Wall clock time and date at job start Wed Apr 1 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42893 * 109.47356 * 2 1 4 4 C 1.35709 * 117.00113 * 179.97438 * 3 2 1 5 5 C 1.39016 * 119.91178 * 0.02834 * 4 3 2 6 6 C 1.37675 * 120.09047 * 179.97438 * 5 4 3 7 7 C 1.39761 * 119.90817 * 0.02562 * 6 5 4 8 8 C 1.47599 * 120.08420 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99794 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00427 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00510 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47438 * 180.02562 * 11 10 8 13 13 H 1.09005 * 115.51621 * 29.58675 * 12 11 10 14 14 C 1.52993 * 117.44660 * 244.24363 * 12 11 10 15 15 H 1.09004 * 119.53798 * 4.11878 * 14 12 11 16 16 C 1.57694 * 116.11716 * 161.63677 * 14 12 11 17 17 N 1.48154 * 104.67240 * 87.30706 * 16 14 12 18 18 C 1.36934 * 127.83726 * 139.77785 * 17 16 14 19 19 H 1.08003 * 119.99533 * 344.33418 * 18 17 16 20 20 C 1.38807 * 119.99793 * 164.33763 * 18 17 16 21 21 N 1.31611 * 120.00461 * 350.56819 * 20 18 17 22 22 Si 1.86809 * 119.99750 * 170.56765 * 20 18 17 23 23 H 1.48504 * 109.46859 * 90.00328 * 22 20 18 24 24 H 1.48498 * 109.47190 * 209.99894 * 22 20 18 25 25 H 1.48492 * 109.46984 * 330.00093 * 22 20 18 26 26 C 1.48151 * 104.32316 * 319.77904 * 17 16 14 27 27 C 1.52996 * 117.44493 * 175.00144 * 12 11 10 28 28 H 1.09004 * 119.53937 * 355.88365 * 27 12 11 29 29 C 1.39714 * 119.82406 * 359.97280 * 7 6 5 30 30 C 1.37716 * 119.91383 * 0.02562 * 29 7 6 31 31 C 1.50699 * 119.95853 * 180.29462 * 30 29 7 32 32 H 1.09004 * 109.47633 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46796 * 299.99900 * 1 2 3 34 34 H 1.09000 * 109.47561 * 59.99880 * 1 2 3 35 35 H 1.09004 * 109.46310 * 240.00188 * 2 1 3 36 36 H 1.08999 * 109.46962 * 120.00580 * 2 1 3 37 37 H 1.08002 * 119.95593 * 359.97438 * 5 4 3 38 38 H 1.07996 * 120.04831 * 179.97438 * 6 5 4 39 39 H 0.97000 * 119.99596 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.46871 * 300.00829 * 11 10 8 41 41 H 1.08999 * 109.46876 * 60.00296 * 11 10 8 42 42 H 1.09000 * 110.91818 * 328.23317 * 16 14 12 43 43 H 1.08996 * 109.93822 * 205.88994 * 16 14 12 44 44 H 0.97000 * 120.00842 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.40311 * 280.80018 * 26 17 16 46 46 H 1.08994 * 110.40626 * 158.37040 * 26 17 16 47 47 H 1.08009 * 120.03995 * 180.02562 * 29 7 6 48 48 H 1.08998 * 109.47383 * 269.73334 * 31 30 29 49 49 H 1.09011 * 109.46712 * 29.72579 * 31 30 29 50 50 H 1.09000 * 109.47158 * 149.72147 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 6 4.1969 0.4212 0.0005 6 6 5.5623 0.5973 0.0005 7 6 6.0985 1.8880 0.0011 8 6 7.5618 2.0812 0.0017 9 8 8.0265 3.2048 0.0018 10 7 8.3828 1.0125 0.0022 11 6 9.8352 1.2043 0.0022 12 6 10.5297 -0.1589 0.0021 13 1 9.9807 -0.9656 -0.4837 14 6 11.3755 -0.5195 1.2249 15 1 11.4057 0.1600 2.0767 16 6 11.7029 -2.0502 1.4156 17 7 12.9378 -2.2709 0.6274 18 6 14.0208 -3.0399 0.9605 19 1 14.1576 -3.3667 1.9808 20 6 14.9426 -3.3993 -0.0131 21 7 14.6854 -3.1632 -1.2820 22 14 16.5482 -4.2182 0.4779 23 1 16.3666 -5.6919 0.4970 24 1 17.6053 -3.8625 -0.5025 25 1 16.9490 -3.7511 1.8292 26 6 12.7352 -1.4709 -0.6030 27 6 12.0550 -0.1732 -0.1162 28 1 12.5914 0.7643 -0.2635 29 6 5.2457 2.9946 0.0012 30 6 3.8810 2.8101 0.0011 31 6 2.9602 4.0030 -0.0056 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 1.8932 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 3.7818 -0.5759 0.0004 38 1 6.2182 -0.2607 0.0008 39 1 8.0120 0.1161 0.0017 40 1 10.1281 1.7611 -0.8879 41 1 10.1280 1.7616 0.8920 42 1 10.8927 -2.6719 1.0346 43 1 11.8814 -2.2637 2.4695 44 1 15.3297 -3.4140 -1.9624 45 1 12.0862 -2.0021 -1.2991 46 1 13.6930 -1.2453 -1.0716 47 1 5.6563 3.9936 0.0012 48 1 2.7337 4.2929 1.0204 49 1 3.4452 4.8334 -0.5190 50 1 2.0361 3.7458 -0.5231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978791105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:23 Heat of formation + Delta-G solvation = 3.540487 kcal Electronic energy + Delta-G solvation = -28591.383316 eV Core-core repulsion = 24585.427452 eV Total energy + Delta-G solvation = -4005.955863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.87290 -39.72978 -38.67085 -37.52763 -35.02390 -33.67385 -33.09485 -32.10667 -30.94753 -30.30609 -27.74186 -27.02897 -26.76643 -25.11476 -24.39811 -23.12643 -21.71695 -21.10530 -20.61987 -19.75457 -19.26035 -18.58700 -17.58429 -16.80012 -16.76344 -16.63554 -15.62620 -15.28692 -15.05106 -14.80168 -14.53646 -14.24074 -14.16452 -13.99449 -13.66567 -13.47504 -13.17494 -13.13445 -13.08624 -12.83019 -12.76438 -12.65924 -12.30038 -12.04851 -12.03002 -11.86555 -11.26112 -11.19976 -11.16755 -11.08873 -10.83083 -10.63909 -10.28625 -10.14025 -10.07789 -9.74811 -9.42744 -9.25746 -9.15346 -8.97692 -8.64937 -8.49220 -6.88382 -5.81584 -3.15727 0.62481 0.95073 2.67912 2.69384 3.09255 3.36882 3.42687 3.44801 3.58638 4.15557 4.25853 4.35749 4.40607 4.44822 4.52845 4.58671 4.72203 4.81854 4.84647 4.92015 5.03826 5.22833 5.25642 5.26784 5.30387 5.37859 5.39693 5.43702 5.49693 5.51198 5.53846 5.75536 5.77497 5.81460 5.87013 5.90785 5.92053 5.95984 6.08416 6.22885 6.30964 6.38458 6.54169 6.64805 6.69271 6.89650 6.92570 7.34324 7.46252 7.51663 7.70403 8.15952 8.19251 9.09318 9.72332 10.49422 11.32829 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.001691 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.697417 B =16552.933132 C =17537.590364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.310 6.310 4 C 0.153 3.847 5 C -0.213 4.213 6 C -0.048 4.048 7 C -0.168 4.168 8 C 0.560 3.440 9 O -0.544 6.544 10 N -0.720 5.720 11 C 0.155 3.845 12 C -0.154 4.154 13 H 0.102 0.898 14 C -0.172 4.172 15 H 0.107 0.893 16 C 0.156 3.844 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.184 3.816 27 C -0.162 4.162 28 H 0.102 0.898 29 C -0.022 4.022 30 C -0.128 4.128 31 C -0.104 4.104 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.400 0.600 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.026 0.974 43 H 0.048 0.952 44 H 0.254 0.746 45 H 0.024 0.976 46 H 0.089 0.911 47 H 0.143 0.857 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.440 8.974 1.752 29.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.223 6.223 4 C 0.107 3.893 5 C -0.232 4.232 6 C -0.067 4.067 7 C -0.171 4.171 8 C 0.347 3.653 9 O -0.422 6.422 10 N -0.371 5.371 11 C 0.032 3.968 12 C -0.173 4.173 13 H 0.120 0.880 14 C -0.192 4.192 15 H 0.125 0.875 16 C 0.029 3.971 17 N -0.317 5.317 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.561 5.561 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.058 3.942 27 C -0.182 4.182 28 H 0.120 0.880 29 C -0.041 4.041 30 C -0.129 4.129 31 C -0.161 4.161 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.235 0.765 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.107 0.893 47 H 0.161 0.839 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.986 9.757 1.658 29.684 hybrid contribution 0.785 -1.230 0.179 1.470 sum -27.201 8.527 1.837 28.565 Atomic orbital electron populations 1.21782 0.92520 1.03047 1.03586 1.22868 0.96069 0.81699 1.01752 1.86030 1.18831 1.29617 1.87822 1.19044 0.82397 0.93593 0.94289 1.21155 0.93990 0.98268 1.09803 1.21108 0.94716 0.96216 0.94669 1.19848 0.93183 0.94034 1.10021 1.18127 0.86104 0.84675 0.76374 1.90774 1.77499 1.23617 1.50348 1.45951 1.07175 1.09042 1.74938 1.20900 0.77821 0.95915 1.02209 1.22547 0.94409 0.96762 1.03574 0.87984 1.24717 1.03707 0.99413 0.91333 0.87491 1.21712 0.89762 0.89741 0.95861 1.45148 1.14790 1.53353 1.18457 1.18983 0.98439 1.24582 0.93589 0.90604 1.24891 0.99851 1.00409 0.95088 1.69892 1.35435 1.51929 0.98881 0.86126 0.83075 0.79049 0.77531 1.21461 1.21523 1.20550 1.21076 0.99010 0.85376 0.88726 1.24179 0.90907 1.01939 1.01200 0.87989 1.21001 0.90880 0.99245 0.92993 1.19218 0.93983 0.92779 1.06875 1.20611 0.98383 0.94553 1.02504 0.90207 0.91449 0.91462 0.91724 0.91709 0.84794 0.85133 0.76458 0.91016 0.91318 0.95618 0.93339 0.93538 0.95857 0.89255 0.83931 0.91245 0.91349 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 10.28 37.16 0.38 -0.20 16 2 C 0.05 0.27 5.45 37.16 0.20 0.47 16 3 O -0.31 -2.53 9.16 -18.83 -0.17 -2.71 16 4 C 0.15 1.39 6.67 -39.02 -0.26 1.13 16 5 C -0.21 -1.76 9.01 -39.50 -0.36 -2.11 16 6 C -0.05 -0.43 9.53 -39.22 -0.37 -0.81 16 7 C -0.17 -1.88 5.88 -104.96 -0.62 -2.49 16 8 C 0.56 7.56 7.76 -12.44 -0.10 7.47 16 9 O -0.54 -9.20 16.34 5.29 0.09 -9.12 16 10 N -0.72 -8.70 5.51 -61.33 -0.34 -9.04 16 11 C 0.15 2.13 5.95 -4.04 -0.02 2.10 16 12 C -0.15 -2.34 5.34 -90.63 -0.48 -2.82 16 13 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 14 C -0.17 -2.98 7.03 -87.39 -0.61 -3.60 16 15 H 0.11 1.72 8.12 -51.93 -0.42 1.30 16 16 C 0.16 3.21 7.10 -0.57 0.00 3.20 16 17 N -0.59 -15.11 3.38 -166.73 -0.56 -15.67 16 18 C -0.23 -6.32 10.35 -15.06 -0.16 -6.48 16 19 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 20 C -0.01 -0.15 5.40 -17.44 -0.09 -0.24 16 21 N -0.92 -26.66 10.88 55.49 0.60 -26.06 16 22 Si 0.91 21.83 29.56 -169.99 -5.03 16.80 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.18 4.37 5.70 -2.41 -0.01 4.35 16 27 C -0.16 -3.03 6.77 -89.22 -0.60 -3.64 16 28 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 29 C -0.02 -0.24 9.23 -39.22 -0.36 -0.60 16 30 C -0.13 -1.21 5.89 -104.54 -0.62 -1.83 16 31 C -0.10 -0.77 9.78 36.01 0.35 -0.42 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 36 H 0.06 0.29 7.65 -51.93 -0.40 -0.10 16 37 H 0.13 0.79 6.28 -52.49 -0.33 0.46 16 38 H 0.13 0.90 6.39 -52.49 -0.34 0.56 16 39 H 0.40 3.88 6.42 -40.82 -0.26 3.62 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 2.38 6.53 -51.93 -0.34 2.05 16 47 H 0.14 1.50 7.64 -52.48 -0.40 1.10 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.44 8.08 -51.92 -0.42 0.02 16 50 H 0.07 0.51 7.53 -51.93 -0.39 0.12 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -32.95 406.99 -10.89 -43.84 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.88 Total: 2.32 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.74 Total: -6.50 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.30 Total: -50.77 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.95 -10.89 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978791105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.381 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds