Wall clock time and date at job start Wed Apr 1 2020 03:35:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46431 * 110.99814 * 2 1
4 4 C 1.53376 * 108.66187 * 287.80499 * 3 2 1
5 5 C 1.53045 * 107.93498 * 291.77021 * 4 3 2
6 6 H 1.09003 * 109.44227 * 287.29104 * 5 4 3
7 7 C 1.50698 * 109.44489 * 167.36083 * 5 4 3
8 8 O 1.20826 * 119.99481 * 0.02562 * 7 5 4
9 9 O 1.34228 * 120.00166 * 179.97438 * 7 5 4
10 10 C 1.45196 * 116.99842 * 180.02562 * 9 7 5
11 11 C 1.53039 * 109.46012 * 270.02470 * 10 9 7
12 12 C 1.53186 * 109.31586 * 178.60333 * 11 10 9
13 13 N 1.46932 * 108.76545 * 54.65673 * 12 11 10
14 14 C 1.36932 * 120.62996 * 126.36239 * 13 12 11
15 15 H 1.08002 * 120.00206 * 207.69724 * 14 13 12
16 16 C 1.38816 * 120.00337 * 27.70389 * 14 13 12
17 17 N 1.31619 * 120.00073 * 17.34201 * 16 14 13
18 18 Si 1.86795 * 119.99904 * 197.35012 * 16 14 13
19 19 H 1.48507 * 109.47531 * 59.99865 * 18 16 14
20 20 H 1.48504 * 109.46934 * 179.97438 * 18 16 14
21 21 H 1.48496 * 109.47383 * 299.99447 * 18 16 14
22 22 C 1.46924 * 118.73589 * 306.38443 * 13 12 11
23 23 C 1.53047 * 109.45978 * 149.97328 * 10 9 7
24 24 C 1.50807 * 109.65553 * 47.30253 * 5 4 3
25 25 C 1.38617 * 118.12382 * 164.51742 * 24 5 4
26 26 C 1.38051 * 120.48696 * 179.56673 * 25 24 5
27 27 C 1.38307 * 119.88778 * 0.06806 * 26 25 24
28 28 C 1.37802 * 119.95614 * 0.12555 * 27 26 25
29 29 C 1.38377 * 122.01391 * 344.34541 * 24 5 4
30 30 H 1.09000 * 109.47224 * 182.77810 * 1 2 3
31 31 H 1.08997 * 109.47794 * 302.78018 * 1 2 3
32 32 H 1.09000 * 109.46943 * 62.78237 * 1 2 3
33 33 H 1.09000 * 109.60740 * 47.55750 * 3 2 1
34 34 H 1.08997 * 109.60234 * 168.05292 * 3 2 1
35 35 H 1.09006 * 109.77049 * 51.37541 * 4 3 2
36 36 H 1.08996 * 109.77089 * 172.16002 * 4 3 2
37 37 H 1.08994 * 109.46415 * 29.99721 * 10 9 7
38 38 H 1.09003 * 109.49762 * 298.57153 * 11 10 9
39 39 H 1.08998 * 109.49811 * 58.66143 * 11 10 9
40 40 H 1.09001 * 109.59865 * 294.87025 * 12 11 10
41 41 H 1.09004 * 109.59063 * 174.43403 * 12 11 10
42 42 H 0.96990 * 120.00432 * 180.02562 * 17 16 14
43 43 H 1.09007 * 109.58477 * 293.81941 * 22 13 12
44 44 H 1.08994 * 109.58354 * 173.39856 * 22 13 12
45 45 H 1.08992 * 109.49603 * 301.33281 * 23 10 9
46 46 H 1.09002 * 109.49818 * 61.43266 * 23 10 9
47 47 H 1.08001 * 119.75185 * 359.60130 * 25 24 5
48 48 H 1.07995 * 120.05194 * 180.02562 * 26 25 24
49 49 H 1.08001 * 120.02512 * 180.40644 * 27 26 25
50 50 H 1.08000 * 119.79496 * 179.90147 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9937 1.3671 0.0000
4 6 1.7547 1.9845 -1.3835
5 6 2.6506 1.2541 -2.3866
6 1 3.6871 1.5545 -2.2332
7 6 2.2276 1.6096 -3.7887
8 8 1.3050 2.3692 -3.9670
9 8 2.8763 1.0832 -4.8393
10 6 2.4149 1.4705 -6.1604
11 6 1.3365 0.4919 -6.6309
12 6 0.8273 0.9236 -8.0097
13 7 1.9737 1.0418 -8.9212
14 6 1.9850 0.3765 -10.1179
15 1 2.9241 0.0878 -10.5665
16 6 0.7894 0.0730 -10.7547
17 7 -0.3164 0.6990 -10.4117
18 14 0.7499 -1.2241 -12.0983
19 1 1.2014 -2.5256 -11.5435
20 1 -0.6359 -1.3604 -12.6142
21 1 1.6528 -0.8180 -13.2052
22 6 3.1078 1.8872 -8.5239
23 6 3.5912 1.4448 -7.1391
24 6 2.5260 -0.2355 -2.1873
25 6 2.9929 -1.0704 -3.1905
26 6 2.9112 -2.4418 -3.0550
27 6 2.3588 -2.9897 -1.9116
28 6 1.8889 -2.1661 -0.9117
29 6 1.9686 -0.7784 -1.0429
30 1 -0.3634 -1.0264 0.0498
31 1 -0.3634 0.5564 0.8640
32 1 -0.3633 0.4700 -0.9139
33 1 1.4779 1.9569 0.7577
34 1 3.0626 1.3485 0.2126
35 1 0.7091 1.8624 -1.6661
36 1 2.0107 3.0438 -1.3637
37 1 1.9987 2.4771 -6.1191
38 1 1.7587 -0.5109 -6.6964
39 1 0.5093 0.4932 -5.9211
40 1 0.3242 1.8871 -7.9285
41 1 0.1316 0.1769 -8.3927
42 1 -1.1518 0.4867 -10.8563
43 1 2.7906 2.9293 -8.4845
44 1 3.9167 1.7763 -9.2459
45 1 4.3689 2.1245 -6.7911
46 1 3.9920 0.4330 -7.1998
47 1 3.4241 -0.6447 -4.0845
48 1 3.2775 -3.0856 -3.8409
49 1 2.2998 -4.0623 -1.8004
50 1 1.4566 -2.5967 -0.0206
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000892862735.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:35:34
Heat of formation + Delta-G solvation = -46.364608 kcal
Electronic energy + Delta-G solvation = -31296.654217 eV
Core-core repulsion = 27288.534306 eV
Total energy + Delta-G solvation = -4008.119911 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.36251 -41.06296 -39.18334 -38.03288 -37.31217 -35.21416 -34.53593 -32.13565
-31.58855 -31.34527 -30.84982 -28.63388 -27.17443 -25.82151 -24.50721 -24.01131
-23.95510 -23.17149 -21.91878 -21.04895 -20.41983 -19.00041 -18.92269 -18.01353
-17.58557 -17.32244 -16.96094 -16.73662 -16.35239 -15.79687 -15.45838 -15.44008
-15.26400 -15.09283 -14.92263 -14.68638 -14.48996 -14.24606 -14.08521 -13.91393
-13.39743 -13.33176 -13.17701 -13.09812 -13.02070 -12.91111 -12.82800 -12.60217
-12.52592 -12.23076 -12.14055 -11.98043 -11.94382 -11.87723 -11.73087 -11.66125
-11.42020 -11.11169 -10.57592 -10.34723 -9.73318 -8.92647 -8.79587 -7.92344
-5.38521 0.27545 0.43331 1.07595 1.46308 1.49014 1.55660 1.56960
2.48942 2.69292 2.89618 3.23671 3.33039 3.48280 3.53433 3.64666
3.74045 3.83431 3.85992 4.10452 4.11702 4.21463 4.23773 4.31509
4.34140 4.44242 4.47727 4.52215 4.55191 4.59876 4.66844 4.68480
4.78341 4.81575 4.83681 4.84888 4.92150 4.96934 5.02638 5.11785
5.14177 5.20965 5.31758 5.36069 5.44994 5.49211 5.58939 5.62228
5.64794 5.82099 5.98330 6.33109 6.36228 6.62203 7.07527 7.77244
8.30158 9.15260
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.015852 B = 0.002877 C = 0.002697
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1765.906653 B = 9728.762462 C =10379.391599
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.504 5.504
3 C 0.060 3.940
4 C -0.141 4.141
5 C -0.031 4.031
6 H 0.140 0.860
7 C 0.466 3.534
8 O -0.535 6.535
9 O -0.343 6.343
10 C 0.104 3.896
11 C -0.135 4.135
12 C 0.185 3.815
13 N -0.610 5.610
14 C -0.266 4.266
15 H 0.075 0.925
16 C -0.051 4.051
17 N -0.937 5.937
18 Si 0.971 3.029
19 H -0.277 1.277
20 H -0.296 1.296
21 H -0.272 1.272
22 C 0.143 3.857
23 C -0.113 4.113
24 C -0.139 4.139
25 C -0.111 4.111
26 C -0.144 4.144
27 C -0.100 4.100
28 C -0.131 4.131
29 C 0.111 3.889
30 H 0.077 0.923
31 H 0.097 0.903
32 H 0.019 0.981
33 H 0.113 0.887
34 H 0.095 0.905
35 H 0.060 0.940
36 H 0.096 0.904
37 H 0.063 0.937
38 H 0.065 0.935
39 H 0.047 0.953
40 H -0.006 1.006
41 H 0.062 0.938
42 H 0.251 0.749
43 H 0.017 0.983
44 H 0.075 0.925
45 H 0.093 0.907
46 H 0.074 0.926
47 H 0.133 0.867
48 H 0.133 0.867
49 H 0.149 0.851
50 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.660 -2.839 24.541 25.865
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.220 5.220
3 C -0.067 4.067
4 C -0.179 4.179
5 C -0.049 4.049
6 H 0.158 0.842
7 C 0.310 3.690
8 O -0.425 6.425
9 O -0.260 6.260
10 C 0.049 3.951
11 C -0.174 4.174
12 C 0.059 3.941
13 N -0.333 5.333
14 C -0.396 4.396
15 H 0.092 0.908
16 C -0.247 4.247
17 N -0.583 5.583
18 Si 0.798 3.202
19 H -0.203 1.203
20 H -0.222 1.222
21 H -0.198 1.198
22 C 0.018 3.982
23 C -0.152 4.152
24 C -0.142 4.142
25 C -0.129 4.129
26 C -0.163 4.163
27 C -0.119 4.119
28 C -0.150 4.150
29 C 0.015 3.985
30 H 0.096 0.904
31 H 0.116 0.884
32 H 0.037 0.963
33 H 0.131 0.869
34 H 0.113 0.887
35 H 0.079 0.921
36 H 0.115 0.885
37 H 0.081 0.919
38 H 0.084 0.916
39 H 0.065 0.935
40 H 0.012 0.988
41 H 0.080 0.920
42 H 0.060 0.940
43 H 0.035 0.965
44 H 0.093 0.907
45 H 0.111 0.889
46 H 0.093 0.907
47 H 0.151 0.849
48 H 0.151 0.849
49 H 0.167 0.833
50 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 7.356 -2.800 24.833 26.051
hybrid contribution -0.924 0.101 -1.996 2.201
sum 6.432 -2.699 22.837 23.879
Atomic orbital electron populations
1.22563 0.84401 1.03483 1.01495 1.58859 1.08917 1.13615 1.40604
1.22379 1.02616 0.86553 0.95124 1.22162 0.99140 1.01199 0.95442
1.20138 1.04201 0.93801 0.86794 0.84230 1.24083 0.79703 0.76498
0.88677 1.90650 1.29349 1.35507 1.86964 1.86556 1.57975 1.65689
1.15766 1.22645 0.96095 0.97963 0.78348 1.22354 0.97401 0.99531
0.98126 1.20453 0.89714 0.97524 0.86421 1.44360 1.17751 1.53398
1.17799 1.19540 0.92975 1.29382 0.97715 0.90756 1.25870 0.96279
1.01755 1.00759 1.70185 0.99785 1.42650 1.45689 0.85296 0.76323
0.79483 0.79085 1.20254 1.22209 1.19772 1.21061 0.90626 0.92525
0.94016 1.22045 0.95894 1.03461 0.93822 1.19549 1.06157 0.93277
0.95232 1.21613 0.98344 0.94393 0.98571 1.21341 1.01104 0.94750
0.99083 1.21361 0.96556 1.01071 0.92864 1.21240 1.02243 0.91235
1.00298 1.18624 0.97816 0.93427 0.88646 0.90435 0.88413 0.96260
0.86902 0.88683 0.92113 0.88539 0.91926 0.91594 0.93465 0.98775
0.92005 0.94037 0.96537 0.90674 0.88888 0.90725 0.84910 0.84859
0.83336 0.83907
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.40 9.22 127.69 1.18 1.58 16
2 N -0.50 -8.70 4.74 -720.65 -3.42 -12.12 16
3 C 0.06 0.85 5.82 86.52 0.50 1.35 16
4 C -0.14 -2.67 4.82 30.74 0.15 -2.52 16
5 C -0.03 -0.69 2.78 -12.24 -0.03 -0.72 16
6 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16
7 C 0.47 14.30 7.05 71.24 0.50 14.80 16
8 O -0.54 -19.89 14.99 21.96 0.33 -19.56 16
9 O -0.34 -10.87 7.00 -51.40 -0.36 -11.22 16
10 C 0.10 3.80 2.42 30.62 0.07 3.87 16
11 C -0.13 -5.65 5.71 30.67 0.18 -5.47 16
12 C 0.19 9.44 5.31 86.36 0.46 9.90 16
13 N -0.61 -31.04 2.99 -699.09 -2.09 -33.13 16
14 C -0.27 -14.61 9.58 84.04 0.81 -13.81 16
15 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16
16 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16
17 N -0.94 -56.35 11.19 21.65 0.24 -56.10 16
18 Si 0.97 44.83 29.59 68.60 2.03 46.86 16
19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16
20 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16
21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16
22 C 0.14 5.86 6.52 86.36 0.56 6.42 16
23 C -0.11 -3.80 5.74 30.67 0.18 -3.63 16
24 C -0.14 -3.29 5.40 -19.71 -0.11 -3.40 16
25 C -0.11 -2.78 8.96 22.32 0.20 -2.58 16
26 C -0.14 -3.18 10.05 22.24 0.22 -2.95 16
27 C -0.10 -1.86 10.03 22.18 0.22 -1.64 16
28 C -0.13 -2.47 9.29 22.50 0.21 -2.27 16
29 C 0.11 2.35 5.12 38.30 0.20 2.54 16
30 H 0.08 1.12 7.70 -2.39 -0.02 1.10 16
31 H 0.10 1.06 8.05 -2.39 -0.02 1.04 16
32 H 0.02 0.37 6.60 -2.39 -0.02 0.36 16
33 H 0.11 1.08 7.98 -2.39 -0.02 1.07 16
34 H 0.09 1.17 8.11 -2.39 -0.02 1.15 16
35 H 0.06 1.45 6.03 -2.38 -0.01 1.44 16
36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16
37 H 0.06 2.51 7.15 -2.39 -0.02 2.49 16
38 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16
39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16
40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16
41 H 0.06 3.53 6.04 -2.38 -0.01 3.51 16
42 H 0.25 14.62 8.31 -92.72 -0.77 13.85 16
43 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16
44 H 0.07 2.88 7.93 -2.39 -0.02 2.86 16
45 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
46 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16
47 H 0.13 3.60 5.39 -2.91 -0.02 3.58 16
48 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16
49 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16
50 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16
Total: -1.00 -69.03 387.05 3.57 -65.47
By element:
Atomic # 1 Polarization: 19.88 SS G_CDS: 0.93 Total: 20.81 kcal
Atomic # 6 Polarization: -6.90 SS G_CDS: 5.91 Total: -0.99 kcal
Atomic # 7 Polarization: -96.09 SS G_CDS: -5.27 Total: -101.36 kcal
Atomic # 8 Polarization: -30.76 SS G_CDS: -0.03 Total: -30.79 kcal
Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal
Total: -69.03 3.57 -65.47 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892862735.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.101 kcal
(2) G-P(sol) polarization free energy of solvation -69.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.934 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds