Wall clock time and date at job start Wed Apr 1 2020 03:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00139 * 2 1 4 4 O 1.21592 * 119.99941 * 176.56991 * 3 2 1 5 5 C 1.47533 * 120.00070 * 356.84107 * 3 2 1 6 6 C 1.39527 * 120.05005 * 332.47430 * 5 3 2 7 7 C 1.37789 * 120.18740 * 179.81299 * 6 5 3 8 8 C 1.38644 * 119.96966 * 0.40358 * 7 6 5 9 9 C 1.37658 * 120.32443 * 359.67474 * 8 7 6 10 10 C 1.38879 * 120.87494 * 0.30229 * 9 8 7 11 11 O 1.35852 * 111.32187 * 179.30275 * 10 9 8 12 12 C 1.43771 * 109.29194 * 18.84077 * 11 10 9 13 13 C 1.51670 * 132.13984 * 180.54487 * 9 8 7 14 14 C 1.46502 * 120.00018 * 180.02562 * 2 1 3 15 15 C 1.52999 * 109.47325 * 59.99584 * 14 2 1 16 16 C 1.53000 * 109.47087 * 180.02562 * 15 14 2 17 17 C 1.52999 * 109.47208 * 60.00075 * 16 15 14 18 18 N 1.46502 * 109.46823 * 179.97438 * 17 16 15 19 19 C 1.36931 * 120.00185 * 274.99717 * 18 17 16 20 20 H 1.08001 * 120.00211 * 0.02562 * 19 18 17 21 21 C 1.38806 * 120.00276 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00016 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00145 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47161 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47164 * 120.00405 * 23 21 19 26 26 H 1.48498 * 109.47079 * 240.00057 * 23 21 19 27 27 C 1.52999 * 109.47035 * 299.99957 * 17 16 15 28 28 C 1.52999 * 109.46823 * 299.99748 * 14 2 1 29 29 H 1.08998 * 109.47215 * 96.04050 * 1 2 3 30 30 H 1.09002 * 109.47161 * 216.04325 * 1 2 3 31 31 H 1.09001 * 109.47179 * 336.04402 * 1 2 3 32 32 H 1.07996 * 119.91103 * 0.09078 * 6 5 3 33 33 H 1.07994 * 120.01454 * 180.13188 * 7 6 5 34 34 H 1.08002 * 119.84165 * 179.69423 * 8 7 6 35 35 H 1.09003 * 110.75138 * 90.66826 * 12 11 10 36 36 H 1.08997 * 110.75615 * 213.84504 * 12 11 10 37 37 H 1.09004 * 110.94469 * 46.13485 * 13 9 8 38 38 H 1.09000 * 110.98171 * 282.44740 * 13 9 8 39 39 H 1.09001 * 109.47146 * 180.02562 * 14 2 1 40 40 H 1.08997 * 109.47069 * 300.00662 * 15 14 2 41 41 H 1.09004 * 109.47021 * 60.00243 * 15 14 2 42 42 H 1.09006 * 109.46920 * 299.99865 * 16 15 14 43 43 H 1.09001 * 109.47086 * 180.02562 * 16 15 14 44 44 H 1.09001 * 109.46934 * 60.00213 * 17 16 15 45 45 H 0.96999 * 119.99940 * 95.00534 * 18 17 16 46 46 H 0.96997 * 119.99706 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.47468 * 299.99929 * 27 17 16 48 48 H 1.09004 * 109.47021 * 180.02562 * 27 17 16 49 49 H 1.09004 * 109.47504 * 299.99716 * 28 14 2 50 50 H 1.08999 * 109.47668 * 60.00251 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3531 1.1681 0.0630 5 6 1.4029 2.4439 -0.0704 6 6 0.1542 2.4973 -0.6906 7 6 -0.5373 3.6874 -0.7545 8 6 0.0117 4.8376 -0.2089 9 6 1.2437 4.7967 0.4038 10 6 1.9615 3.6103 0.4824 11 8 3.1521 3.7940 1.1104 12 6 3.1058 5.0146 1.8686 13 6 2.0770 5.8647 1.0860 14 6 2.1975 -1.2687 -0.0006 15 6 1.8278 -2.0706 -1.2501 16 6 2.5923 -3.3958 -1.2503 17 6 2.2222 -4.1984 -0.0014 18 7 2.9539 -5.4676 -0.0020 19 6 2.4542 -6.5456 -0.6825 20 1 1.5209 -6.4602 -1.2192 21 6 3.1471 -7.7484 -0.6827 22 7 4.2843 -7.8528 -0.0282 23 14 2.4658 -9.2188 -1.6117 24 1 1.1836 -8.8438 -2.2603 25 1 3.4394 -9.6431 -2.6496 26 1 2.2329 -10.3383 -0.6643 27 6 2.5919 -3.3966 1.2481 28 6 1.8278 -2.0715 1.2484 29 1 -0.3633 -0.1081 -1.0219 30 1 -0.3633 -0.8309 0.6047 31 1 -0.3633 0.9391 0.4173 32 1 -0.2736 1.6024 -1.1177 33 1 -1.5046 3.7251 -1.2333 34 1 -0.5299 5.7704 -0.2646 35 1 2.7578 4.8255 2.8842 36 1 4.0821 5.4992 1.8805 37 1 1.4668 6.4604 1.7649 38 1 2.5737 6.4999 0.3526 39 1 3.2691 -1.0696 0.0000 40 1 0.7562 -2.2696 -1.2502 41 1 2.0911 -1.4986 -2.1399 42 1 3.6641 -3.1970 -1.2501 43 1 2.3293 -3.9669 -2.1407 44 1 1.1505 -4.3972 -0.0017 45 1 3.7922 -5.5444 0.4798 46 1 4.7683 -8.6934 -0.0280 47 1 3.6636 -3.1977 1.2485 48 1 2.3286 -3.9685 2.1379 49 1 2.0912 -1.5003 2.1386 50 1 0.7562 -2.2707 1.2484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963943798.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:33 Heat of formation + Delta-G solvation = -37.539625 kcal Electronic energy + Delta-G solvation = -30249.149472 eV Core-core repulsion = 26241.412242 eV Total energy + Delta-G solvation = -4007.737231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.34837 -41.15049 -39.35318 -38.30487 -36.79765 -35.22234 -33.78170 -32.62393 -31.73445 -31.25936 -30.42371 -29.00260 -27.96384 -25.84546 -24.77847 -23.95438 -23.58438 -22.90733 -22.30614 -20.79970 -20.41330 -19.10040 -18.47438 -18.00604 -17.76888 -17.34173 -17.04808 -16.75363 -16.21212 -16.18651 -15.75359 -15.38216 -15.22473 -15.00477 -14.62675 -14.50277 -14.42825 -14.07815 -13.98999 -13.86092 -13.61328 -13.36105 -13.16351 -13.11601 -13.01395 -12.83979 -12.78299 -12.55719 -12.39845 -12.20103 -12.09710 -12.08246 -11.93420 -11.72996 -11.62404 -11.51402 -11.16048 -10.86612 -10.79846 -9.91979 -9.64332 -9.15525 -8.99705 -7.92554 -5.21257 -0.12935 0.29987 1.47302 1.48516 1.58391 1.75312 1.92652 2.28315 2.57242 2.72020 3.40373 3.42384 3.44920 3.65021 3.75584 3.83168 3.86034 3.95820 4.10158 4.13498 4.19884 4.28104 4.34566 4.37272 4.40002 4.43645 4.51475 4.53688 4.56734 4.59912 4.71527 4.79116 4.80451 4.85076 4.89147 4.96700 5.00297 5.09273 5.11530 5.17629 5.21200 5.25841 5.32517 5.40933 5.48889 5.53451 5.58058 5.62617 5.65743 6.12704 6.29739 6.36577 7.12445 7.34790 8.11873 8.34662 9.31628 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.002073 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.791046 B =13506.737614 C =14105.110657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.600 5.600 3 C 0.548 3.452 4 O -0.586 6.586 5 C -0.184 4.184 6 C -0.066 4.066 7 C -0.149 4.149 8 C -0.041 4.041 9 C -0.194 4.194 10 C 0.129 3.871 11 O -0.325 6.325 12 C 0.033 3.967 13 C -0.099 4.099 14 C 0.145 3.855 15 C -0.105 4.105 16 C -0.123 4.123 17 C 0.175 3.825 18 N -0.741 5.741 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.083 4.083 22 N -0.974 5.974 23 Si 0.973 3.027 24 H -0.262 1.262 25 H -0.297 1.297 26 H -0.294 1.294 27 C -0.113 4.113 28 C -0.105 4.105 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.369 0.631 46 H 0.249 0.751 47 H 0.044 0.956 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 33.284 1.606 37.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.330 5.330 3 C 0.339 3.661 4 O -0.467 6.467 5 C -0.188 4.188 6 C -0.084 4.084 7 C -0.167 4.167 8 C -0.059 4.059 9 C -0.195 4.195 10 C 0.082 3.918 11 O -0.239 6.239 12 C -0.041 4.041 13 C -0.136 4.136 14 C 0.042 3.958 15 C -0.144 4.144 16 C -0.164 4.164 17 C 0.067 3.933 18 N -0.380 5.380 19 C -0.364 4.364 20 H 0.098 0.902 21 C -0.275 4.275 22 N -0.625 5.625 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.225 1.225 26 H -0.222 1.222 27 C -0.152 4.152 28 C -0.144 4.144 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.189 0.811 33 H 0.190 0.810 34 H 0.181 0.819 35 H 0.104 0.896 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.201 0.799 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.554 33.039 1.559 36.550 hybrid contribution 1.131 -1.310 -0.131 1.736 sum -14.422 31.730 1.428 34.883 Atomic orbital electron populations 1.22725 0.77380 1.05209 1.03709 1.47828 1.08473 1.04474 1.72264 1.18769 0.86758 0.84765 0.75805 1.90776 1.15968 1.87826 1.52131 1.19280 0.98197 0.90331 1.10986 1.22023 0.90412 1.01264 0.94689 1.21473 1.02239 0.91065 1.01893 1.20978 0.91974 1.00434 0.92467 1.21182 0.98111 0.93743 1.06423 1.19909 0.85235 0.94066 0.92594 1.86946 1.30842 1.44768 1.61316 1.24256 1.02765 0.81706 0.95334 1.21858 0.95773 0.96364 0.99615 1.20977 0.96537 0.82383 0.95899 1.21704 1.01605 0.94645 0.96475 1.22036 0.98943 0.95497 0.99954 1.20454 0.95357 0.84624 0.92838 1.42714 1.25957 1.08157 1.61143 1.19689 1.03891 0.90029 1.22756 0.90241 1.25605 0.97989 1.01048 1.02852 1.69848 1.17837 1.25957 1.48875 0.85070 0.77756 0.79428 0.77524 1.18617 1.22474 1.22176 1.21636 0.99645 0.95664 0.98241 1.21676 1.01644 0.94386 0.96711 0.89524 0.89595 0.88233 0.81138 0.81047 0.81890 0.89593 0.85934 0.86022 0.88029 0.91734 0.89314 0.92223 0.94656 0.93057 0.92824 0.79931 0.94221 0.93674 0.91754 0.91949 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.71 7.81 127.77 1.00 1.70 16 2 N -0.60 -14.85 2.76 -826.36 -2.28 -17.14 16 3 C 0.55 16.98 7.47 86.69 0.65 17.63 16 4 O -0.59 -24.32 15.60 4.39 0.07 -24.25 16 5 C -0.18 -4.43 5.48 -19.93 -0.11 -4.54 16 6 C -0.07 -0.94 7.46 22.47 0.17 -0.78 16 7 C -0.15 -1.34 10.05 22.26 0.22 -1.12 16 8 C -0.04 -0.40 10.02 22.23 0.22 -0.17 16 9 C -0.19 -3.01 6.27 -19.54 -0.12 -3.14 16 10 C 0.13 3.16 6.70 23.01 0.15 3.31 16 11 O -0.33 -9.03 10.46 -83.50 -0.87 -9.90 16 12 C 0.03 0.50 8.01 72.57 0.58 1.08 16 13 C -0.10 -1.00 7.12 30.74 0.22 -0.79 16 14 C 0.15 4.24 2.52 44.99 0.11 4.35 16 15 C -0.11 -2.95 5.20 30.59 0.16 -2.79 16 16 C -0.12 -4.55 5.50 30.59 0.17 -4.38 16 17 C 0.18 6.97 2.77 44.99 0.12 7.09 16 18 N -0.74 -38.38 5.12 -322.95 -1.65 -40.03 16 19 C -0.23 -12.98 9.93 84.03 0.83 -12.15 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 22 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 23 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 27 C -0.11 -3.91 5.39 30.58 0.16 -3.74 16 28 C -0.11 -2.89 5.16 30.58 0.16 -2.73 16 29 H 0.09 0.82 7.20 -2.39 -0.02 0.81 16 30 H 0.09 1.05 6.46 -2.39 -0.02 1.04 16 31 H 0.10 1.12 5.05 -2.39 -0.01 1.10 16 32 H 0.17 1.63 4.62 -2.91 -0.01 1.62 16 33 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 34 H 0.16 0.45 8.06 -2.91 -0.02 0.42 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 2.39 6.90 -2.39 -0.02 2.37 16 40 H 0.09 2.03 7.67 -2.39 -0.02 2.02 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 45 H 0.37 20.91 7.80 -92.71 -0.72 20.19 16 46 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 47 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 50 H 0.09 2.03 6.70 -2.39 -0.02 2.01 16 Total: -1.00 -83.39 390.40 2.97 -80.41 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.23 Total: 28.69 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.17 Total: -5.57 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -3.65 Total: -118.25 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.80 Total: -34.15 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -83.39 2.97 -80.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963943798.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.872 kcal (2) G-P(sol) polarization free energy of solvation -83.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds