Wall clock time and date at job start Wed Apr 1 2020 03:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47612 * 111.00004 * 2 1 4 4 C 1.52601 * 111.73386 * 178.13329 * 3 2 1 5 5 C 1.53891 * 111.18945 * 53.66928 * 4 3 2 6 6 C 1.51890 * 106.92483 * 304.79330 * 5 4 3 7 7 H 1.08996 * 109.28362 * 303.99105 * 6 5 4 8 8 C 1.45628 * 110.99715 * 238.95676 * 2 1 3 9 9 H 1.09001 * 110.81446 * 67.12783 * 8 2 1 10 10 C 1.53577 * 115.86871 * 299.64809 * 8 2 1 11 11 C 1.55331 * 101.79553 * 206.28936 * 10 8 2 12 12 N 1.45442 * 117.28007 * 178.62198 * 6 5 4 13 13 C 1.34767 * 126.42704 * 31.68139 * 12 6 5 14 14 O 1.21286 * 120.00085 * 359.71358 * 13 12 6 15 15 C 1.50701 * 120.00432 * 179.43534 * 13 12 6 16 16 C 1.50696 * 109.47451 * 180.02562 * 15 13 12 17 17 C 1.38307 * 119.93122 * 269.72962 * 16 15 13 18 18 C 1.38097 * 120.07269 * 179.72274 * 17 16 15 19 19 C 1.38885 * 119.92575 * 0.57094 * 18 17 16 20 20 O 1.35748 * 120.06682 * 179.68362 * 19 18 17 21 21 C 1.34834 * 117.00071 * 174.48717 * 20 19 18 22 22 H 1.07999 * 119.99613 * 5.04940 * 21 20 19 23 23 C 1.38651 * 120.00078 * 185.05679 * 21 20 19 24 24 N 1.31551 * 120.00253 * 179.97438 * 23 21 20 25 25 Si 1.86810 * 120.00031 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47127 * 90.00229 * 25 23 21 27 27 H 1.48495 * 109.47076 * 210.00241 * 25 23 21 28 28 H 1.48503 * 109.46872 * 329.99989 * 25 23 21 29 29 C 1.38876 * 119.86060 * 359.70064 * 19 18 17 30 30 C 1.38096 * 119.93566 * 0.02562 * 29 19 18 31 31 H 1.09002 * 109.47517 * 181.03820 * 1 2 3 32 32 H 1.09003 * 109.47380 * 301.04180 * 1 2 3 33 33 H 1.08999 * 109.47114 * 61.03953 * 1 2 3 34 34 H 1.08999 * 109.02848 * 298.70842 * 3 2 1 35 35 H 1.08999 * 109.03662 * 57.62841 * 3 2 1 36 36 H 1.09002 * 109.13584 * 174.10725 * 4 3 2 37 37 H 1.08998 * 109.13621 * 293.22866 * 4 3 2 38 38 H 1.09001 * 109.94970 * 64.35731 * 5 4 3 39 39 H 1.09000 * 109.95174 * 185.62315 * 5 4 3 40 40 H 1.09007 * 110.96175 * 88.16756 * 10 8 2 41 41 H 1.09000 * 110.96318 * 324.41886 * 10 8 2 42 42 H 1.09002 * 109.92796 * 263.08228 * 11 10 8 43 43 H 1.08999 * 109.92419 * 141.76449 * 11 10 8 44 44 H 1.09003 * 109.47048 * 300.00089 * 15 13 12 45 45 H 1.08999 * 109.46791 * 60.00055 * 15 13 12 46 46 H 1.08007 * 119.96142 * 359.97438 * 17 16 15 47 47 H 1.08001 * 120.03682 * 180.26785 * 18 17 16 48 48 H 0.96996 * 120.00285 * 179.97438 * 24 23 21 49 49 H 1.08007 * 120.02957 * 179.97438 * 29 19 18 50 50 H 1.07994 * 119.96664 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3781 0.0000 4 6 3.5232 1.3979 0.0462 5 6 4.1250 0.5417 -1.0821 6 6 3.5254 -0.8477 -0.9506 7 1 3.7200 -1.2304 0.0512 8 6 1.9908 -0.7011 -1.1649 9 1 1.7599 -0.1565 -2.0804 10 6 1.5927 -2.1790 -1.2914 11 6 2.7711 -2.7551 -2.1235 12 7 3.9224 -1.8410 -1.9360 13 6 5.1156 -1.9191 -2.5578 14 8 5.9806 -1.1045 -2.3146 15 6 5.3772 -3.0222 -3.5506 16 6 6.7747 -2.8848 -4.0975 17 6 6.9998 -2.1299 -5.2343 18 6 8.2800 -1.9974 -5.7348 19 6 9.3405 -2.6329 -5.1020 20 8 10.5992 -2.5098 -5.5952 21 6 11.5967 -3.0560 -4.8707 22 1 11.3686 -3.6327 -3.9866 23 6 12.9151 -2.8771 -5.2608 24 7 13.8883 -3.4096 -4.5537 25 14 13.3095 -1.8799 -6.7905 26 1 13.4861 -0.4530 -6.4192 27 1 14.5615 -2.3902 -7.4047 28 1 12.1945 -2.0041 -7.7634 29 6 9.1104 -3.3948 -3.9640 30 6 7.8287 -3.5188 -3.4652 31 1 -0.3634 -1.0275 0.0186 32 1 -0.3634 0.5299 0.8805 33 1 -0.3633 0.4976 -0.8991 34 1 1.6633 1.8872 -0.9038 35 1 1.6104 1.9077 0.8702 36 1 3.8706 2.4255 -0.0610 37 1 3.8566 1.0075 1.0077 38 1 3.8696 0.9706 -2.0511 39 1 5.2081 0.4887 -0.9714 40 1 0.6491 -2.2842 -1.8269 41 1 1.5385 -2.6535 -0.3116 42 1 2.4967 -2.7954 -3.1776 43 1 3.0264 -3.7523 -1.7649 44 1 5.2743 -3.9881 -3.0560 45 1 4.6587 -2.9538 -4.3674 46 1 6.1738 -1.6402 -5.7289 47 1 8.4557 -1.4042 -6.6200 48 1 14.8106 -3.2848 -4.8268 49 1 9.9331 -3.8906 -3.4699 50 1 7.6491 -4.1116 -2.5805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874838254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:18 Heat of formation + Delta-G solvation = -43.737582 kcal Electronic energy + Delta-G solvation = -29975.222084 eV Core-core repulsion = 25967.216090 eV Total energy + Delta-G solvation = -4008.005994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79056 -40.91315 -39.77202 -38.27199 -37.00576 -34.66130 -34.50544 -33.17673 -31.84206 -31.63727 -29.93992 -28.36188 -27.42131 -26.81959 -24.41667 -24.03696 -23.71133 -22.39325 -22.12694 -21.07939 -19.93992 -19.76172 -19.08943 -17.88241 -17.26133 -16.90850 -16.60428 -16.38560 -15.99280 -15.92452 -15.74866 -15.60599 -15.53604 -15.23619 -14.99703 -14.68436 -14.46721 -14.35908 -14.20317 -14.07154 -14.01430 -13.50840 -13.24308 -13.08362 -13.03366 -12.79927 -12.58840 -12.46661 -12.44891 -12.40258 -12.31781 -12.01690 -11.93650 -11.84742 -11.73509 -11.29206 -11.27209 -10.92574 -10.58745 -9.80116 -9.60354 -9.41339 -8.99099 -8.51154 -6.23758 0.57408 0.60243 1.29135 1.34145 1.50449 1.71199 1.97466 2.27049 2.75233 2.95341 3.03737 3.16082 3.31345 3.64246 3.83103 3.84852 3.97977 4.02008 4.04928 4.10422 4.16006 4.21406 4.33342 4.33931 4.44550 4.46403 4.54299 4.55735 4.58759 4.64988 4.74618 4.78597 4.82482 4.83289 4.91773 4.96481 5.00892 5.03146 5.09293 5.19060 5.22025 5.23996 5.27029 5.35928 5.46839 5.56126 5.72902 5.78689 5.90110 5.99899 6.10848 6.23472 6.58937 6.82903 7.28008 7.57444 8.60650 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.002073 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.830712 B =13505.016417 C =13976.067560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.531 5.531 3 C 0.053 3.947 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.135 3.865 7 H 0.065 0.935 8 C 0.068 3.932 9 H 0.052 0.948 10 C -0.113 4.113 11 C 0.096 3.904 12 N -0.619 5.619 13 C 0.524 3.476 14 O -0.574 6.574 15 C -0.073 4.073 16 C -0.136 4.136 17 C -0.059 4.059 18 C -0.193 4.193 19 C 0.118 3.882 20 O -0.246 6.246 21 C -0.400 4.400 22 H 0.079 0.921 23 C 0.008 3.992 24 N -0.923 5.923 25 Si 0.973 3.027 26 H -0.268 1.268 27 H -0.264 1.264 28 H -0.262 1.262 29 C -0.238 4.238 30 C -0.064 4.064 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.035 0.965 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.131 0.869 46 H 0.152 0.848 47 H 0.128 0.872 48 H 0.285 0.715 49 H 0.106 0.894 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.021 4.238 6.864 35.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.255 5.255 3 C -0.074 4.074 4 C -0.150 4.150 5 C -0.157 4.157 6 C 0.031 3.969 7 H 0.083 0.917 8 C -0.042 4.042 9 H 0.070 0.930 10 C -0.151 4.151 11 C -0.026 4.026 12 N -0.354 5.354 13 C 0.315 3.685 14 O -0.452 6.452 15 C -0.112 4.112 16 C -0.137 4.137 17 C -0.076 4.076 18 C -0.212 4.212 19 C 0.069 3.931 20 O -0.153 6.153 21 C -0.476 4.476 22 H 0.096 0.904 23 C -0.190 4.190 24 N -0.564 5.564 25 Si 0.795 3.205 26 H -0.193 1.193 27 H -0.189 1.189 28 H -0.186 1.186 29 C -0.257 4.257 30 C -0.082 4.082 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.141 0.859 45 H 0.149 0.851 46 H 0.169 0.831 47 H 0.146 0.854 48 H 0.094 0.906 49 H 0.124 0.876 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -34.038 4.471 7.230 35.083 hybrid contribution 1.076 0.689 -0.752 1.482 sum -32.962 5.160 6.478 33.987 Atomic orbital electron populations 1.22458 0.85532 1.03367 1.01236 1.62527 1.09415 1.14443 1.39124 1.22180 0.94526 0.89097 1.01624 1.21581 0.95000 1.00159 0.98232 1.21629 1.00418 0.94801 0.98886 1.21435 0.94415 0.89147 0.91917 0.91684 1.22609 0.93049 0.96356 0.92175 0.93029 1.22551 0.98205 0.92575 1.01749 1.22764 0.84021 0.93646 1.02129 1.48346 1.13766 1.30858 1.42428 1.20870 0.80037 0.86317 0.81320 1.90737 1.45305 1.43927 1.65267 1.20508 0.94055 0.98095 0.98514 1.19281 0.94940 1.02105 0.97382 1.20916 0.95283 0.96154 0.95295 1.20497 0.91532 1.05464 1.03681 1.19670 0.85150 0.94892 0.93359 1.83507 1.13011 1.71586 1.47233 1.20706 0.85242 1.32152 1.09524 0.90381 1.25314 0.93559 0.98205 1.01955 1.69729 1.00457 1.45468 1.40774 0.85193 0.78217 0.78588 0.78536 1.19312 1.18852 1.18624 1.21242 0.98581 1.05936 0.99939 1.20885 0.91068 0.98046 0.98237 0.89815 0.90515 0.95244 0.94691 0.89034 0.90318 0.91569 0.93023 0.92910 0.87515 0.89221 0.88667 0.89092 0.85907 0.85085 0.83065 0.85356 0.90552 0.87586 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.40 127.69 1.20 1.36 16 2 N -0.53 -6.64 4.95 -892.53 -4.42 -11.06 16 3 C 0.05 0.69 5.36 86.03 0.46 1.15 16 4 C -0.11 -1.89 5.99 30.76 0.18 -1.71 16 5 C -0.12 -2.75 5.03 30.53 0.15 -2.59 16 6 C 0.14 2.69 2.67 45.74 0.12 2.81 16 7 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 8 C 0.07 0.89 2.12 46.26 0.10 0.99 16 9 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 10 C -0.11 -0.85 5.75 31.59 0.18 -0.67 16 11 C 0.10 0.89 6.61 86.85 0.57 1.47 16 12 N -0.62 -11.93 3.28 -788.36 -2.58 -14.51 16 13 C 0.52 13.73 7.76 87.66 0.68 14.41 16 14 O -0.57 -21.43 14.25 -3.05 -0.04 -21.47 16 15 C -0.07 -1.51 5.08 29.10 0.15 -1.36 16 16 C -0.14 -4.34 4.38 -19.83 -0.09 -4.42 16 17 C -0.06 -1.94 9.69 22.25 0.22 -1.73 16 18 C -0.19 -7.95 9.99 22.39 0.22 -7.72 16 19 C 0.12 5.94 6.65 22.58 0.15 6.09 16 20 O -0.25 -14.12 8.59 -22.76 -0.20 -14.32 16 21 C -0.40 -24.77 9.95 67.92 0.68 -24.09 16 22 H 0.08 5.08 5.44 -2.91 -0.02 5.07 16 23 C 0.01 0.47 5.49 84.83 0.47 0.94 16 24 N -0.92 -57.05 13.96 21.61 0.30 -56.75 16 25 Si 0.97 47.27 28.62 68.60 1.96 49.24 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 28 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 29 C -0.24 -11.33 9.17 22.39 0.21 -11.12 16 30 C -0.06 -2.43 9.69 22.25 0.22 -2.21 16 31 H 0.08 0.44 7.44 -2.39 -0.02 0.43 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.03 0.45 8.12 -2.39 -0.02 0.43 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.62 6.67 -2.39 -0.02 1.60 16 40 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 41 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.12 1.91 8.08 -2.39 -0.02 1.90 16 45 H 0.13 1.79 8.08 -2.39 -0.02 1.77 16 46 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 47 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 48 H 0.28 16.09 8.31 -92.71 -0.77 15.32 16 49 H 0.11 5.52 5.64 -2.91 -0.02 5.50 16 50 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -79.93 395.36 1.81 -78.11 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.92 Total: 19.17 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 5.87 Total: -28.41 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -6.70 Total: -82.32 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.24 Total: -35.79 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.96 Total: 49.24 kcal Total: -79.93 1.81 -78.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874838254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.377 kcal (2) G-P(sol) polarization free energy of solvation -79.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds