Wall clock time and date at job start Wed Apr 1 2020 03:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47612 * 111.00004 * 2 1 4 4 C 1.52601 * 111.73386 * 178.13329 * 3 2 1 5 5 C 1.53891 * 111.18945 * 53.66928 * 4 3 2 6 6 C 1.51890 * 106.92483 * 304.79330 * 5 4 3 7 7 H 1.08996 * 109.28362 * 303.99105 * 6 5 4 8 8 C 1.45628 * 110.99715 * 238.95676 * 2 1 3 9 9 H 1.09001 * 110.81446 * 67.12783 * 8 2 1 10 10 C 1.53577 * 115.86871 * 299.64809 * 8 2 1 11 11 C 1.55331 * 101.79553 * 206.28936 * 10 8 2 12 12 N 1.45442 * 117.28007 * 178.62198 * 6 5 4 13 13 C 1.34767 * 126.42704 * 31.68139 * 12 6 5 14 14 O 1.21286 * 120.00085 * 359.71358 * 13 12 6 15 15 C 1.50701 * 120.00432 * 179.43534 * 13 12 6 16 16 C 1.50696 * 109.47451 * 180.02562 * 15 13 12 17 17 C 1.38307 * 119.93122 * 269.72962 * 16 15 13 18 18 C 1.38097 * 120.07269 * 179.72274 * 17 16 15 19 19 C 1.38885 * 119.92575 * 0.57094 * 18 17 16 20 20 O 1.35748 * 120.06682 * 179.68362 * 19 18 17 21 21 C 1.34834 * 117.00071 * 174.48717 * 20 19 18 22 22 H 1.07999 * 119.99613 * 5.04940 * 21 20 19 23 23 C 1.38651 * 120.00078 * 185.05679 * 21 20 19 24 24 N 1.31551 * 120.00253 * 179.97438 * 23 21 20 25 25 Si 1.86810 * 120.00031 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47127 * 90.00229 * 25 23 21 27 27 H 1.48495 * 109.47076 * 210.00241 * 25 23 21 28 28 H 1.48503 * 109.46872 * 329.99989 * 25 23 21 29 29 C 1.38876 * 119.86060 * 359.70064 * 19 18 17 30 30 C 1.38096 * 119.93566 * 0.02562 * 29 19 18 31 31 H 1.09002 * 109.47517 * 181.03820 * 1 2 3 32 32 H 1.09003 * 109.47380 * 301.04180 * 1 2 3 33 33 H 1.08999 * 109.47114 * 61.03953 * 1 2 3 34 34 H 1.08999 * 109.02848 * 298.70842 * 3 2 1 35 35 H 1.08999 * 109.03662 * 57.62841 * 3 2 1 36 36 H 1.09002 * 109.13584 * 174.10725 * 4 3 2 37 37 H 1.08998 * 109.13621 * 293.22866 * 4 3 2 38 38 H 1.09001 * 109.94970 * 64.35731 * 5 4 3 39 39 H 1.09000 * 109.95174 * 185.62315 * 5 4 3 40 40 H 1.09007 * 110.96175 * 88.16756 * 10 8 2 41 41 H 1.09000 * 110.96318 * 324.41886 * 10 8 2 42 42 H 1.09002 * 109.92796 * 263.08228 * 11 10 8 43 43 H 1.08999 * 109.92419 * 141.76449 * 11 10 8 44 44 H 1.09003 * 109.47048 * 300.00089 * 15 13 12 45 45 H 1.08999 * 109.46791 * 60.00055 * 15 13 12 46 46 H 1.08007 * 119.96142 * 359.97438 * 17 16 15 47 47 H 1.08001 * 120.03682 * 180.26785 * 18 17 16 48 48 H 0.96996 * 120.00285 * 179.97438 * 24 23 21 49 49 H 1.08007 * 120.02957 * 179.97438 * 29 19 18 50 50 H 1.07994 * 119.96664 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3781 0.0000 4 6 3.5232 1.3979 0.0462 5 6 4.1250 0.5417 -1.0821 6 6 3.5254 -0.8477 -0.9506 7 1 3.7200 -1.2304 0.0512 8 6 1.9908 -0.7011 -1.1649 9 1 1.7599 -0.1565 -2.0804 10 6 1.5927 -2.1790 -1.2914 11 6 2.7711 -2.7551 -2.1235 12 7 3.9224 -1.8410 -1.9360 13 6 5.1156 -1.9191 -2.5578 14 8 5.9806 -1.1045 -2.3146 15 6 5.3772 -3.0222 -3.5506 16 6 6.7747 -2.8848 -4.0975 17 6 6.9998 -2.1299 -5.2343 18 6 8.2800 -1.9974 -5.7348 19 6 9.3405 -2.6329 -5.1020 20 8 10.5992 -2.5098 -5.5952 21 6 11.5967 -3.0560 -4.8707 22 1 11.3686 -3.6327 -3.9866 23 6 12.9151 -2.8771 -5.2608 24 7 13.8883 -3.4096 -4.5537 25 14 13.3095 -1.8799 -6.7905 26 1 13.4861 -0.4530 -6.4192 27 1 14.5615 -2.3902 -7.4047 28 1 12.1945 -2.0041 -7.7634 29 6 9.1104 -3.3948 -3.9640 30 6 7.8287 -3.5188 -3.4652 31 1 -0.3634 -1.0275 0.0186 32 1 -0.3634 0.5299 0.8805 33 1 -0.3633 0.4976 -0.8991 34 1 1.6633 1.8872 -0.9038 35 1 1.6104 1.9077 0.8702 36 1 3.8706 2.4255 -0.0610 37 1 3.8566 1.0075 1.0077 38 1 3.8696 0.9706 -2.0511 39 1 5.2081 0.4887 -0.9714 40 1 0.6491 -2.2842 -1.8269 41 1 1.5385 -2.6535 -0.3116 42 1 2.4967 -2.7954 -3.1776 43 1 3.0264 -3.7523 -1.7649 44 1 5.2743 -3.9881 -3.0560 45 1 4.6587 -2.9538 -4.3674 46 1 6.1738 -1.6402 -5.7289 47 1 8.4557 -1.4042 -6.6200 48 1 14.8106 -3.2848 -4.8268 49 1 9.9331 -3.8906 -3.4699 50 1 7.6491 -4.1116 -2.5805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874838254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:19 Heat of formation + Delta-G solvation = -22.002205 kcal Electronic energy + Delta-G solvation = -29974.279568 eV Core-core repulsion = 25967.216090 eV Total energy + Delta-G solvation = -4007.063478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97840 -39.33747 -38.57649 -36.70917 -36.13483 -33.93633 -32.48629 -31.85324 -30.69717 -30.17819 -29.25001 -26.92406 -26.81023 -24.97544 -23.65392 -23.22547 -22.03955 -21.69536 -20.72251 -20.29231 -18.89865 -17.83639 -17.20668 -16.97086 -16.47030 -15.97360 -15.41489 -15.33285 -14.95107 -14.73782 -14.65369 -14.26237 -13.98713 -13.89096 -13.75295 -13.68075 -13.47965 -13.20383 -12.96458 -12.66375 -12.62299 -12.51453 -12.25784 -12.15585 -12.03355 -11.79429 -11.61588 -11.41830 -11.24388 -11.14300 -11.05936 -10.87541 -10.71190 -10.62773 -10.51440 -10.11437 -9.51028 -9.33234 -8.86918 -8.81184 -8.71469 -8.17966 -7.25165 -6.36929 -4.03184 2.19406 2.21446 2.76301 2.85278 3.25329 3.29525 3.43794 3.52605 3.96727 4.21497 4.27906 4.49360 4.54137 4.65300 4.67087 4.79382 4.89686 4.91180 4.92780 4.98140 5.03736 5.04643 5.15974 5.18600 5.25184 5.26301 5.29982 5.39891 5.43919 5.45835 5.46023 5.61516 5.64949 5.68397 5.71901 5.77347 5.80776 6.08283 6.09337 6.18762 6.30751 6.38702 6.54784 6.62147 6.66219 6.85168 7.08107 7.27867 7.36370 7.48161 7.67425 7.85759 8.09092 8.31507 8.98532 9.61537 10.70830 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.002073 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.830712 B =13505.016417 C =13976.067560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.520 5.520 3 C 0.050 3.950 4 C -0.116 4.116 5 C -0.122 4.122 6 C 0.144 3.856 7 H 0.078 0.922 8 C 0.058 3.942 9 H 0.057 0.943 10 C -0.122 4.122 11 C 0.105 3.895 12 N -0.624 5.624 13 C 0.528 3.472 14 O -0.514 6.514 15 C -0.077 4.077 16 C -0.161 4.161 17 C -0.062 4.062 18 C -0.191 4.191 19 C 0.162 3.838 20 O -0.218 6.218 21 C -0.388 4.388 22 H 0.106 0.894 23 C 0.062 3.938 24 N -0.881 5.881 25 Si 0.906 3.094 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.260 1.260 29 C -0.219 4.219 30 C -0.057 4.057 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.116 0.884 48 H 0.279 0.721 49 H 0.133 0.867 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.010 4.173 7.559 31.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.244 5.244 3 C -0.077 4.077 4 C -0.154 4.154 5 C -0.160 4.160 6 C 0.039 3.961 7 H 0.096 0.904 8 C -0.052 4.052 9 H 0.075 0.925 10 C -0.160 4.160 11 C -0.019 4.019 12 N -0.360 5.360 13 C 0.318 3.682 14 O -0.388 6.388 15 C -0.116 4.116 16 C -0.162 4.162 17 C -0.080 4.080 18 C -0.210 4.210 19 C 0.110 3.890 20 O -0.124 6.124 21 C -0.463 4.463 22 H 0.124 0.876 23 C -0.141 4.141 24 N -0.519 5.519 25 Si 0.731 3.269 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.184 1.184 29 C -0.238 4.238 30 C -0.076 4.076 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.127 0.873 47 H 0.134 0.866 48 H 0.089 0.911 49 H 0.150 0.850 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -28.925 4.434 7.903 30.312 hybrid contribution -0.095 0.718 -1.150 1.359 sum -29.020 5.153 6.753 30.238 Atomic orbital electron populations 1.22401 0.87200 1.02379 1.00722 1.62526 1.07946 1.14618 1.39359 1.22210 0.95950 0.88657 1.00897 1.21616 0.93687 1.00446 0.99673 1.21736 1.02605 0.93243 0.98442 1.21380 0.92159 0.89932 0.92611 0.90393 1.22707 0.95432 0.94792 0.92246 0.92511 1.22529 0.97518 0.94677 1.01315 1.22387 0.85354 0.93814 1.00295 1.48324 1.13680 1.30392 1.43650 1.20692 0.79719 0.86702 0.81110 1.90731 1.43193 1.41706 1.63142 1.20406 0.96629 0.97206 0.97388 1.18708 0.92914 1.05626 0.98930 1.20388 0.95419 0.96902 0.95298 1.20142 0.91237 1.06139 1.03501 1.19116 0.85344 0.92831 0.91724 1.83569 1.12261 1.69873 1.46653 1.20773 0.83995 1.31842 1.09740 0.87632 1.24466 0.93927 0.96971 0.98701 1.69645 0.99920 1.43521 1.38785 0.86180 0.78086 0.80091 0.82531 1.19903 1.20833 1.18386 1.21221 0.97470 1.05389 0.99712 1.20560 0.92038 0.97526 0.97448 0.91014 0.91209 0.95578 0.94816 0.90458 0.90843 0.91041 0.92055 0.89069 0.90174 0.89450 0.90988 0.90794 0.88978 0.89113 0.87306 0.86588 0.91112 0.84967 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.06 0.56 0.68 16 2 N -0.52 -3.94 4.95 -233.46 -1.16 -5.10 16 3 C 0.05 0.37 5.36 -3.64 -0.02 0.35 16 4 C -0.12 -1.00 5.99 -26.47 -0.16 -1.16 16 5 C -0.12 -1.39 5.03 -26.83 -0.14 -1.52 16 6 C 0.14 1.52 2.67 -67.66 -0.18 1.34 16 7 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 8 C 0.06 0.47 2.12 -66.69 -0.14 0.32 16 9 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 10 C -0.12 -0.73 5.75 -25.20 -0.14 -0.88 16 11 C 0.10 0.74 6.61 -1.87 -0.01 0.73 16 12 N -0.62 -6.87 3.28 -163.11 -0.53 -7.40 16 13 C 0.53 7.56 7.76 -10.99 -0.09 7.47 16 14 O -0.51 -9.64 14.25 5.55 0.08 -9.56 16 15 C -0.08 -0.97 5.08 -29.04 -0.15 -1.12 16 16 C -0.16 -2.77 4.38 -104.58 -0.46 -3.23 16 17 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 18 C -0.19 -3.98 9.99 -39.39 -0.39 -4.38 16 19 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 20 O -0.22 -5.96 8.59 0.04 0.00 -5.96 16 21 C -0.39 -11.24 9.95 30.88 0.31 -10.94 16 22 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 23 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 24 N -0.88 -25.96 13.96 55.48 0.77 -25.18 16 25 Si 0.91 22.21 28.62 -169.99 -4.86 17.35 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 29 C -0.22 -4.95 9.17 -39.40 -0.36 -5.31 16 30 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 31 H 0.07 0.34 7.44 -51.93 -0.39 -0.05 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.30 6.67 -51.93 -0.35 0.96 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 45 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 46 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 47 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 48 H 0.28 7.58 8.31 -40.82 -0.34 7.25 16 49 H 0.13 3.13 5.64 -52.48 -0.30 2.83 16 50 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -33.25 395.36 -10.28 -43.54 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.05 Total: 1.62 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.49 Total: -15.27 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.92 Total: -37.68 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.25 -10.28 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874838254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.535 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds