Wall clock time and date at job start Wed Apr 1 2020 03:36:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.47902 * 111.00212 * 2 1
4 4 C 1.53995 * 107.05568 * 145.84444 * 3 2 1
5 5 C 1.54590 * 105.14447 * 358.77855 * 4 3 2
6 6 H 1.09000 * 110.72632 * 219.50751 * 5 4 3
7 7 C 1.50695 * 110.72664 * 96.39601 * 5 4 3
8 8 O 1.21285 * 120.00177 * 324.38217 * 7 5 4
9 9 N 1.34778 * 120.00134 * 144.37215 * 7 5 4
10 10 C 1.47416 * 125.64819 * 355.15242 * 9 7 5
11 11 C 1.54905 * 104.93023 * 204.15339 * 10 9 7
12 12 C 1.55154 * 101.57950 * 322.93400 * 11 10 9
13 13 O 1.42902 * 110.72330 * 276.96110 * 12 11 10
14 14 C 1.50705 * 110.71809 * 153.86339 * 12 11 10
15 15 H 1.08000 * 120.00529 * 241.45220 * 14 12 11
16 16 C 1.37882 * 119.99901 * 61.45636 * 14 12 11
17 17 N 1.31515 * 119.99997 * 359.97438 * 16 14 12
18 18 Si 1.86794 * 119.99984 * 179.97438 * 16 14 12
19 19 H 1.48506 * 109.46866 * 90.00276 * 18 16 14
20 20 H 1.48499 * 109.47412 * 209.99703 * 18 16 14
21 21 H 1.48499 * 109.47373 * 330.00401 * 18 16 14
22 22 C 1.47294 * 125.79386 * 175.15078 * 9 7 5
23 23 C 1.48534 * 111.00187 * 117.40013 * 2 1 3
24 24 H 1.09003 * 110.66369 * 318.71282 * 23 2 1
25 25 C 1.50702 * 110.66744 * 81.84312 * 23 2 1
26 26 C 1.38233 * 120.00014 * 28.67394 * 25 23 2
27 27 C 1.38236 * 119.99910 * 179.76709 * 26 25 23
28 28 C 1.38235 * 119.99891 * 0.51111 * 27 26 25
29 29 C 1.38231 * 119.99915 * 359.74582 * 28 27 26
30 30 C 1.38233 * 120.00234 * 359.97438 * 29 28 27
31 31 H 1.09003 * 109.46733 * 59.86921 * 1 2 3
32 32 H 1.08998 * 109.47357 * 179.87314 * 1 2 3
33 33 H 1.09003 * 109.46971 * 299.87215 * 1 2 3
34 34 H 1.08999 * 109.91484 * 26.49389 * 3 2 1
35 35 H 1.08999 * 109.91896 * 265.20196 * 3 2 1
36 36 H 1.09002 * 110.31115 * 239.85756 * 4 3 2
37 37 H 1.09003 * 110.30548 * 117.69965 * 4 3 2
38 38 H 1.09006 * 110.36664 * 85.25965 * 10 9 7
39 39 H 1.09001 * 110.36828 * 323.05051 * 10 9 7
40 40 H 1.08995 * 111.00512 * 81.01200 * 11 10 9
41 41 H 1.09007 * 111.00870 * 204.86266 * 11 10 9
42 42 H 0.96701 * 113.99562 * 298.54317 * 13 12 11
43 43 H 0.97001 * 120.00297 * 179.97438 * 17 16 14
44 44 H 1.09001 * 109.85687 * 59.49937 * 22 9 7
45 45 H 1.09008 * 110.00052 * 298.43475 * 22 9 7
46 46 H 1.08007 * 120.00195 * 0.02562 * 26 25 23
47 47 H 1.08002 * 119.99849 * 180.23421 * 27 26 25
48 48 H 1.07999 * 119.99737 * 179.72413 * 28 27 26
49 49 H 1.07996 * 120.00259 * 179.97438 * 29 28 27
50 50 H 1.08000 * 120.00385 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9991 1.3808 0.0000
4 6 3.2983 1.3658 0.8266
5 6 3.4493 -0.0930 1.3153
6 1 3.8154 -0.1201 2.3417
7 6 4.3649 -0.8688 0.4039
8 8 4.3609 -0.6501 -0.7890
9 7 5.1885 -1.8056 0.9145
10 6 5.3691 -2.1020 2.3472
11 6 6.7767 -2.7408 2.4482
12 6 6.8323 -3.5799 1.1443
13 8 6.1842 -4.8405 1.3262
14 6 8.2579 -3.7751 0.6963
15 1 8.5804 -3.3927 -0.2608
16 6 9.1505 -4.4421 1.5084
17 7 8.7580 -4.9075 2.6741
18 14 10.9173 -4.6848 0.9528
19 1 11.7418 -3.5371 1.4094
20 1 11.4517 -5.9413 1.5365
21 1 10.9632 -4.7686 -0.5291
22 6 6.0584 -2.7042 0.1365
23 6 2.0014 -0.6381 1.2311
24 1 1.4238 -0.3323 2.1035
25 6 2.0052 -2.1388 1.0933
26 6 2.1365 -2.7179 -0.1550
27 6 2.1449 -4.0945 -0.2809
28 6 2.0113 -4.8919 0.8404
29 6 1.8747 -4.3128 2.0880
30 6 1.8722 -2.9362 2.2146
31 1 -0.3633 0.5159 -0.8889
32 1 -0.3634 -1.0276 -0.0023
33 1 -0.3633 0.5119 0.8912
34 1 1.2759 2.0561 0.4572
35 1 2.2122 1.6967 -1.0212
36 1 3.2138 2.0428 1.6767
37 1 4.1470 1.6454 0.2023
38 1 4.6084 -2.8045 2.6881
39 1 5.3263 -1.1838 2.9330
40 1 7.5533 -1.9760 2.4541
41 1 6.8535 -3.3801 3.3278
42 1 6.5896 -5.3966 2.0056
43 1 9.3858 -5.3770 3.2453
44 1 6.7582 -2.1180 -0.4592
45 1 5.4546 -3.3352 -0.5158
46 1 2.2367 -2.0949 -1.0316
47 1 2.2513 -4.5470 -1.2558
48 1 2.0134 -5.9674 0.7415
49 1 1.7700 -4.9357 2.9640
50 1 1.7650 -2.4837 3.1893
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000898086276.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:36:30
Heat of formation + Delta-G solvation = -39.616063 kcal
Electronic energy + Delta-G solvation = -32661.239518 eV
Core-core repulsion = 28653.412246 eV
Total energy + Delta-G solvation = -4007.827272 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.57225 -38.63267 -37.98178 -36.76095 -34.18871 -32.35413 -32.17242 -31.79307
-30.52488 -29.59723 -28.39644 -27.67030 -25.89927 -24.97990 -23.04294 -22.29285
-22.15782 -21.20249 -20.26451 -19.50222 -18.33733 -17.34135 -16.86490 -16.56179
-15.79341 -15.36052 -15.07089 -14.90722 -14.78085 -14.46199 -14.28418 -14.17316
-13.82095 -13.62679 -13.01719 -12.93400 -12.90743 -12.68201 -12.48788 -12.11996
-12.07947 -11.91547 -11.72254 -11.54430 -11.41231 -11.35107 -11.25444 -11.11862
-10.95368 -10.82134 -10.72329 -10.57429 -10.55744 -10.46319 -10.05523 -9.34737
-9.08087 -8.63768 -8.52930 -8.44739 -8.37112 -8.15549 -7.82171 -6.25776
-4.32809 1.64918 1.79278 3.18354 3.21044 3.28595 3.33321 3.64355
3.87908 4.11193 4.29282 4.55725 4.70771 4.86938 5.01899 5.04176
5.06586 5.20396 5.26874 5.31452 5.33717 5.38739 5.47496 5.53850
5.61131 5.65437 5.69693 5.79946 5.83176 5.86769 5.88207 5.98621
6.01980 6.11255 6.17244 6.28055 6.32701 6.41200 6.55219 6.69826
6.77088 6.79377 6.90084 6.98096 6.99368 7.07022 7.10437 7.34991
7.36330 7.40411 7.76285 8.07790 8.29080 8.69374 8.84931 9.34636
9.44274 10.81494
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.015404 B = 0.003931 C = 0.003477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.289433 B = 7120.285224 C = 8049.883137
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.504 5.504
3 C 0.046 3.954
4 C -0.114 4.114
5 C -0.107 4.107
6 H 0.095 0.905
7 C 0.542 3.458
8 O -0.540 6.540
9 N -0.603 5.603
10 C 0.097 3.903
11 C -0.134 4.134
12 C 0.250 3.750
13 O -0.581 6.581
14 C -0.534 4.534
15 H 0.062 0.938
16 C 0.073 3.927
17 N -0.896 5.896
18 Si 0.900 3.100
19 H -0.279 1.279
20 H -0.285 1.285
21 H -0.272 1.272
22 C 0.129 3.871
23 C 0.124 3.876
24 H 0.066 0.934
25 C -0.085 4.085
26 C -0.077 4.077
27 C -0.121 4.121
28 C -0.107 4.107
29 C -0.121 4.121
30 C -0.114 4.114
31 H 0.068 0.932
32 H 0.069 0.931
33 H 0.025 0.975
34 H 0.042 0.958
35 H 0.083 0.917
36 H 0.072 0.928
37 H 0.082 0.918
38 H 0.062 0.938
39 H 0.053 0.947
40 H 0.064 0.936
41 H 0.085 0.915
42 H 0.380 0.620
43 H 0.267 0.733
44 H 0.067 0.933
45 H 0.057 0.943
46 H 0.133 0.867
47 H 0.115 0.885
48 H 0.116 0.884
49 H 0.116 0.884
50 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.149 7.815 2.353 17.208
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 N -0.228 5.228
3 C -0.082 4.082
4 C -0.153 4.153
5 C -0.129 4.129
6 H 0.113 0.887
7 C 0.329 3.671
8 O -0.418 6.418
9 N -0.335 5.335
10 C -0.026 4.026
11 C -0.172 4.172
12 C 0.210 3.790
13 O -0.390 6.390
14 C -0.572 4.572
15 H 0.081 0.919
16 C -0.129 4.129
17 N -0.536 5.536
18 Si 0.728 3.272
19 H -0.205 1.205
20 H -0.211 1.211
21 H -0.197 1.197
22 C 0.007 3.993
23 C 0.016 3.984
24 H 0.084 0.916
25 C -0.085 4.085
26 C -0.095 4.095
27 C -0.139 4.139
28 C -0.125 4.125
29 C -0.139 4.139
30 C -0.132 4.132
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.043 0.957
34 H 0.060 0.940
35 H 0.101 0.899
36 H 0.090 0.910
37 H 0.101 0.899
38 H 0.080 0.920
39 H 0.072 0.928
40 H 0.082 0.918
41 H 0.104 0.896
42 H 0.229 0.771
43 H 0.077 0.923
44 H 0.085 0.915
45 H 0.076 0.924
46 H 0.151 0.849
47 H 0.133 0.867
48 H 0.134 0.866
49 H 0.135 0.865
50 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -15.374 7.855 0.877 17.287
hybrid contribution 1.205 -0.012 1.187 1.691
sum -14.169 7.843 2.064 16.326
Atomic orbital electron populations
1.22508 0.87895 1.02276 1.00370 1.64614 1.07630 1.14763 1.35788
1.22773 0.95067 0.89226 1.01145 1.22329 0.99047 0.94247 0.99628
1.22283 0.94762 0.95654 1.00160 0.88703 1.19484 0.79704 0.79519
0.88358 1.90640 1.68373 1.67033 1.15723 1.48577 1.41263 1.35284
1.08416 1.22467 1.00085 0.98616 0.81407 1.23275 0.92029 0.99748
1.02179 1.19396 0.89426 0.81226 0.88970 1.86155 1.59213 1.30554
1.63038 1.21546 0.94148 1.37038 1.04457 0.91933 1.24961 0.99126
0.94351 0.94468 1.69700 1.35957 1.37917 1.09977 0.86455 0.83966
0.77625 0.79162 1.20543 1.21060 1.19712 1.21997 0.91936 0.90757
0.94603 1.21453 0.93127 0.91769 0.92067 0.91586 1.19417 1.02076
0.93166 0.93862 1.21121 0.96239 0.94416 0.97710 1.21137 1.00223
0.93974 0.98547 1.21077 0.99046 0.99548 0.92829 1.20938 1.01101
0.94526 0.97298 1.20831 1.01149 0.93832 0.97428 0.91310 0.91219
0.95693 0.93987 0.89867 0.90963 0.89892 0.91983 0.92849 0.91754
0.89614 0.77069 0.92328 0.91493 0.92449 0.84900 0.86654 0.86620
0.86548 0.86896
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.19 9.29 60.07 0.56 0.75 16
2 N -0.50 -6.52 4.12 -232.20 -0.96 -7.47 16
3 C 0.05 0.53 6.70 -2.75 -0.02 0.51 16
4 C -0.11 -1.38 6.18 -25.38 -0.16 -1.54 16
5 C -0.11 -1.51 2.99 -89.91 -0.27 -1.78 16
6 H 0.09 1.22 6.36 -51.93 -0.33 0.89 16
7 C 0.54 10.01 4.55 -10.99 -0.05 9.96 16
8 O -0.54 -11.51 16.06 5.55 0.09 -11.42 16
9 N -0.60 -11.86 3.34 -170.31 -0.57 -12.43 16
10 C 0.10 1.78 6.51 -2.54 -0.02 1.76 16
11 C -0.13 -2.88 5.47 -24.59 -0.13 -3.02 16
12 C 0.25 6.00 0.85 -89.94 -0.08 5.92 16
13 O -0.58 -14.46 13.08 -35.23 -0.46 -14.93 16
14 C -0.53 -14.01 8.21 -34.44 -0.28 -14.29 16
15 H 0.06 1.67 7.57 -52.49 -0.40 1.27 16
16 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16
17 N -0.90 -22.90 10.67 55.43 0.59 -22.31 16
18 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16
19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
22 C 0.13 2.94 6.25 -2.92 -0.02 2.92 16
23 C 0.12 1.64 2.34 -66.93 -0.16 1.48 16
24 H 0.07 0.75 7.93 -51.93 -0.41 0.34 16
25 C -0.08 -1.24 4.17 -104.62 -0.44 -1.68 16
26 C -0.08 -1.26 7.93 -39.58 -0.31 -1.57 16
27 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16
28 C -0.11 -1.60 10.05 -39.58 -0.40 -1.99 16
29 C -0.12 -1.69 10.05 -39.59 -0.40 -2.09 16
30 C -0.11 -1.57 9.19 -39.58 -0.36 -1.93 16
31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16
33 H 0.02 0.23 8.00 -51.93 -0.42 -0.19 16
34 H 0.04 0.40 7.73 -51.93 -0.40 0.00 16
35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.08 1.13 7.61 -51.93 -0.40 0.73 16
38 H 0.06 1.14 7.61 -51.93 -0.40 0.74 16
39 H 0.05 0.83 6.89 -51.93 -0.36 0.48 16
40 H 0.06 1.44 8.04 -51.93 -0.42 1.02 16
41 H 0.09 1.93 7.54 -51.92 -0.39 1.54 16
42 H 0.38 9.50 7.46 45.56 0.34 9.84 16
43 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16
44 H 0.07 1.58 7.66 -51.93 -0.40 1.19 16
45 H 0.06 1.38 8.07 -51.92 -0.42 0.97 16
46 H 0.13 2.41 6.91 -52.48 -0.36 2.05 16
47 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16
48 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16
49 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16
50 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16
LS Contribution 392.56 15.07 5.92 5.92
Total: -1.00 -28.69 392.56 -10.70 -39.39
By element:
Atomic # 1 Polarization: 22.32 SS G_CDS: -7.26 Total: 15.06 kcal
Atomic # 6 Polarization: -4.11 SS G_CDS: -3.02 Total: -7.13 kcal
Atomic # 7 Polarization: -41.28 SS G_CDS: -0.93 Total: -42.22 kcal
Atomic # 8 Polarization: -25.97 SS G_CDS: -0.37 Total: -26.34 kcal
Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -28.69 -10.70 -39.39 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000898086276.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.226 kcal
(2) G-P(sol) polarization free energy of solvation -28.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.920 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds