Wall clock time and date at job start Wed Apr 1 2020 03:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46428 * 110.99992 * 2 1 4 4 C 1.53383 * 108.80004 * 72.23285 * 3 2 1 5 5 C 1.53039 * 107.94004 * 68.12718 * 4 3 2 6 6 H 1.09001 * 109.43793 * 72.70945 * 5 4 3 7 7 C 1.50701 * 109.44282 * 192.63597 * 5 4 3 8 8 O 1.20828 * 119.99715 * 359.97438 * 7 5 4 9 9 O 1.34226 * 120.00006 * 180.02562 * 7 5 4 10 10 C 1.45203 * 116.99723 * 179.97438 * 9 7 5 11 11 C 1.53048 * 109.45776 * 270.06586 * 10 9 7 12 12 C 1.53189 * 109.31052 * 178.61561 * 11 10 9 13 13 N 1.46923 * 108.77712 * 54.63498 * 12 11 10 14 14 C 1.36942 * 120.63182 * 126.41495 * 13 12 11 15 15 H 1.08004 * 119.99867 * 207.66698 * 14 13 12 16 16 C 1.38806 * 119.99758 * 27.66332 * 14 13 12 17 17 N 1.31616 * 120.00600 * 17.36691 * 16 14 13 18 18 Si 1.86806 * 119.99915 * 197.36907 * 16 14 13 19 19 H 1.48508 * 109.47044 * 59.99817 * 18 16 14 20 20 H 1.48499 * 109.47265 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46979 * 299.99998 * 18 16 14 22 22 C 1.46928 * 118.73950 * 306.39316 * 13 12 11 23 23 C 1.53040 * 109.45985 * 150.00032 * 10 9 7 24 24 C 1.50804 * 109.66174 * 312.69146 * 5 4 3 25 25 C 1.38612 * 118.13588 * 195.69341 * 24 5 4 26 26 C 1.38055 * 120.49005 * 180.24088 * 25 24 5 27 27 C 1.38313 * 119.88868 * 0.06871 * 26 25 24 28 28 C 1.37804 * 119.95278 * 359.85286 * 27 26 25 29 29 C 1.38376 * 122.00611 * 15.74263 * 24 5 4 30 30 H 1.09004 * 109.46725 * 59.99809 * 1 2 3 31 31 H 1.08996 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46978 * 300.00435 * 1 2 3 33 33 H 1.08995 * 109.60324 * 312.39747 * 3 2 1 34 34 H 1.08999 * 109.60306 * 192.06344 * 3 2 1 35 35 H 1.08990 * 109.77047 * 187.74218 * 4 3 2 36 36 H 1.09007 * 109.76347 * 308.46479 * 4 3 2 37 37 H 1.09002 * 109.46126 * 30.02301 * 10 9 7 38 38 H 1.08991 * 109.49818 * 298.56558 * 11 10 9 39 39 H 1.09003 * 109.49661 * 58.67021 * 11 10 9 40 40 H 1.09006 * 109.58952 * 294.84746 * 12 11 10 41 41 H 1.08996 * 109.59085 * 174.42753 * 12 11 10 42 42 H 0.96996 * 120.00514 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58536 * 293.81971 * 22 13 12 44 44 H 1.09001 * 109.58874 * 173.39479 * 22 13 12 45 45 H 1.09000 * 109.49357 * 301.33766 * 23 10 9 46 46 H 1.09002 * 109.49972 * 61.43272 * 23 10 9 47 47 H 1.08005 * 119.75564 * 0.26387 * 25 24 5 48 48 H 1.07997 * 120.05338 * 180.02562 * 26 25 24 49 49 H 1.08003 * 120.02210 * 179.88219 * 27 26 25 50 50 H 1.08002 * 119.79157 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 1.7573 1.9873 1.3827 5 6 2.6521 1.2565 2.3865 6 1 3.6891 1.5543 2.2318 7 6 2.2308 1.6155 3.7882 8 8 1.3102 2.3776 3.9658 9 8 2.8790 1.0894 4.8393 10 6 2.4193 1.4801 6.1600 11 6 3.1754 2.7311 6.6136 12 6 2.6636 3.1604 7.9922 13 7 2.7742 2.0213 8.9135 14 6 3.4368 2.1494 10.1051 15 1 3.9033 1.2875 10.5589 16 6 3.5089 3.3870 10.7295 17 7 2.6797 4.3485 10.3827 18 14 4.7829 3.6880 12.0621 19 1 6.1432 3.4899 11.5003 20 1 4.6535 5.0791 12.5654 21 1 4.5651 2.7345 13.1795 22 6 2.1600 0.7422 8.5323 23 6 2.6774 0.3399 7.1477 24 6 2.5238 -0.2331 2.1899 25 6 2.9852 -1.0673 3.1962 26 6 2.8964 -2.4388 3.0649 27 6 2.3446 -2.9874 1.9214 28 6 1.8823 -2.1644 0.9174 29 6 1.9659 -0.7767 1.0462 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.4785 1.9565 -0.7583 34 1 3.0623 1.3486 -0.2146 35 1 2.0157 3.0459 1.3610 36 1 0.7113 1.8690 1.6658 37 1 1.3512 1.6947 6.1241 38 1 4.2410 2.5103 6.6737 39 1 3.0099 3.5359 5.8973 40 1 1.6208 3.4682 7.9152 41 1 3.2651 3.9902 8.3632 42 1 2.7298 5.2132 10.8193 43 1 1.0761 0.8527 8.4994 44 1 2.4293 -0.0237 9.2597 45 1 2.1576 -0.5572 6.8115 46 1 3.7478 0.1416 7.2028 47 1 3.4172 -0.6413 4.0897 48 1 3.2578 -3.0821 3.8534 49 1 2.2758 -4.0600 1.8156 50 1 1.4523 -2.5956 0.0254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892862736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:38 Heat of formation + Delta-G solvation = -30.666527 kcal Electronic energy + Delta-G solvation = -31092.618424 eV Core-core repulsion = 27085.179233 eV Total energy + Delta-G solvation = -4007.439191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.35022 -39.95290 -37.63392 -37.16704 -35.85263 -34.27466 -32.69671 -30.66778 -30.30515 -30.06276 -29.73454 -27.80656 -25.51999 -24.76617 -23.53195 -22.86108 -22.32262 -21.86715 -20.71384 -19.64109 -19.30727 -17.84920 -17.05578 -16.90999 -16.56551 -16.38742 -15.85814 -15.32041 -14.87504 -14.74130 -14.48372 -14.24036 -13.98712 -13.64932 -13.47807 -13.39890 -13.19752 -13.01013 -12.70078 -12.65141 -12.58424 -12.35707 -12.30075 -12.14546 -11.64165 -11.53056 -11.25024 -11.19098 -11.10586 -10.93172 -10.74854 -10.73137 -10.39046 -10.35732 -10.25433 -9.92723 -9.73374 -9.57144 -9.42850 -8.90755 -8.50690 -8.16932 -6.76147 -5.83458 -3.26354 1.09131 1.23860 2.31345 2.78546 3.36610 3.42261 3.42543 3.43632 3.66826 4.24080 4.34899 4.45978 4.52796 4.69567 4.89725 4.92910 4.98667 5.03297 5.13270 5.17287 5.21766 5.28523 5.33847 5.34853 5.39556 5.42831 5.47607 5.49821 5.52327 5.66348 5.70232 5.87868 5.92186 5.98956 6.11232 6.17414 6.23503 6.27520 6.42222 6.43492 6.48925 6.55778 6.59094 6.66363 6.69232 6.83370 6.90832 7.11779 7.27988 7.58197 7.75166 7.91204 8.39338 9.15239 9.78319 10.34495 11.25510 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.002580 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.619419 B =10851.982044 C =11656.075440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.502 5.502 3 C 0.056 3.944 4 C -0.144 4.144 5 C -0.037 4.037 6 H 0.118 0.882 7 C 0.469 3.531 8 O -0.503 6.503 9 O -0.353 6.353 10 C 0.096 3.904 11 C -0.153 4.153 12 C 0.175 3.825 13 N -0.592 5.592 14 C -0.257 4.257 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.148 3.852 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.094 4.094 26 C -0.134 4.134 27 C -0.103 4.103 28 C -0.127 4.127 29 C 0.118 3.882 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.094 0.906 42 H 0.256 0.744 43 H 0.021 0.979 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.147 0.853 48 H 0.125 0.875 49 H 0.123 0.877 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 -10.834 -22.445 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.218 5.218 3 C -0.071 4.071 4 C -0.183 4.183 5 C -0.057 4.057 6 H 0.136 0.864 7 C 0.311 3.689 8 O -0.391 6.391 9 O -0.270 6.270 10 C 0.043 3.957 11 C -0.192 4.192 12 C 0.049 3.951 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.021 3.979 23 C -0.167 4.167 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.152 4.152 27 C -0.121 4.121 28 C -0.147 4.147 29 C 0.022 3.978 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.165 0.835 48 H 0.143 0.857 49 H 0.141 0.859 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.603 -10.605 -22.717 25.122 hybrid contribution 0.377 0.717 1.412 1.628 sum -1.226 -9.888 -21.305 23.520 Atomic orbital electron populations 1.22520 0.85021 1.02890 1.01578 1.58849 1.08499 1.13174 1.41322 1.22263 1.01697 0.87115 0.96019 1.22148 1.00821 1.00643 0.94705 1.20000 1.02802 0.93436 0.89412 0.86446 1.23201 0.80245 0.77774 0.87684 1.90658 1.28372 1.33552 1.86504 1.86508 1.58404 1.65610 1.16527 1.22963 0.99427 0.96593 0.76733 1.22662 1.00577 0.95231 1.00769 1.20766 0.98591 0.91487 0.84277 1.44120 1.62418 1.06662 1.18270 1.19150 1.26410 0.95316 0.97729 0.91491 1.25062 0.98458 0.97835 0.98203 1.70016 1.35776 1.04432 1.44411 0.86346 0.81676 0.77045 0.81556 1.20961 1.21599 1.20801 1.20883 0.95052 0.90001 0.91929 1.22235 1.02576 0.95780 0.96095 1.19487 1.05104 0.93346 0.94622 1.21638 0.97264 0.93533 0.98794 1.21128 1.00890 0.94991 0.98231 1.21055 0.97802 0.99657 0.93630 1.20963 1.02686 0.91444 0.99603 1.18450 0.98167 0.92692 0.88532 0.90603 0.90862 0.94327 0.89207 0.89705 0.89511 0.89903 0.90445 0.91667 0.92878 0.96036 0.88797 0.93442 0.96157 0.91784 0.92284 0.91094 0.83540 0.85741 0.85858 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.27 60.07 0.56 0.76 16 2 N -0.50 -4.70 4.76 -179.11 -0.85 -5.55 16 3 C 0.06 0.46 5.81 -3.88 -0.02 0.44 16 4 C -0.14 -1.46 4.82 -26.51 -0.13 -1.59 16 5 C -0.04 -0.44 2.79 -92.85 -0.26 -0.70 16 6 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 7 C 0.47 7.25 7.05 36.01 0.25 7.50 16 8 O -0.50 -9.21 14.99 -18.75 -0.28 -9.49 16 9 O -0.35 -5.70 6.99 -39.25 -0.27 -5.97 16 10 C 0.10 1.77 2.41 -26.69 -0.06 1.70 16 11 C -0.15 -3.09 5.72 -26.61 -0.15 -3.25 16 12 C 0.17 4.25 5.31 -3.71 -0.02 4.23 16 13 N -0.59 -14.82 3.00 -172.32 -0.52 -15.34 16 14 C -0.26 -6.99 9.59 -15.06 -0.14 -7.13 16 15 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 16 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 17 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 18 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 23 C -0.13 -2.24 5.74 -26.61 -0.15 -2.39 16 24 C -0.12 -1.46 5.40 -104.38 -0.56 -2.02 16 25 C -0.09 -1.13 8.96 -39.51 -0.35 -1.49 16 26 C -0.13 -1.40 10.05 -39.62 -0.40 -1.79 16 27 C -0.10 -0.96 10.03 -39.71 -0.40 -1.36 16 28 C -0.13 -1.24 9.24 -39.22 -0.36 -1.61 16 29 C 0.12 1.27 5.12 -83.83 -0.43 0.84 16 30 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.07 0.55 7.62 -51.93 -0.40 0.15 16 32 H 0.04 0.36 6.52 -51.93 -0.34 0.02 16 33 H 0.09 0.57 8.02 -51.93 -0.42 0.16 16 34 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.97 6.00 -51.93 -0.31 0.66 16 37 H 0.08 1.54 7.16 -51.93 -0.37 1.17 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 2.53 6.04 -51.93 -0.31 2.22 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.15 1.89 5.38 -52.48 -0.28 1.61 16 48 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 49 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 50 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -31.13 386.94 -11.13 -42.26 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.88 Total: 2.09 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.75 Total: -4.79 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.75 Total: -46.46 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.56 Total: -15.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.13 -11.13 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892862736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.596 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds