Wall clock time and date at job start Wed Apr 1 2020 03:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00139 * 2 1 4 4 O 1.21592 * 119.99941 * 176.56991 * 3 2 1 5 5 C 1.47533 * 120.00070 * 356.84107 * 3 2 1 6 6 C 1.39527 * 120.05005 * 332.47430 * 5 3 2 7 7 C 1.37789 * 120.18740 * 179.81299 * 6 5 3 8 8 C 1.38644 * 119.96966 * 0.40358 * 7 6 5 9 9 C 1.37658 * 120.32443 * 359.67474 * 8 7 6 10 10 C 1.38879 * 120.87494 * 0.30229 * 9 8 7 11 11 O 1.35852 * 111.32187 * 179.30275 * 10 9 8 12 12 C 1.43771 * 109.29194 * 18.84077 * 11 10 9 13 13 C 1.51670 * 132.13984 * 180.54487 * 9 8 7 14 14 C 1.46502 * 120.00018 * 180.02562 * 2 1 3 15 15 C 1.52999 * 109.47325 * 59.99584 * 14 2 1 16 16 C 1.53000 * 109.47087 * 180.02562 * 15 14 2 17 17 C 1.52999 * 109.47208 * 60.00075 * 16 15 14 18 18 N 1.46502 * 109.46823 * 179.97438 * 17 16 15 19 19 C 1.36931 * 120.00185 * 274.99717 * 18 17 16 20 20 H 1.08001 * 120.00211 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00276 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00016 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00145 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47161 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47164 * 120.00405 * 23 21 19 26 26 H 1.48498 * 109.47079 * 240.00057 * 23 21 19 27 27 C 1.52999 * 109.47035 * 299.99957 * 17 16 15 28 28 C 1.52999 * 109.46823 * 299.99748 * 14 2 1 29 29 H 1.08998 * 109.47215 * 96.04050 * 1 2 3 30 30 H 1.09002 * 109.47161 * 216.04325 * 1 2 3 31 31 H 1.09001 * 109.47179 * 336.04402 * 1 2 3 32 32 H 1.07996 * 119.91103 * 0.09078 * 6 5 3 33 33 H 1.07994 * 120.01454 * 180.13188 * 7 6 5 34 34 H 1.08002 * 119.84165 * 179.69423 * 8 7 6 35 35 H 1.09003 * 110.75138 * 90.66826 * 12 11 10 36 36 H 1.08997 * 110.75615 * 213.84504 * 12 11 10 37 37 H 1.09004 * 110.94469 * 46.13485 * 13 9 8 38 38 H 1.09000 * 110.98171 * 282.44740 * 13 9 8 39 39 H 1.09001 * 109.47146 * 180.02562 * 14 2 1 40 40 H 1.08997 * 109.47069 * 300.00662 * 15 14 2 41 41 H 1.09004 * 109.47021 * 60.00243 * 15 14 2 42 42 H 1.09006 * 109.46920 * 299.99865 * 16 15 14 43 43 H 1.09001 * 109.47086 * 180.02562 * 16 15 14 44 44 H 1.09001 * 109.46934 * 60.00213 * 17 16 15 45 45 H 0.96999 * 119.99940 * 95.00534 * 18 17 16 46 46 H 0.96997 * 119.99706 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.47468 * 299.99929 * 27 17 16 48 48 H 1.09004 * 109.47021 * 180.02562 * 27 17 16 49 49 H 1.09004 * 109.47504 * 299.99716 * 28 14 2 50 50 H 1.08999 * 109.47668 * 60.00251 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3531 1.1681 0.0630 5 6 1.4029 2.4439 -0.0704 6 6 0.1542 2.4973 -0.6906 7 6 -0.5373 3.6874 -0.7545 8 6 0.0117 4.8376 -0.2089 9 6 1.2437 4.7967 0.4038 10 6 1.9615 3.6103 0.4824 11 8 3.1521 3.7940 1.1104 12 6 3.1058 5.0146 1.8686 13 6 2.0770 5.8647 1.0860 14 6 2.1975 -1.2687 -0.0006 15 6 1.8278 -2.0706 -1.2501 16 6 2.5923 -3.3958 -1.2503 17 6 2.2222 -4.1984 -0.0014 18 7 2.9539 -5.4676 -0.0020 19 6 2.4542 -6.5456 -0.6825 20 1 1.5209 -6.4602 -1.2192 21 6 3.1471 -7.7484 -0.6827 22 7 4.2843 -7.8528 -0.0282 23 14 2.4658 -9.2188 -1.6117 24 1 1.1836 -8.8438 -2.2603 25 1 3.4394 -9.6431 -2.6496 26 1 2.2329 -10.3383 -0.6643 27 6 2.5919 -3.3966 1.2481 28 6 1.8278 -2.0715 1.2484 29 1 -0.3633 -0.1081 -1.0219 30 1 -0.3633 -0.8309 0.6047 31 1 -0.3633 0.9391 0.4173 32 1 -0.2736 1.6024 -1.1177 33 1 -1.5046 3.7251 -1.2333 34 1 -0.5299 5.7704 -0.2646 35 1 2.7578 4.8255 2.8842 36 1 4.0821 5.4992 1.8805 37 1 1.4668 6.4604 1.7649 38 1 2.5737 6.4999 0.3526 39 1 3.2691 -1.0696 0.0000 40 1 0.7562 -2.2696 -1.2502 41 1 2.0911 -1.4986 -2.1399 42 1 3.6641 -3.1970 -1.2501 43 1 2.3293 -3.9669 -2.1407 44 1 1.1505 -4.3972 -0.0017 45 1 3.7922 -5.5444 0.4798 46 1 4.7683 -8.6934 -0.0280 47 1 3.6636 -3.1977 1.2485 48 1 2.3286 -3.9685 2.1379 49 1 2.0912 -1.5003 2.1386 50 1 0.7562 -2.2707 1.2484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963943798.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:35 Heat of formation + Delta-G solvation = -15.210859 kcal Electronic energy + Delta-G solvation = -30248.181224 eV Core-core repulsion = 26241.412242 eV Total energy + Delta-G solvation = -4006.768983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64014 -40.11828 -38.10183 -37.48212 -35.44568 -33.67752 -32.88034 -31.05334 -30.42722 -30.36824 -29.64786 -27.67228 -26.97922 -24.44884 -23.68550 -22.99255 -22.31152 -22.18928 -21.04174 -19.50843 -19.27710 -17.80912 -17.22582 -17.00530 -16.86133 -16.55258 -16.08027 -15.53964 -15.24419 -15.04722 -14.33292 -14.07779 -13.88970 -13.76187 -13.62320 -13.53237 -13.44765 -13.07442 -12.95615 -12.80923 -12.51945 -12.44115 -12.22075 -12.06530 -11.92221 -11.74419 -11.49123 -11.36450 -11.11971 -10.87785 -10.69362 -10.66595 -10.61707 -10.13297 -10.08107 -9.81681 -9.67081 -9.52150 -9.22931 -8.84793 -8.64413 -8.45586 -6.90649 -5.72497 -3.00879 0.56148 0.91846 2.67867 2.85503 2.93886 3.43888 3.45282 3.50539 3.53049 3.95211 4.11126 4.29278 4.49651 4.56765 4.62029 4.71724 4.81318 4.89778 5.00014 5.03954 5.06043 5.08355 5.24695 5.27901 5.30259 5.35316 5.47623 5.48708 5.56836 5.63829 5.69338 5.78675 5.82462 5.86270 5.90437 5.94139 5.98654 6.10336 6.16822 6.31233 6.33886 6.37897 6.48443 6.63055 6.70451 6.75395 6.78639 7.02866 7.17992 7.36230 7.73890 8.17882 8.46381 9.57207 10.16568 10.51072 11.50368 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.002073 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.791046 B =13506.737614 C =14105.110657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.605 5.605 3 C 0.557 3.443 4 O -0.525 6.525 5 C -0.154 4.154 6 C -0.067 4.067 7 C -0.160 4.160 8 C -0.047 4.047 9 C -0.189 4.189 10 C 0.166 3.834 11 O -0.280 6.280 12 C 0.045 3.955 13 C -0.108 4.108 14 C 0.141 3.859 15 C -0.121 4.121 16 C -0.132 4.132 17 C 0.178 3.822 18 N -0.726 5.726 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 30.874 2.424 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.337 5.337 3 C 0.345 3.655 4 O -0.401 6.401 5 C -0.158 4.158 6 C -0.085 4.085 7 C -0.178 4.178 8 C -0.065 4.065 9 C -0.190 4.190 10 C 0.119 3.881 11 O -0.192 6.192 12 C -0.030 4.030 13 C -0.145 4.145 14 C 0.039 3.961 15 C -0.160 4.160 16 C -0.173 4.173 17 C 0.068 3.932 18 N -0.366 5.366 19 C -0.366 4.366 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.160 4.160 28 C -0.158 4.158 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.046 30.585 2.388 32.606 hybrid contribution -0.204 -0.686 -0.402 0.821 sum -11.251 29.899 1.986 32.007 Atomic orbital electron populations 1.22358 0.80412 1.03723 1.01694 1.47827 1.06745 1.05925 1.73246 1.18140 0.87175 0.83283 0.76874 1.90822 1.13285 1.86915 1.49128 1.19216 0.96536 0.91715 1.08308 1.21790 0.91822 0.99492 0.95371 1.20999 1.01343 0.92149 1.03300 1.20476 0.92883 0.98818 0.94351 1.20788 0.97518 0.94347 1.06383 1.19468 0.84765 0.92627 0.91284 1.87011 1.29460 1.42385 1.60296 1.23952 1.01174 0.82729 0.95163 1.21807 0.96326 0.97042 0.99336 1.21259 0.97980 0.81232 0.95656 1.21861 1.00743 0.97012 0.96371 1.22233 0.99688 0.93816 1.01583 1.20222 0.95682 0.86193 0.91061 1.42451 1.26068 1.06587 1.61497 1.19281 1.04050 0.89451 1.23836 0.91189 1.24750 0.97344 0.97996 1.01111 1.69678 1.16198 1.25590 1.46694 0.86141 0.77931 0.83157 0.79118 1.20605 1.21945 1.21949 1.21758 1.00118 0.94411 0.99712 1.21794 1.00682 0.96448 0.96837 0.92055 0.90672 0.89893 0.82964 0.84749 0.85410 0.90277 0.87236 0.88851 0.88947 0.88071 0.92102 0.92574 0.92446 0.91696 0.93650 0.78288 0.93619 0.92004 0.91520 0.92203 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 7.81 59.84 0.47 0.99 16 2 N -0.61 -7.73 2.76 -175.17 -0.48 -8.21 16 3 C 0.56 8.34 7.47 -12.47 -0.09 8.25 16 4 O -0.52 -10.06 15.60 -3.49 -0.05 -10.11 16 5 C -0.15 -1.87 5.48 -104.72 -0.57 -2.45 16 6 C -0.07 -0.57 7.46 -39.27 -0.29 -0.86 16 7 C -0.16 -1.08 10.05 -39.60 -0.40 -1.47 16 8 C -0.05 -0.33 10.02 -39.64 -0.40 -0.72 16 9 C -0.19 -1.66 6.27 -104.12 -0.65 -2.31 16 10 C 0.17 2.01 6.70 -38.44 -0.26 1.76 16 11 O -0.28 -3.64 10.46 -28.05 -0.29 -3.93 16 12 C 0.04 0.33 8.01 38.06 0.30 0.64 16 13 C -0.11 -0.65 7.12 -26.50 -0.19 -0.84 16 14 C 0.14 2.05 2.52 -67.93 -0.17 1.88 16 15 C -0.12 -1.76 5.20 -26.73 -0.14 -1.90 16 16 C -0.13 -2.41 5.50 -26.73 -0.15 -2.55 16 17 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 18 N -0.73 -18.39 5.12 -53.43 -0.27 -18.66 16 19 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 C -0.12 -2.06 5.39 -26.76 -0.14 -2.21 16 28 C -0.12 -1.67 5.16 -26.76 -0.14 -1.81 16 29 H 0.06 0.43 7.20 -51.93 -0.37 0.06 16 30 H 0.07 0.62 6.46 -51.93 -0.34 0.28 16 31 H 0.08 0.60 5.05 -51.93 -0.26 0.34 16 32 H 0.15 1.02 4.62 -52.49 -0.24 0.78 16 33 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 1.75 6.90 -51.93 -0.36 1.39 16 40 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.38 10.40 7.80 -40.82 -0.32 10.09 16 46 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.06 0.81 6.70 -51.93 -0.35 0.46 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -35.52 390.40 -10.45 -45.98 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.68 Total: 6.89 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.25 Total: -7.54 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.03 Total: -54.74 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.35 Total: -14.04 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.52 -10.45 -45.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963943798.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.766 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds