Wall clock time and date at job start Wed Apr 1 2020 03:36:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.47902 * 111.00212 * 2 1
4 4 C 1.53995 * 107.05568 * 145.84444 * 3 2 1
5 5 C 1.54590 * 105.14447 * 358.77855 * 4 3 2
6 6 H 1.09000 * 110.72632 * 219.50751 * 5 4 3
7 7 C 1.50695 * 110.72664 * 96.39601 * 5 4 3
8 8 O 1.21285 * 120.00177 * 324.38217 * 7 5 4
9 9 N 1.34778 * 120.00134 * 144.37215 * 7 5 4
10 10 C 1.47416 * 125.64819 * 355.15242 * 9 7 5
11 11 C 1.54905 * 104.93023 * 204.15339 * 10 9 7
12 12 C 1.55154 * 101.57950 * 322.93400 * 11 10 9
13 13 O 1.42902 * 110.72330 * 276.96110 * 12 11 10
14 14 C 1.50705 * 110.71809 * 153.86339 * 12 11 10
15 15 H 1.08000 * 120.00529 * 241.45220 * 14 12 11
16 16 C 1.37882 * 119.99901 * 61.45636 * 14 12 11
17 17 N 1.31515 * 119.99997 * 359.97438 * 16 14 12
18 18 Si 1.86794 * 119.99984 * 179.97438 * 16 14 12
19 19 H 1.48506 * 109.46866 * 90.00276 * 18 16 14
20 20 H 1.48499 * 109.47412 * 209.99703 * 18 16 14
21 21 H 1.48499 * 109.47373 * 330.00401 * 18 16 14
22 22 C 1.47294 * 125.79386 * 175.15078 * 9 7 5
23 23 C 1.48534 * 111.00187 * 117.40013 * 2 1 3
24 24 H 1.09003 * 110.66369 * 318.71282 * 23 2 1
25 25 C 1.50702 * 110.66744 * 81.84312 * 23 2 1
26 26 C 1.38233 * 120.00014 * 28.67394 * 25 23 2
27 27 C 1.38236 * 119.99910 * 179.76709 * 26 25 23
28 28 C 1.38235 * 119.99891 * 0.51111 * 27 26 25
29 29 C 1.38231 * 119.99915 * 359.74582 * 28 27 26
30 30 C 1.38233 * 120.00234 * 359.97438 * 29 28 27
31 31 H 1.09003 * 109.46733 * 59.86921 * 1 2 3
32 32 H 1.08998 * 109.47357 * 179.87314 * 1 2 3
33 33 H 1.09003 * 109.46971 * 299.87215 * 1 2 3
34 34 H 1.08999 * 109.91484 * 26.49389 * 3 2 1
35 35 H 1.08999 * 109.91896 * 265.20196 * 3 2 1
36 36 H 1.09002 * 110.31115 * 239.85756 * 4 3 2
37 37 H 1.09003 * 110.30548 * 117.69965 * 4 3 2
38 38 H 1.09006 * 110.36664 * 85.25965 * 10 9 7
39 39 H 1.09001 * 110.36828 * 323.05051 * 10 9 7
40 40 H 1.08995 * 111.00512 * 81.01200 * 11 10 9
41 41 H 1.09007 * 111.00870 * 204.86266 * 11 10 9
42 42 H 0.96701 * 113.99562 * 298.54317 * 13 12 11
43 43 H 0.97001 * 120.00297 * 179.97438 * 17 16 14
44 44 H 1.09001 * 109.85687 * 59.49937 * 22 9 7
45 45 H 1.09008 * 110.00052 * 298.43475 * 22 9 7
46 46 H 1.08007 * 120.00195 * 0.02562 * 26 25 23
47 47 H 1.08002 * 119.99849 * 180.23421 * 27 26 25
48 48 H 1.07999 * 119.99737 * 179.72413 * 28 27 26
49 49 H 1.07996 * 120.00259 * 179.97438 * 29 28 27
50 50 H 1.08000 * 120.00385 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9991 1.3808 0.0000
4 6 3.2983 1.3658 0.8266
5 6 3.4493 -0.0930 1.3153
6 1 3.8154 -0.1201 2.3417
7 6 4.3649 -0.8688 0.4039
8 8 4.3609 -0.6501 -0.7890
9 7 5.1885 -1.8056 0.9145
10 6 5.3691 -2.1020 2.3472
11 6 6.7767 -2.7408 2.4482
12 6 6.8323 -3.5799 1.1443
13 8 6.1842 -4.8405 1.3262
14 6 8.2579 -3.7751 0.6963
15 1 8.5804 -3.3927 -0.2608
16 6 9.1505 -4.4421 1.5084
17 7 8.7580 -4.9075 2.6741
18 14 10.9173 -4.6848 0.9528
19 1 11.7418 -3.5371 1.4094
20 1 11.4517 -5.9413 1.5365
21 1 10.9632 -4.7686 -0.5291
22 6 6.0584 -2.7042 0.1365
23 6 2.0014 -0.6381 1.2311
24 1 1.4238 -0.3323 2.1035
25 6 2.0052 -2.1388 1.0933
26 6 2.1365 -2.7179 -0.1550
27 6 2.1449 -4.0945 -0.2809
28 6 2.0113 -4.8919 0.8404
29 6 1.8747 -4.3128 2.0880
30 6 1.8722 -2.9362 2.2146
31 1 -0.3633 0.5159 -0.8889
32 1 -0.3634 -1.0276 -0.0023
33 1 -0.3633 0.5119 0.8912
34 1 1.2759 2.0561 0.4572
35 1 2.2122 1.6967 -1.0212
36 1 3.2138 2.0428 1.6767
37 1 4.1470 1.6454 0.2023
38 1 4.6084 -2.8045 2.6881
39 1 5.3263 -1.1838 2.9330
40 1 7.5533 -1.9760 2.4541
41 1 6.8535 -3.3801 3.3278
42 1 6.5896 -5.3966 2.0056
43 1 9.3858 -5.3770 3.2453
44 1 6.7582 -2.1180 -0.4592
45 1 5.4546 -3.3352 -0.5158
46 1 2.2367 -2.0949 -1.0316
47 1 2.2513 -4.5470 -1.2558
48 1 2.0134 -5.9674 0.7415
49 1 1.7700 -4.9357 2.9640
50 1 1.7650 -2.4837 3.1893
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000898086276.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:36:29
Heat of formation + Delta-G solvation = -57.579491 kcal
Electronic energy + Delta-G solvation = -32662.018471 eV
Core-core repulsion = 28653.412246 eV
Total energy + Delta-G solvation = -4008.606225 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.78999 -40.08103 -39.21636 -38.25693 -35.97594 -34.17957 -33.40587 -32.83507
-31.66955 -31.26770 -30.06849 -28.84108 -27.22111 -26.40672 -24.40156 -23.60731
-23.30181 -22.43481 -21.38070 -21.20568 -19.74951 -19.13420 -18.32901 -17.70375
-17.10293 -16.89557 -16.61759 -16.34801 -16.07648 -15.79395 -15.67089 -15.39943
-15.24192 -14.74360 -14.61351 -14.16840 -14.09970 -13.86164 -13.80145 -13.57059
-13.48994 -13.24391 -13.16823 -13.05680 -12.95979 -12.75216 -12.63960 -12.42148
-12.40211 -12.27823 -12.07055 -11.95504 -11.89220 -11.83460 -11.68446 -11.22597
-10.69235 -10.51052 -10.09117 -9.69216 -9.51441 -9.44415 -9.28279 -8.23258
-6.37216 0.51941 0.63704 1.39910 1.43317 1.52086 1.77154 2.14167
2.40591 2.90382 3.02071 3.04537 3.52498 3.61590 3.73003 3.93291
4.04043 4.05008 4.09759 4.19483 4.24586 4.30290 4.34462 4.38040
4.39264 4.49635 4.52245 4.60358 4.65126 4.70736 4.73504 4.74773
4.85284 4.89050 4.96553 4.97313 5.03695 5.17291 5.22386 5.24007
5.27762 5.36311 5.50712 5.55414 5.65095 5.67829 5.75230 5.78482
6.02895 6.12358 6.17936 6.23655 6.63949 6.79574 7.32947 7.36430
7.45215 8.82304
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.015404 B = 0.003931 C = 0.003477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1817.289433 B = 7120.285224 C = 8049.883137
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 N -0.533 5.533
3 C 0.047 3.953
4 C -0.110 4.110
5 C -0.104 4.104
6 H 0.119 0.881
7 C 0.539 3.461
8 O -0.576 6.576
9 N -0.605 5.605
10 C 0.108 3.892
11 C -0.123 4.123
12 C 0.242 3.758
13 O -0.587 6.587
14 C -0.565 4.565
15 H 0.045 0.955
16 C 0.042 3.958
17 N -0.902 5.902
18 Si 0.954 3.046
19 H -0.273 1.273
20 H -0.277 1.277
21 H -0.280 1.280
22 C 0.139 3.861
23 C 0.129 3.871
24 H 0.100 0.900
25 C -0.087 4.087
26 C -0.092 4.092
27 C -0.143 4.143
28 C -0.121 4.121
29 C -0.124 4.124
30 C -0.112 4.112
31 H 0.073 0.927
32 H 0.058 0.942
33 H 0.046 0.954
34 H 0.072 0.928
35 H 0.066 0.934
36 H 0.110 0.890
37 H 0.060 0.940
38 H 0.068 0.932
39 H 0.093 0.907
40 H 0.052 0.948
41 H 0.078 0.922
42 H 0.377 0.623
43 H 0.271 0.729
44 H 0.047 0.953
45 H 0.032 0.968
46 H 0.105 0.895
47 H 0.110 0.890
48 H 0.126 0.874
49 H 0.140 0.860
50 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.248 9.273 5.352 19.458
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 N -0.257 5.257
3 C -0.080 4.080
4 C -0.149 4.149
5 C -0.126 4.126
6 H 0.137 0.863
7 C 0.329 3.671
8 O -0.455 6.455
9 N -0.338 5.338
10 C -0.014 4.014
11 C -0.162 4.162
12 C 0.202 3.798
13 O -0.395 6.395
14 C -0.603 4.603
15 H 0.063 0.937
16 C -0.160 4.160
17 N -0.541 5.541
18 Si 0.780 3.220
19 H -0.199 1.199
20 H -0.202 1.202
21 H -0.205 1.205
22 C 0.016 3.984
23 C 0.020 3.980
24 H 0.117 0.883
25 C -0.087 4.087
26 C -0.111 4.111
27 C -0.162 4.162
28 C -0.139 4.139
29 C -0.142 4.142
30 C -0.131 4.131
31 H 0.092 0.908
32 H 0.077 0.923
33 H 0.065 0.935
34 H 0.090 0.910
35 H 0.084 0.916
36 H 0.129 0.871
37 H 0.079 0.921
38 H 0.086 0.914
39 H 0.111 0.889
40 H 0.071 0.929
41 H 0.096 0.904
42 H 0.226 0.774
43 H 0.081 0.919
44 H 0.065 0.935
45 H 0.050 0.950
46 H 0.124 0.876
47 H 0.128 0.872
48 H 0.144 0.856
49 H 0.158 0.842
50 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -16.492 9.326 3.892 19.342
hybrid contribution 1.544 -0.507 0.165 1.634
sum -14.947 8.819 4.057 17.823
Atomic orbital electron populations
1.22485 0.86482 1.01993 1.01646 1.64533 1.09173 1.15695 1.36340
1.22762 0.95575 0.89141 1.00547 1.22383 0.98400 0.93420 1.00672
1.22374 0.94176 0.96077 0.99964 0.86331 1.20409 0.79267 0.78780
0.88653 1.90624 1.69180 1.67930 1.17810 1.48629 1.41312 1.35223
1.08629 1.22441 0.97787 1.00357 0.80803 1.23041 0.93998 0.98949
1.00195 1.19461 0.88512 0.81240 0.90549 1.86148 1.59199 1.31130
1.63060 1.21737 0.95877 1.38405 1.04315 0.93700 1.25504 1.02019
0.93880 0.94562 1.69744 1.36856 1.37411 1.10094 0.85626 0.80264
0.77894 0.78218 1.19883 1.20183 1.20541 1.21627 0.91625 0.90748
0.94402 1.21520 0.92617 0.90490 0.93360 0.88286 1.19647 1.01294
0.94537 0.93265 1.20963 0.97954 0.94211 0.97953 1.21255 1.01437
0.94386 0.99075 1.21292 0.99351 1.00141 0.93113 1.21301 1.00048
0.95341 0.97495 1.21198 0.99829 0.93620 0.98421 0.90812 0.92296
0.93539 0.90980 0.91589 0.87135 0.92130 0.91398 0.88854 0.92882
0.90354 0.77381 0.91918 0.93485 0.94998 0.87642 0.87228 0.85627
0.84173 0.83578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.41 9.29 127.69 1.19 1.60 16
2 N -0.53 -12.81 4.12 -888.55 -3.66 -16.47 16
3 C 0.05 0.98 6.70 86.45 0.58 1.56 16
4 C -0.11 -2.34 6.18 31.47 0.19 -2.15 16
5 C -0.10 -2.64 2.99 -10.34 -0.03 -2.67 16
6 H 0.12 2.44 6.36 -2.39 -0.02 2.42 16
7 C 0.54 19.66 4.55 87.66 0.40 20.06 16
8 O -0.58 -25.34 16.06 -3.05 -0.05 -25.38 16
9 N -0.61 -23.68 3.34 -811.12 -2.71 -26.38 16
10 C 0.11 3.72 6.51 86.86 0.57 4.29 16
11 C -0.12 -5.24 5.47 31.98 0.17 -5.07 16
12 C 0.24 11.88 0.85 -10.35 -0.01 11.88 16
13 O -0.59 -29.78 13.08 -148.98 -1.95 -31.73 16
14 C -0.57 -30.50 8.21 25.60 0.21 -30.29 16
15 H 0.04 2.50 7.57 -2.91 -0.02 2.48 16
16 C 0.04 2.17 5.28 84.66 0.45 2.61 16
17 N -0.90 -45.76 10.67 21.45 0.23 -45.53 16
18 Si 0.95 41.78 29.54 68.60 2.03 43.80 16
19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16
21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
22 C 0.14 6.63 6.25 86.67 0.54 7.17 16
23 C 0.13 2.97 2.34 44.52 0.10 3.08 16
24 H 0.10 1.70 7.93 -2.39 -0.02 1.68 16
25 C -0.09 -2.40 4.17 -19.87 -0.08 -2.48 16
26 C -0.09 -3.10 7.93 22.27 0.18 -2.93 16
27 C -0.14 -4.78 10.05 22.27 0.22 -4.55 16
28 C -0.12 -3.60 10.05 22.27 0.22 -3.37 16
29 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16
30 C -0.11 -2.74 9.19 22.27 0.20 -2.54 16
31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
32 H 0.06 1.20 8.01 -2.39 -0.02 1.19 16
33 H 0.05 0.66 8.00 -2.39 -0.02 0.64 16
34 H 0.07 1.06 7.73 -2.39 -0.02 1.04 16
35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16
37 H 0.06 1.57 7.61 -2.39 -0.02 1.55 16
38 H 0.07 2.29 7.61 -2.38 -0.02 2.27 16
39 H 0.09 2.51 6.89 -2.39 -0.02 2.49 16
40 H 0.05 2.35 8.04 -2.39 -0.02 2.33 16
41 H 0.08 3.44 7.54 -2.38 -0.02 3.43 16
42 H 0.38 19.09 7.46 -74.06 -0.55 18.54 16
43 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16
44 H 0.05 2.37 7.66 -2.39 -0.02 2.35 16
45 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16
46 H 0.11 4.08 6.91 -2.91 -0.02 4.06 16
47 H 0.11 3.56 8.06 -2.91 -0.02 3.54 16
48 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16
49 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16
50 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16
Total: -1.00 -64.88 392.56 -0.39 -65.27
By element:
Atomic # 1 Polarization: 42.86 SS G_CDS: 0.39 Total: 43.24 kcal
Atomic # 6 Polarization: -12.15 SS G_CDS: 5.33 Total: -6.82 kcal
Atomic # 7 Polarization: -82.25 SS G_CDS: -6.14 Total: -88.38 kcal
Atomic # 8 Polarization: -55.12 SS G_CDS: -2.00 Total: -57.12 kcal
Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal
Total: -64.88 -0.39 -65.27 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000898086276.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.690 kcal
(2) G-P(sol) polarization free energy of solvation -64.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.579 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds