 -2.39 -0.02 1.87 16
46 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16
47 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16
48 H 0.28 16.06 8.31 -92.71 -0.77 15.29 16
49 H 0.11 5.54 5.64 -2.91 -0.02 5.52 16
50 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16
Total: -1.00 -79.12 391.92 2.45 -76.67
By element:
Atomic # 1 Polarization: 18.55 SS G_CDS: 0.93 Total: 19.48 kcal
Atomic # 6 Polarization: -34.03 SS G_CDS: 5.94 Total: -28.09 kcal
Atomic # 7 Polarization: -75.16 SS G_CDS: -6.14 Total: -81.30 kcal
Atomic # 8 Polarization: -35.73 SS G_CDS: -0.24 Total: -35.97 kcal
Atomic # 14 Polarization: 47.25 SS G_CDS: 1.96 Total: 49.21 kcal
Total: -79.12 2.45 -76.67 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000874838253.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.874 kcal
(2) G-P(sol) polarization free energy of solvation -79.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.248 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.794 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds