Wall clock time and date at job start Wed Apr 1 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42893 * 109.47356 * 2 1 4 4 C 1.35709 * 117.00113 * 179.97438 * 3 2 1 5 5 C 1.39016 * 119.91178 * 0.02834 * 4 3 2 6 6 C 1.37675 * 120.09047 * 179.97438 * 5 4 3 7 7 C 1.39761 * 119.90817 * 0.02562 * 6 5 4 8 8 C 1.47599 * 120.08420 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99794 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00427 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00510 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47438 * 180.02562 * 11 10 8 13 13 H 1.09005 * 115.51621 * 29.58675 * 12 11 10 14 14 C 1.52993 * 117.44660 * 244.24363 * 12 11 10 15 15 H 1.09004 * 119.53798 * 4.11878 * 14 12 11 16 16 C 1.57694 * 116.11716 * 161.63677 * 14 12 11 17 17 N 1.48154 * 104.67240 * 87.30706 * 16 14 12 18 18 C 1.36934 * 127.83726 * 139.77785 * 17 16 14 19 19 H 1.08003 * 119.99533 * 344.33418 * 18 17 16 20 20 C 1.38807 * 119.99793 * 164.33763 * 18 17 16 21 21 N 1.31611 * 120.00461 * 350.56819 * 20 18 17 22 22 Si 1.86809 * 119.99750 * 170.56765 * 20 18 17 23 23 H 1.48504 * 109.46859 * 90.00328 * 22 20 18 24 24 H 1.48498 * 109.47190 * 209.99894 * 22 20 18 25 25 H 1.48492 * 109.46984 * 330.00093 * 22 20 18 26 26 C 1.48151 * 104.32316 * 319.77904 * 17 16 14 27 27 C 1.52996 * 117.44493 * 175.00144 * 12 11 10 28 28 H 1.09004 * 119.53937 * 355.88365 * 27 12 11 29 29 C 1.39714 * 119.82406 * 359.97280 * 7 6 5 30 30 C 1.37716 * 119.91383 * 0.02562 * 29 7 6 31 31 C 1.50699 * 119.95853 * 180.29462 * 30 29 7 32 32 H 1.09004 * 109.47633 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46796 * 299.99900 * 1 2 3 34 34 H 1.09000 * 109.47561 * 59.99880 * 1 2 3 35 35 H 1.09004 * 109.46310 * 240.00188 * 2 1 3 36 36 H 1.08999 * 109.46962 * 120.00580 * 2 1 3 37 37 H 1.08002 * 119.95593 * 359.97438 * 5 4 3 38 38 H 1.07996 * 120.04831 * 179.97438 * 6 5 4 39 39 H 0.97000 * 119.99596 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.46871 * 300.00829 * 11 10 8 41 41 H 1.08999 * 109.46876 * 60.00296 * 11 10 8 42 42 H 1.09000 * 110.91818 * 328.23317 * 16 14 12 43 43 H 1.08996 * 109.93822 * 205.88994 * 16 14 12 44 44 H 0.97000 * 120.00842 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.40311 * 280.80018 * 26 17 16 46 46 H 1.08994 * 110.40626 * 158.37040 * 26 17 16 47 47 H 1.08009 * 120.03995 * 180.02562 * 29 7 6 48 48 H 1.08998 * 109.47383 * 269.73334 * 31 30 29 49 49 H 1.09011 * 109.46712 * 29.72579 * 31 30 29 50 50 H 1.09000 * 109.47158 * 149.72147 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 6 4.1969 0.4212 0.0005 6 6 5.5623 0.5973 0.0005 7 6 6.0985 1.8880 0.0011 8 6 7.5618 2.0812 0.0017 9 8 8.0265 3.2048 0.0018 10 7 8.3828 1.0125 0.0022 11 6 9.8352 1.2043 0.0022 12 6 10.5297 -0.1589 0.0021 13 1 9.9807 -0.9656 -0.4837 14 6 11.3755 -0.5195 1.2249 15 1 11.4057 0.1600 2.0767 16 6 11.7029 -2.0502 1.4156 17 7 12.9378 -2.2709 0.6274 18 6 14.0208 -3.0399 0.9605 19 1 14.1576 -3.3667 1.9808 20 6 14.9426 -3.3993 -0.0131 21 7 14.6854 -3.1632 -1.2820 22 14 16.5482 -4.2182 0.4779 23 1 16.3666 -5.6919 0.4970 24 1 17.6053 -3.8625 -0.5025 25 1 16.9490 -3.7511 1.8292 26 6 12.7352 -1.4709 -0.6030 27 6 12.0550 -0.1732 -0.1162 28 1 12.5914 0.7643 -0.2635 29 6 5.2457 2.9946 0.0012 30 6 3.8810 2.8101 0.0011 31 6 2.9602 4.0030 -0.0056 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 1.8932 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 3.7818 -0.5759 0.0004 38 1 6.2182 -0.2607 0.0008 39 1 8.0120 0.1161 0.0017 40 1 10.1281 1.7611 -0.8879 41 1 10.1280 1.7616 0.8920 42 1 10.8927 -2.6719 1.0346 43 1 11.8814 -2.2637 2.4695 44 1 15.3297 -3.4140 -1.9624 45 1 12.0862 -2.0021 -1.2991 46 1 13.6930 -1.2453 -1.0716 47 1 5.6563 3.9936 0.0012 48 1 2.7337 4.2929 1.0204 49 1 3.4452 4.8334 -0.5190 50 1 2.0361 3.7458 -0.5231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978791105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:22 Heat of formation + Delta-G solvation = -15.276491 kcal Electronic energy + Delta-G solvation = -28592.199281 eV Core-core repulsion = 24585.427452 eV Total energy + Delta-G solvation = -4006.771829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.60867 -40.73532 -40.08116 -38.26377 -36.37994 -35.10176 -34.00988 -32.69829 -32.55500 -31.11009 -29.03913 -28.66969 -27.72508 -26.63242 -25.03529 -23.99021 -22.79708 -22.26977 -21.84614 -20.97954 -20.77983 -19.19655 -18.83006 -18.48016 -17.59222 -17.11927 -16.83500 -16.50221 -16.34374 -16.06064 -15.63757 -15.25393 -15.22433 -14.81824 -14.74478 -14.62585 -14.48383 -14.18849 -14.09726 -13.66656 -13.61967 -13.35900 -13.29724 -13.17812 -12.89433 -12.84595 -12.70551 -12.64476 -12.57465 -12.31714 -11.96393 -11.89468 -11.75585 -11.74421 -11.65041 -11.20841 -10.92085 -10.71035 -10.55463 -10.11210 -9.93627 -9.19196 -8.90237 -7.91969 -5.27778 -0.14746 0.27016 1.46288 1.48055 1.57397 1.79398 2.05935 2.17040 2.47702 2.74711 2.80042 3.26204 3.59711 3.65615 3.70825 3.74277 3.76998 3.87717 4.08456 4.09134 4.17097 4.19440 4.26437 4.27045 4.32568 4.39828 4.44940 4.56402 4.62297 4.68593 4.74706 4.81682 4.83801 4.88354 4.93288 4.96870 5.02321 5.15396 5.16161 5.19777 5.25084 5.29009 5.34616 5.38100 5.43718 5.45592 5.53379 5.66860 5.67103 6.18175 6.34488 6.51250 7.01267 7.17094 7.68787 8.47144 9.21897 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.001691 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.697417 B =16552.933132 C =17537.590364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.320 6.320 4 C 0.151 3.849 5 C -0.212 4.212 6 C -0.043 4.043 7 C -0.187 4.187 8 C 0.560 3.440 9 O -0.585 6.585 10 N -0.709 5.709 11 C 0.163 3.837 12 C -0.113 4.113 13 H 0.111 0.889 14 C -0.158 4.158 15 H 0.128 0.872 16 C 0.150 3.850 17 N -0.621 5.621 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.190 3.810 27 C -0.178 4.178 28 H 0.110 0.890 29 C -0.033 4.033 30 C -0.139 4.139 31 C -0.102 4.102 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.414 0.586 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.055 0.945 44 H 0.250 0.750 45 H 0.004 0.996 46 H 0.051 0.949 47 H 0.134 0.866 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.452 8.336 2.831 31.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.233 6.233 4 C 0.105 3.895 5 C -0.230 4.230 6 C -0.062 4.062 7 C -0.191 4.191 8 C 0.349 3.651 9 O -0.467 6.467 10 N -0.362 5.362 11 C 0.039 3.961 12 C -0.132 4.132 13 H 0.129 0.871 14 C -0.177 4.177 15 H 0.146 0.854 16 C 0.024 3.976 17 N -0.345 5.345 18 C -0.370 4.370 19 H 0.098 0.902 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.807 3.193 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.194 1.194 26 C 0.064 3.936 27 C -0.199 4.199 28 H 0.128 0.872 29 C -0.052 4.052 30 C -0.139 4.139 31 C -0.158 4.158 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.252 0.748 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.022 0.978 46 H 0.069 0.931 47 H 0.152 0.848 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -30.045 9.096 2.763 31.513 hybrid contribution 1.258 -1.070 -0.149 1.658 sum -28.787 8.026 2.614 29.999 Atomic orbital electron populations 1.21809 0.91571 1.04147 1.03214 1.23158 0.96892 0.80513 1.02739 1.86035 1.18237 1.31565 1.87454 1.19212 0.83097 0.93720 0.93504 1.21447 0.93572 0.99273 1.08744 1.21331 0.95453 0.95849 0.93559 1.19748 0.91709 0.95296 1.12301 1.18469 0.87098 0.84120 0.75377 1.90750 1.78320 1.25195 1.52429 1.45786 1.06313 1.09640 1.74413 1.20699 0.78700 0.94535 1.02125 1.22422 0.92071 0.97696 1.00994 0.87094 1.24650 1.03838 0.97376 0.91869 0.85389 1.21877 0.88135 0.91980 0.95578 1.45458 1.15976 1.53572 1.19454 1.19369 0.99391 1.24368 0.93864 0.90192 1.25724 1.03103 1.01675 0.95108 1.70085 1.36265 1.53345 0.99766 0.85087 0.78879 0.78025 0.77352 1.20996 1.21985 1.19419 1.20804 0.97214 0.87378 0.88201 1.23868 0.93423 0.99806 1.02767 0.87166 1.21009 0.91515 0.98967 0.93704 1.19406 0.93769 0.93897 1.06868 1.20626 0.98097 0.94149 1.02976 0.88361 0.91822 0.91850 0.90701 0.90648 0.82169 0.82910 0.74835 0.91372 0.91341 0.94923 0.92697 0.94131 0.97841 0.93082 0.84796 0.90680 0.90789 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 71.98 0.74 -0.08 16 2 C 0.04 0.33 5.45 71.98 0.39 0.72 16 3 O -0.32 -4.61 9.16 -90.30 -0.83 -5.43 16 4 C 0.15 2.48 6.67 22.63 0.15 2.63 16 5 C -0.21 -2.90 9.01 22.32 0.20 -2.70 16 6 C -0.04 -0.67 9.53 22.51 0.21 -0.45 16 7 C -0.19 -3.97 5.88 -20.08 -0.12 -4.09 16 8 C 0.56 14.54 7.76 86.71 0.67 15.22 16 9 O -0.59 -19.75 16.34 -3.99 -0.07 -19.82 16 10 N -0.71 -15.60 5.51 -466.22 -2.57 -18.17 16 11 C 0.16 4.14 5.95 86.38 0.51 4.65 16 12 C -0.11 -3.17 5.34 -10.80 -0.06 -3.23 16 13 H 0.11 3.01 8.04 -2.38 -0.02 2.99 16 14 C -0.16 -5.13 7.03 -8.70 -0.06 -5.19 16 15 H 0.13 3.70 8.12 -2.39 -0.02 3.68 16 16 C 0.15 5.96 7.10 87.72 0.62 6.58 16 17 N -0.62 -31.78 3.38 -681.40 -2.30 -34.08 16 18 C -0.24 -13.49 10.35 84.03 0.87 -12.62 16 19 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 20 C -0.06 -3.54 5.40 84.86 0.46 -3.08 16 21 N -0.95 -56.82 10.88 21.65 0.24 -56.59 16 22 Si 0.98 45.39 29.56 68.60 2.03 47.42 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 C 0.19 9.23 5.70 86.53 0.49 9.72 16 27 C -0.18 -6.55 6.77 -9.89 -0.07 -6.62 16 28 H 0.11 3.87 8.14 -2.38 -0.02 3.85 16 29 C -0.03 -0.69 9.23 22.50 0.21 -0.48 16 30 C -0.14 -2.51 5.89 -19.81 -0.12 -2.62 16 31 C -0.10 -1.44 9.78 71.24 0.70 -0.74 16 32 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.07 0.45 7.65 -2.38 -0.02 0.43 16 36 H 0.08 0.45 7.65 -2.39 -0.02 0.43 16 37 H 0.16 1.28 6.28 -2.91 -0.02 1.26 16 38 H 0.15 1.56 6.39 -2.91 -0.02 1.54 16 39 H 0.41 6.74 6.42 -92.71 -0.60 6.14 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.05 2.85 6.53 -2.39 -0.02 2.83 16 47 H 0.13 2.93 7.64 -2.91 -0.02 2.91 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 50 H 0.07 0.98 7.53 -2.39 -0.02 0.97 16 Total: -1.00 -73.09 406.99 2.67 -70.43 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.35 Total: 18.63 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.81 Total: -2.39 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -4.63 Total: -108.84 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.89 Total: -25.25 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.09 2.67 -70.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978791105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.152 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds