Wall clock time and date at job start Wed Apr 1 2020 03:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42903 * 109.47141 * 2 1 4 4 C 1.35907 * 116.99935 * 179.97438 * 3 2 1 5 5 C 1.38853 * 119.98417 * 0.02725 * 4 3 2 6 6 C 1.38243 * 120.23849 * 179.97438 * 5 4 3 7 7 C 1.38014 * 120.20790 * 359.75825 * 6 5 4 8 8 C 1.39565 * 119.95856 * 0.51548 * 7 6 5 9 9 C 1.47859 * 120.11424 * 179.74217 * 8 7 6 10 10 O 1.21545 * 120.00264 * 179.72732 * 9 8 7 11 11 N 1.34788 * 119.99911 * 359.72224 * 9 8 7 12 12 C 1.46499 * 119.99803 * 179.97438 * 11 9 8 13 13 C 1.53586 * 112.66831 * 62.68894 * 12 11 9 14 14 C 1.54216 * 106.67636 * 121.44429 * 13 12 11 15 15 C 1.54758 * 104.15857 * 24.93808 * 14 13 12 16 16 C 1.54771 * 103.21249 * 322.19045 * 15 14 13 17 17 H 1.08995 * 112.62085 * 274.66063 * 16 15 14 18 18 N 1.46982 * 108.68772 * 150.20058 * 16 15 14 19 19 C 1.36931 * 125.58122 * 65.87191 * 18 16 15 20 20 H 1.08003 * 119.99707 * 348.76495 * 19 18 16 21 21 C 1.38809 * 120.00113 * 168.76866 * 19 18 16 22 22 N 1.31616 * 120.00194 * 350.06574 * 21 19 18 23 23 Si 1.86808 * 119.99959 * 170.06331 * 21 19 18 24 24 H 1.48494 * 109.47076 * 94.43000 * 23 21 19 25 25 H 1.48506 * 109.46952 * 214.42773 * 23 21 19 26 26 H 1.48503 * 109.46974 * 334.42593 * 23 21 19 27 27 C 1.47372 * 108.84121 * 245.87036 * 18 16 15 28 28 C 1.54870 * 104.81921 * 24.69104 * 27 18 16 29 29 C 1.38452 * 119.98420 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.46731 * 60.00091 * 1 2 3 31 31 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46889 * 300.00340 * 1 2 3 33 33 H 1.08995 * 109.46889 * 239.99660 * 2 1 3 34 34 H 1.08996 * 109.46593 * 119.99672 * 2 1 3 35 35 H 1.08002 * 119.88178 * 359.96980 * 5 4 3 36 36 H 1.08002 * 119.89949 * 180.02562 * 6 5 4 37 37 H 1.07994 * 120.01620 * 180.25693 * 7 6 5 38 38 H 0.97003 * 119.99644 * 0.02562 * 11 9 8 39 39 H 1.09006 * 110.01763 * 240.74745 * 13 12 11 40 40 H 1.09004 * 110.01847 * 2.13391 * 13 12 11 41 41 H 1.09004 * 110.49680 * 143.60841 * 14 13 12 42 42 H 1.08999 * 110.49317 * 266.13860 * 14 13 12 43 43 H 1.08999 * 110.66930 * 203.76032 * 15 14 13 44 44 H 1.09002 * 110.66893 * 80.62417 * 15 14 13 45 45 H 0.97005 * 120.00028 * 179.97438 * 22 21 19 46 46 H 1.08991 * 110.37227 * 265.85470 * 27 18 16 47 47 H 1.09000 * 110.36739 * 143.52216 * 27 18 16 48 48 H 1.09003 * 110.97031 * 81.04641 * 28 27 18 49 49 H 1.09001 * 110.97012 * 204.80383 * 28 27 18 50 50 H 1.07994 * 120.10546 * 0.04664 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1993 0.4239 0.0005 6 6 5.5706 0.5990 0.0005 7 6 6.1084 1.8700 -0.0045 8 6 5.2664 2.9831 0.0014 9 6 5.8389 4.3463 0.0018 10 8 5.1038 5.3142 0.0019 11 7 7.1761 4.5157 0.0023 12 6 7.7434 5.8664 0.0022 13 6 7.3725 6.6642 1.2611 14 6 8.6991 7.0635 1.9387 15 6 9.7288 7.0650 0.7834 16 6 9.2925 5.8575 -0.0809 17 1 9.7134 4.9159 0.2714 18 7 9.6512 6.1263 -1.4807 19 6 10.9255 6.2407 -1.9688 20 1 11.7602 6.3135 -1.2873 21 6 11.1443 6.2632 -3.3393 22 7 10.1613 5.9802 -4.1675 23 14 12.8341 6.6953 -4.0084 24 1 13.6038 5.4489 -4.2514 25 1 12.6855 7.4419 -5.2835 26 1 13.5561 7.5387 -3.0221 27 6 8.4150 6.2523 -2.2730 28 6 7.3315 6.6778 -1.2515 29 6 3.8826 2.8049 0.0000 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7841 -0.5731 0.0005 36 1 6.2232 -0.2616 0.0000 37 1 7.1801 2.0031 -0.0086 38 1 7.7628 3.7432 0.0019 39 1 6.8110 7.5569 0.9852 40 1 6.7810 6.0443 1.9349 41 1 8.6186 8.0572 2.3794 42 1 8.9752 6.3317 2.6978 43 1 10.7383 6.9183 1.1676 44 1 9.6643 7.9908 0.2117 45 1 10.3142 5.9962 -5.1253 46 1 8.1550 5.2954 -2.7254 47 1 8.5331 7.0166 -3.0412 48 1 7.3790 7.7490 -1.0559 49 1 6.3377 6.3890 -1.5939 50 1 3.2261 3.6624 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992301410.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:09 Heat of formation + Delta-G solvation = -22.535328 kcal Electronic energy + Delta-G solvation = -30589.421182 eV Core-core repulsion = 26582.334586 eV Total energy + Delta-G solvation = -4007.086596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.63968 -39.93333 -38.37908 -37.08041 -34.23756 -33.51548 -32.29827 -31.61655 -31.13323 -29.94287 -29.31981 -26.71801 -26.15574 -24.65059 -23.81180 -22.88667 -22.56289 -20.99011 -20.00805 -19.77305 -18.82467 -18.40865 -16.98268 -16.65875 -16.40584 -16.14496 -16.06077 -15.28951 -14.95027 -14.69062 -14.58492 -14.07695 -13.84357 -13.59298 -13.58201 -13.47836 -13.16430 -12.92852 -12.80804 -12.29923 -12.19321 -12.14244 -11.89355 -11.79773 -11.67072 -11.19478 -11.10926 -11.04933 -11.03171 -10.75597 -10.66159 -10.52118 -10.17697 -10.14654 -9.86828 -9.78377 -9.64067 -9.43159 -9.16623 -8.61602 -8.51918 -8.41501 -6.80206 -5.73943 -3.07662 0.74845 1.25566 2.83539 2.96392 3.38827 3.44587 3.46493 3.47446 3.84062 4.48470 4.50183 4.55460 4.59219 4.73820 4.81780 4.89346 4.91121 5.04460 5.13396 5.16495 5.29407 5.32716 5.41763 5.42157 5.51530 5.66543 5.66876 5.77433 5.81872 5.86917 5.99622 6.04527 6.09032 6.15321 6.18580 6.22469 6.28064 6.35755 6.42030 6.45492 6.53946 6.60273 6.78745 6.79633 6.99701 7.13955 7.17718 7.54502 7.63435 7.79218 7.83937 8.26137 8.48709 9.19292 9.81718 10.49296 11.38399 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015291 B = 0.002628 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.692956 B =10651.843709 C =11583.908399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.120 3.880 5 C -0.190 4.190 6 C -0.087 4.087 7 C -0.122 4.122 8 C -0.087 4.087 9 C 0.557 3.443 10 O -0.531 6.531 11 N -0.697 5.697 12 C 0.162 3.838 13 C -0.111 4.111 14 C -0.124 4.124 15 C -0.128 4.128 16 C 0.161 3.839 17 H 0.047 0.953 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.075 0.925 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.175 3.825 28 C -0.145 4.145 29 C -0.094 4.094 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.399 0.601 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.252 0.748 46 H 0.025 0.975 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.763 -12.084 11.411 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.075 3.925 5 C -0.209 4.209 6 C -0.105 4.105 7 C -0.141 4.141 8 C -0.091 4.091 9 C 0.344 3.656 10 O -0.409 6.409 11 N -0.347 5.347 12 C 0.075 3.925 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.168 4.168 16 C 0.053 3.947 17 H 0.064 0.936 18 N -0.319 5.319 19 C -0.356 4.356 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.050 3.950 28 C -0.184 4.184 29 C -0.114 4.114 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.235 0.765 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.327 -11.226 11.162 21.352 hybrid contribution 1.300 -0.620 -0.534 1.536 sum -13.027 -11.846 10.628 20.567 Atomic orbital electron populations 1.21779 0.92676 1.02822 1.03695 1.22793 0.95980 0.81989 1.01370 1.86098 1.18759 1.29239 1.88768 1.18803 0.82488 0.93764 0.97472 1.21389 0.94458 0.98036 1.06971 1.20878 0.94279 0.97231 0.98075 1.21294 0.99886 0.91967 1.00961 1.19831 0.93227 0.93551 1.02459 1.18088 0.82510 0.88197 0.76844 1.90752 1.59567 1.41071 1.49505 1.45804 1.05960 1.09072 1.73829 1.21634 0.93836 0.81128 0.95863 1.22272 0.97138 0.99811 0.95804 1.22359 0.95485 1.00484 0.97908 1.22917 0.97522 1.00504 0.95901 1.21796 0.89428 0.95552 0.87917 0.93576 1.44509 1.02463 1.83123 1.01764 1.18960 0.82940 1.43391 0.90274 0.90692 1.24834 0.97550 1.01761 0.96143 1.69976 1.30691 1.53500 1.01986 0.86173 0.83577 0.77962 0.78443 1.21716 1.21688 1.20600 1.21397 0.82606 0.99198 0.91776 1.23345 1.00368 0.98687 0.96009 1.20458 0.94117 0.95439 1.01347 0.91397 0.90381 0.91453 0.91969 0.92037 0.85291 0.85110 0.85191 0.76497 0.91086 0.92266 0.92224 0.92310 0.92299 0.90739 0.93745 0.95692 0.91534 0.91348 0.91099 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.39 5.46 37.16 0.20 0.60 16 3 O -0.31 -3.53 10.13 -19.45 -0.20 -3.73 16 4 C 0.12 1.44 6.68 -39.28 -0.26 1.18 16 5 C -0.19 -1.89 9.03 -39.35 -0.36 -2.24 16 6 C -0.09 -0.86 10.03 -39.66 -0.40 -1.26 16 7 C -0.12 -1.44 9.54 -39.17 -0.37 -1.81 16 8 C -0.09 -1.24 5.87 -104.99 -0.62 -1.86 16 9 C 0.56 9.30 7.00 -12.32 -0.09 9.21 16 10 O -0.53 -10.29 14.20 5.33 0.08 -10.21 16 11 N -0.70 -11.36 5.19 -46.28 -0.24 -11.60 16 12 C 0.16 2.92 0.74 -129.38 -0.10 2.82 16 13 C -0.11 -1.81 5.34 -25.79 -0.14 -1.95 16 14 C -0.12 -1.83 6.84 -25.17 -0.17 -2.01 16 15 C -0.13 -2.28 6.21 -24.87 -0.15 -2.43 16 16 C 0.16 3.19 3.67 -65.60 -0.24 2.95 16 17 H 0.05 0.90 7.96 -51.93 -0.41 0.49 16 18 N -0.59 -14.55 3.03 -161.13 -0.49 -15.04 16 19 C -0.23 -6.11 9.96 -15.06 -0.15 -6.26 16 20 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 21 C -0.01 -0.16 5.39 -17.43 -0.09 -0.26 16 22 N -0.92 -26.67 10.74 55.49 0.60 -26.07 16 23 Si 0.91 21.81 29.57 -169.99 -5.03 16.79 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.17 4.28 5.41 -2.58 -0.01 4.27 16 28 C -0.14 -2.98 5.72 -24.74 -0.14 -3.12 16 29 C -0.09 -1.30 9.53 -39.02 -0.37 -1.68 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 35 H 0.13 0.94 6.28 -52.49 -0.33 0.61 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.35 6.40 -52.49 -0.34 1.02 16 38 H 0.40 5.80 6.51 -40.82 -0.27 5.53 16 39 H 0.07 1.19 7.37 -51.93 -0.38 0.80 16 40 H 0.06 0.95 7.66 -51.93 -0.40 0.55 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 47 H 0.07 1.82 6.99 -51.93 -0.36 1.46 16 48 H 0.07 1.38 7.62 -51.93 -0.40 0.98 16 49 H 0.07 1.50 6.53 -51.93 -0.34 1.16 16 50 H 0.14 2.08 7.65 -52.49 -0.40 1.68 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -31.88 392.36 -10.21 -42.09 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.76 Total: 6.19 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -3.08 Total: -4.34 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.13 Total: -52.71 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.12 Total: -13.94 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.88 -10.21 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992301410.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.557 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds