Wall clock time and date at job start Wed Apr 1 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46428 * 110.99992 * 2 1 4 4 C 1.53383 * 108.80004 * 72.23285 * 3 2 1 5 5 C 1.53039 * 107.94004 * 68.12718 * 4 3 2 6 6 H 1.09001 * 109.43793 * 72.70945 * 5 4 3 7 7 C 1.50701 * 109.44282 * 192.63597 * 5 4 3 8 8 O 1.20828 * 119.99715 * 359.97438 * 7 5 4 9 9 O 1.34226 * 120.00006 * 180.02562 * 7 5 4 10 10 C 1.45203 * 116.99723 * 179.97438 * 9 7 5 11 11 C 1.53048 * 109.45776 * 270.06586 * 10 9 7 12 12 C 1.53189 * 109.31052 * 178.61561 * 11 10 9 13 13 N 1.46923 * 108.77712 * 54.63498 * 12 11 10 14 14 C 1.36942 * 120.63182 * 126.41495 * 13 12 11 15 15 H 1.08004 * 119.99867 * 207.66698 * 14 13 12 16 16 C 1.38806 * 119.99758 * 27.66332 * 14 13 12 17 17 N 1.31616 * 120.00600 * 17.36691 * 16 14 13 18 18 Si 1.86806 * 119.99915 * 197.36907 * 16 14 13 19 19 H 1.48508 * 109.47044 * 59.99817 * 18 16 14 20 20 H 1.48499 * 109.47265 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46979 * 299.99998 * 18 16 14 22 22 C 1.46928 * 118.73950 * 306.39316 * 13 12 11 23 23 C 1.53040 * 109.45985 * 150.00032 * 10 9 7 24 24 C 1.50804 * 109.66174 * 312.69146 * 5 4 3 25 25 C 1.38612 * 118.13588 * 195.69341 * 24 5 4 26 26 C 1.38055 * 120.49005 * 180.24088 * 25 24 5 27 27 C 1.38313 * 119.88868 * 0.06871 * 26 25 24 28 28 C 1.37804 * 119.95278 * 359.85286 * 27 26 25 29 29 C 1.38376 * 122.00611 * 15.74263 * 24 5 4 30 30 H 1.09004 * 109.46725 * 59.99809 * 1 2 3 31 31 H 1.08996 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46978 * 300.00435 * 1 2 3 33 33 H 1.08995 * 109.60324 * 312.39747 * 3 2 1 34 34 H 1.08999 * 109.60306 * 192.06344 * 3 2 1 35 35 H 1.08990 * 109.77047 * 187.74218 * 4 3 2 36 36 H 1.09007 * 109.76347 * 308.46479 * 4 3 2 37 37 H 1.09002 * 109.46126 * 30.02301 * 10 9 7 38 38 H 1.08991 * 109.49818 * 298.56558 * 11 10 9 39 39 H 1.09003 * 109.49661 * 58.67021 * 11 10 9 40 40 H 1.09006 * 109.58952 * 294.84746 * 12 11 10 41 41 H 1.08996 * 109.59085 * 174.42753 * 12 11 10 42 42 H 0.96996 * 120.00514 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58536 * 293.81971 * 22 13 12 44 44 H 1.09001 * 109.58874 * 173.39479 * 22 13 12 45 45 H 1.09000 * 109.49357 * 301.33766 * 23 10 9 46 46 H 1.09002 * 109.49972 * 61.43272 * 23 10 9 47 47 H 1.08005 * 119.75564 * 0.26387 * 25 24 5 48 48 H 1.07997 * 120.05338 * 180.02562 * 26 25 24 49 49 H 1.08003 * 120.02210 * 179.88219 * 27 26 25 50 50 H 1.08002 * 119.79157 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 1.7573 1.9873 1.3827 5 6 2.6521 1.2565 2.3865 6 1 3.6891 1.5543 2.2318 7 6 2.2308 1.6155 3.7882 8 8 1.3102 2.3776 3.9658 9 8 2.8790 1.0894 4.8393 10 6 2.4193 1.4801 6.1600 11 6 3.1754 2.7311 6.6136 12 6 2.6636 3.1604 7.9922 13 7 2.7742 2.0213 8.9135 14 6 3.4368 2.1494 10.1051 15 1 3.9033 1.2875 10.5589 16 6 3.5089 3.3870 10.7295 17 7 2.6797 4.3485 10.3827 18 14 4.7829 3.6880 12.0621 19 1 6.1432 3.4899 11.5003 20 1 4.6535 5.0791 12.5654 21 1 4.5651 2.7345 13.1795 22 6 2.1600 0.7422 8.5323 23 6 2.6774 0.3399 7.1477 24 6 2.5238 -0.2331 2.1899 25 6 2.9852 -1.0673 3.1962 26 6 2.8964 -2.4388 3.0649 27 6 2.3446 -2.9874 1.9214 28 6 1.8823 -2.1644 0.9174 29 6 1.9659 -0.7767 1.0462 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.4785 1.9565 -0.7583 34 1 3.0623 1.3486 -0.2146 35 1 2.0157 3.0459 1.3610 36 1 0.7113 1.8690 1.6658 37 1 1.3512 1.6947 6.1241 38 1 4.2410 2.5103 6.6737 39 1 3.0099 3.5359 5.8973 40 1 1.6208 3.4682 7.9152 41 1 3.2651 3.9902 8.3632 42 1 2.7298 5.2132 10.8193 43 1 1.0761 0.8527 8.4994 44 1 2.4293 -0.0237 9.2597 45 1 2.1576 -0.5572 6.8115 46 1 3.7478 0.1416 7.2028 47 1 3.4172 -0.6413 4.0897 48 1 3.2578 -3.0821 3.8534 49 1 2.2758 -4.0600 1.8156 50 1 1.4523 -2.5956 0.0254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892862736.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:37 Heat of formation + Delta-G solvation = -46.481585 kcal Electronic energy + Delta-G solvation = -31093.304216 eV Core-core repulsion = 27085.179233 eV Total energy + Delta-G solvation = -4008.124983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36054 -41.06037 -39.18081 -38.02421 -37.31120 -35.21716 -34.53779 -32.13404 -31.58375 -31.34071 -30.83216 -28.63092 -27.17507 -25.82502 -24.48233 -24.02769 -23.95811 -23.16459 -21.88396 -21.05859 -20.42201 -19.01523 -18.91034 -17.91629 -17.74325 -17.29631 -16.89654 -16.74482 -16.36407 -15.76890 -15.46169 -15.44015 -15.34838 -14.96610 -14.95266 -14.59399 -14.55962 -14.31367 -14.02315 -13.90945 -13.39102 -13.32918 -13.17466 -13.07069 -13.05378 -12.90204 -12.82167 -12.60040 -12.44034 -12.29118 -12.11392 -12.01403 -11.97301 -11.86873 -11.73838 -11.64527 -11.41765 -11.09720 -10.57615 -10.34367 -9.71929 -8.91647 -8.79654 -7.92451 -5.38674 0.29347 0.45021 1.07214 1.46388 1.49017 1.55532 1.56728 2.48864 2.70985 2.90349 3.23528 3.32578 3.48459 3.53647 3.63993 3.74478 3.83029 3.85882 4.10266 4.10781 4.21776 4.25651 4.32471 4.34218 4.44040 4.48726 4.52530 4.56132 4.61047 4.67587 4.69160 4.78358 4.81989 4.83862 4.85301 4.91729 4.97614 5.01943 5.11588 5.15386 5.20953 5.32150 5.37231 5.45789 5.50854 5.59183 5.62513 5.66238 5.84274 5.98869 6.33178 6.36869 6.61803 7.07615 7.77160 8.30021 9.15197 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.002580 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.619419 B =10851.982044 C =11656.075440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.503 5.503 3 C 0.060 3.940 4 C -0.140 4.140 5 C -0.032 4.032 6 H 0.134 0.866 7 C 0.467 3.533 8 O -0.535 6.535 9 O -0.343 6.343 10 C 0.104 3.896 11 C -0.139 4.139 12 C 0.184 3.816 13 N -0.610 5.610 14 C -0.266 4.266 15 H 0.075 0.925 16 C -0.052 4.052 17 N -0.938 5.938 18 Si 0.971 3.029 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.144 3.856 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.112 4.112 26 C -0.141 4.141 27 C -0.099 4.099 28 C -0.131 4.131 29 C 0.110 3.890 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.021 0.979 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.054 0.946 40 H -0.006 1.006 41 H 0.063 0.937 42 H 0.251 0.749 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.134 0.866 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 -13.062 -24.343 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.219 5.219 3 C -0.067 4.067 4 C -0.179 4.179 5 C -0.051 4.051 6 H 0.152 0.848 7 C 0.311 3.689 8 O -0.425 6.425 9 O -0.260 6.260 10 C 0.050 3.950 11 C -0.178 4.178 12 C 0.058 3.942 13 N -0.333 5.333 14 C -0.396 4.396 15 H 0.092 0.908 16 C -0.247 4.247 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.198 1.198 22 C 0.018 3.982 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.159 4.159 27 C -0.118 4.118 28 C -0.150 4.150 29 C 0.014 3.986 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.012 0.988 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.033 0.967 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.152 0.848 48 H 0.157 0.843 49 H 0.168 0.832 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.747 -12.875 -24.639 27.810 hybrid contribution 0.045 1.346 1.933 2.356 sum -0.701 -11.528 -22.706 25.475 Atomic orbital electron populations 1.22579 0.84314 1.03370 1.01731 1.58945 1.09057 1.13470 1.40455 1.22348 1.02525 0.86758 0.95085 1.22145 0.99278 1.01007 0.95486 1.20124 1.03919 0.94183 0.86852 0.84835 1.24062 0.79462 0.76734 0.88650 1.90649 1.29812 1.35052 1.86960 1.86557 1.58263 1.65378 1.15758 1.22638 0.97959 0.96059 0.78358 1.22404 1.00639 0.96423 0.98324 1.20468 0.96437 0.90957 0.86335 1.44371 1.62960 1.07968 1.18037 1.19541 1.26216 0.95618 0.98229 0.90767 1.25871 1.00315 0.97735 1.00766 1.70183 1.37572 1.04646 1.45953 0.85292 0.79278 0.76519 0.79067 1.20250 1.22192 1.19787 1.21049 0.94612 0.88423 0.94113 1.22031 1.03053 0.96306 0.93750 1.19533 1.06332 0.92986 0.95428 1.21635 0.98307 0.94507 0.98612 1.21361 1.00850 0.94519 0.99190 1.21385 0.96478 1.01092 0.92797 1.21247 1.02319 0.91097 1.00353 1.18657 0.97904 0.93509 0.88553 0.88587 0.90280 0.96028 0.87000 0.88945 0.88986 0.91785 0.92246 0.91387 0.92738 0.98801 0.91867 0.93995 0.96723 0.90683 0.89215 0.90580 0.84827 0.84299 0.83151 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.27 127.69 1.18 1.54 16 2 N -0.50 -8.30 4.76 -720.58 -3.43 -11.73 16 3 C 0.06 0.85 5.81 86.52 0.50 1.36 16 4 C -0.14 -2.72 4.82 30.74 0.15 -2.57 16 5 C -0.03 -0.73 2.79 -12.24 -0.03 -0.76 16 6 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 7 C 0.47 14.41 7.05 71.24 0.50 14.91 16 8 O -0.54 -19.98 14.99 21.96 0.33 -19.65 16 9 O -0.34 -10.89 6.99 -51.38 -0.36 -11.25 16 10 C 0.10 3.82 2.41 30.62 0.07 3.89 16 11 C -0.14 -5.71 5.72 30.67 0.18 -5.54 16 12 C 0.18 9.33 5.31 86.36 0.46 9.79 16 13 N -0.61 -31.05 3.00 -699.11 -2.09 -33.14 16 14 C -0.27 -14.60 9.59 84.03 0.81 -13.80 16 15 H 0.07 3.88 7.89 -2.91 -0.02 3.86 16 16 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 17 N -0.94 -56.27 11.19 21.65 0.24 -56.03 16 18 Si 0.97 44.77 29.59 68.60 2.03 46.80 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.14 5.91 6.52 86.36 0.56 6.48 16 23 C -0.11 -3.80 5.74 30.67 0.18 -3.63 16 24 C -0.14 -3.15 5.40 -19.71 -0.11 -3.26 16 25 C -0.11 -2.57 8.96 22.32 0.20 -2.37 16 26 C -0.14 -2.64 10.05 22.24 0.22 -2.42 16 27 C -0.10 -1.57 10.03 22.18 0.22 -1.34 16 28 C -0.13 -2.21 9.24 22.50 0.21 -2.00 16 29 C 0.11 2.17 5.12 38.30 0.20 2.37 16 30 H 0.10 0.95 8.11 -2.38 -0.02 0.93 16 31 H 0.08 1.01 7.62 -2.39 -0.02 0.99 16 32 H 0.02 0.38 6.52 -2.39 -0.02 0.36 16 33 H 0.11 1.11 8.02 -2.39 -0.02 1.10 16 34 H 0.09 1.20 8.11 -2.39 -0.02 1.18 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.50 6.00 -2.38 -0.01 1.49 16 37 H 0.06 2.42 7.16 -2.39 -0.02 2.40 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 40 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 41 H 0.06 3.57 6.04 -2.39 -0.01 3.56 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.07 2.90 7.93 -2.39 -0.02 2.88 16 45 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.13 3.33 5.38 -2.91 -0.02 3.31 16 48 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 49 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 50 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -68.77 386.94 3.56 -65.20 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.93 Total: 19.62 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 5.91 Total: 0.18 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -5.28 Total: -100.90 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.03 Total: -30.91 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.77 3.56 -65.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892862736.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.719 kcal (2) G-P(sol) polarization free energy of solvation -68.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds