Wall clock time and date at job start Wed Apr 1 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42903 * 109.47141 * 2 1 4 4 C 1.35907 * 116.99935 * 179.97438 * 3 2 1 5 5 C 1.38853 * 119.98417 * 0.02725 * 4 3 2 6 6 C 1.38243 * 120.23849 * 179.97438 * 5 4 3 7 7 C 1.38014 * 120.20790 * 359.75825 * 6 5 4 8 8 C 1.39565 * 119.95856 * 0.51548 * 7 6 5 9 9 C 1.47859 * 120.11424 * 179.74217 * 8 7 6 10 10 O 1.21545 * 120.00264 * 179.72732 * 9 8 7 11 11 N 1.34788 * 119.99911 * 359.72224 * 9 8 7 12 12 C 1.46499 * 119.99803 * 179.97438 * 11 9 8 13 13 C 1.53586 * 112.66831 * 62.68894 * 12 11 9 14 14 C 1.54216 * 106.67636 * 121.44429 * 13 12 11 15 15 C 1.54758 * 104.15857 * 24.93808 * 14 13 12 16 16 C 1.54771 * 103.21249 * 322.19045 * 15 14 13 17 17 H 1.08995 * 112.62085 * 274.66063 * 16 15 14 18 18 N 1.46982 * 108.68772 * 150.20058 * 16 15 14 19 19 C 1.36931 * 125.58122 * 65.87191 * 18 16 15 20 20 H 1.08003 * 119.99707 * 348.76495 * 19 18 16 21 21 C 1.38809 * 120.00113 * 168.76866 * 19 18 16 22 22 N 1.31616 * 120.00194 * 350.06574 * 21 19 18 23 23 Si 1.86808 * 119.99959 * 170.06331 * 21 19 18 24 24 H 1.48494 * 109.47076 * 94.43000 * 23 21 19 25 25 H 1.48506 * 109.46952 * 214.42773 * 23 21 19 26 26 H 1.48503 * 109.46974 * 334.42593 * 23 21 19 27 27 C 1.47372 * 108.84121 * 245.87036 * 18 16 15 28 28 C 1.54870 * 104.81921 * 24.69104 * 27 18 16 29 29 C 1.38452 * 119.98420 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.46731 * 60.00091 * 1 2 3 31 31 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46889 * 300.00340 * 1 2 3 33 33 H 1.08995 * 109.46889 * 239.99660 * 2 1 3 34 34 H 1.08996 * 109.46593 * 119.99672 * 2 1 3 35 35 H 1.08002 * 119.88178 * 359.96980 * 5 4 3 36 36 H 1.08002 * 119.89949 * 180.02562 * 6 5 4 37 37 H 1.07994 * 120.01620 * 180.25693 * 7 6 5 38 38 H 0.97003 * 119.99644 * 0.02562 * 11 9 8 39 39 H 1.09006 * 110.01763 * 240.74745 * 13 12 11 40 40 H 1.09004 * 110.01847 * 2.13391 * 13 12 11 41 41 H 1.09004 * 110.49680 * 143.60841 * 14 13 12 42 42 H 1.08999 * 110.49317 * 266.13860 * 14 13 12 43 43 H 1.08999 * 110.66930 * 203.76032 * 15 14 13 44 44 H 1.09002 * 110.66893 * 80.62417 * 15 14 13 45 45 H 0.97005 * 120.00028 * 179.97438 * 22 21 19 46 46 H 1.08991 * 110.37227 * 265.85470 * 27 18 16 47 47 H 1.09000 * 110.36739 * 143.52216 * 27 18 16 48 48 H 1.09003 * 110.97031 * 81.04641 * 28 27 18 49 49 H 1.09001 * 110.97012 * 204.80383 * 28 27 18 50 50 H 1.07994 * 120.10546 * 0.04664 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 4.1993 0.4239 0.0005 6 6 5.5706 0.5990 0.0005 7 6 6.1084 1.8700 -0.0045 8 6 5.2664 2.9831 0.0014 9 6 5.8389 4.3463 0.0018 10 8 5.1038 5.3142 0.0019 11 7 7.1761 4.5157 0.0023 12 6 7.7434 5.8664 0.0022 13 6 7.3725 6.6642 1.2611 14 6 8.6991 7.0635 1.9387 15 6 9.7288 7.0650 0.7834 16 6 9.2925 5.8575 -0.0809 17 1 9.7134 4.9159 0.2714 18 7 9.6512 6.1263 -1.4807 19 6 10.9255 6.2407 -1.9688 20 1 11.7602 6.3135 -1.2873 21 6 11.1443 6.2632 -3.3393 22 7 10.1613 5.9802 -4.1675 23 14 12.8341 6.6953 -4.0084 24 1 13.6038 5.4489 -4.2514 25 1 12.6855 7.4419 -5.2835 26 1 13.5561 7.5387 -3.0221 27 6 8.4150 6.2523 -2.2730 28 6 7.3315 6.6778 -1.2515 29 6 3.8826 2.8049 0.0000 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7841 -0.5731 0.0005 36 1 6.2232 -0.2616 0.0000 37 1 7.1801 2.0031 -0.0086 38 1 7.7628 3.7432 0.0019 39 1 6.8110 7.5569 0.9852 40 1 6.7810 6.0443 1.9349 41 1 8.6186 8.0572 2.3794 42 1 8.9752 6.3317 2.6978 43 1 10.7383 6.9183 1.1676 44 1 9.6643 7.9908 0.2117 45 1 10.3142 5.9962 -5.1253 46 1 8.1550 5.2954 -2.7254 47 1 8.5331 7.0166 -3.0412 48 1 7.3790 7.7490 -1.0559 49 1 6.3377 6.3890 -1.5939 50 1 3.2261 3.6624 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992301410.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:08 Heat of formation + Delta-G solvation = -41.251385 kcal Electronic energy + Delta-G solvation = -30590.232771 eV Core-core repulsion = 26582.334586 eV Total energy + Delta-G solvation = -4007.898185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.85055 -41.03219 -39.67650 -38.09755 -36.03182 -34.86918 -33.42096 -32.90490 -32.31082 -31.34664 -30.39454 -28.42159 -27.63657 -25.73965 -25.51015 -23.79584 -23.44447 -22.43896 -21.55913 -21.02352 -20.26080 -19.53105 -18.84775 -17.73430 -17.36275 -17.06654 -17.04335 -16.85900 -16.36652 -16.19833 -15.81250 -15.66348 -15.10425 -14.81213 -14.70017 -14.51728 -14.38287 -14.25386 -13.89230 -13.55988 -13.39189 -13.26531 -13.08174 -12.92996 -12.90825 -12.81636 -12.62048 -12.57623 -12.31961 -12.03977 -11.90731 -11.88572 -11.73134 -11.66479 -11.65277 -11.48491 -11.25113 -10.86915 -10.65442 -10.17262 -9.92881 -9.29761 -8.82786 -7.84385 -5.19525 -0.23365 0.36633 1.47288 1.49125 1.58255 1.81856 1.93915 2.35111 2.51733 2.81512 3.33900 3.35036 3.63235 3.65928 3.76988 3.93704 3.95338 4.02014 4.07767 4.11868 4.15395 4.31111 4.35875 4.38103 4.40563 4.45851 4.49105 4.59383 4.63908 4.79385 4.80973 4.87768 4.92483 4.94921 4.95136 5.10017 5.14415 5.16462 5.22876 5.24876 5.29309 5.33383 5.34276 5.46556 5.53828 5.60461 5.62496 5.67889 5.73575 6.21361 6.39989 6.53313 7.09186 7.18480 7.78767 8.46151 9.27518 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015291 B = 0.002628 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.692956 B =10651.843709 C =11583.908399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.115 3.885 5 C -0.177 4.177 6 C -0.079 4.079 7 C -0.125 4.125 8 C -0.107 4.107 9 C 0.556 3.444 10 O -0.566 6.566 11 N -0.693 5.693 12 C 0.170 3.830 13 C -0.106 4.106 14 C -0.109 4.109 15 C -0.123 4.123 16 C 0.154 3.846 17 H 0.058 0.942 18 N -0.609 5.609 19 C -0.228 4.228 20 H 0.085 0.915 21 C -0.067 4.067 22 N -0.950 5.950 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.267 1.267 27 C 0.190 3.810 28 C -0.133 4.133 29 C -0.117 4.117 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.142 0.858 38 H 0.408 0.592 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.245 0.755 46 H -0.007 1.007 47 H 0.028 0.972 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.118 -14.370 13.708 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 O -0.250 6.250 4 C 0.069 3.931 5 C -0.196 4.196 6 C -0.097 4.097 7 C -0.144 4.144 8 C -0.110 4.110 9 C 0.344 3.656 10 O -0.446 6.446 11 N -0.344 5.344 12 C 0.083 3.917 13 C -0.145 4.145 14 C -0.147 4.147 15 C -0.163 4.163 16 C 0.047 3.953 17 H 0.075 0.925 18 N -0.334 5.334 19 C -0.357 4.357 20 H 0.103 0.897 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.227 1.227 26 H -0.191 1.191 27 C 0.064 3.936 28 C -0.173 4.173 29 C -0.137 4.137 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.160 0.840 38 H 0.246 0.754 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.011 0.989 47 H 0.046 0.954 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.673 -13.533 13.512 23.509 hybrid contribution 1.003 -0.007 -1.244 1.598 sum -12.670 -13.541 12.268 22.235 Atomic orbital electron populations 1.21824 0.91767 1.04261 1.03002 1.23148 0.96814 0.80407 1.02769 1.86090 1.18382 1.31886 1.88653 1.18861 0.83308 0.93573 0.97324 1.21782 0.94294 0.98823 1.04673 1.21300 0.94800 0.97420 0.96151 1.21499 1.00239 0.92091 1.00578 1.19644 0.93623 0.92731 1.05016 1.18520 0.82195 0.89102 0.75740 1.90722 1.60255 1.42486 1.51148 1.45733 1.06186 1.08707 1.73767 1.21506 0.92785 0.81964 0.95465 1.22216 0.98204 0.99224 0.94832 1.22299 0.92902 1.02459 0.96991 1.22781 0.99076 0.98121 0.96325 1.22062 0.90578 0.96942 0.85675 0.92484 1.44698 1.01726 1.83240 1.03724 1.19348 0.84124 1.41715 0.90556 0.89733 1.25646 1.01008 1.02662 0.96656 1.70181 1.32694 1.55384 1.01647 0.85140 0.79617 0.77623 0.77396 1.21378 1.22668 1.19148 1.21028 0.84284 0.96334 0.91945 1.23167 0.98361 0.99311 0.96416 1.20399 0.93995 0.96068 1.03260 0.92279 0.87824 0.92001 0.90689 0.90297 0.81913 0.81542 0.84031 0.75410 0.91751 0.91644 0.90146 0.89944 0.91271 0.92874 0.94584 0.98876 0.95376 0.91064 0.92054 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.04 0.53 5.46 71.98 0.39 0.92 16 3 O -0.34 -7.30 10.13 -92.50 -0.94 -8.24 16 4 C 0.11 2.66 6.68 22.47 0.15 2.81 16 5 C -0.18 -3.00 9.03 22.42 0.20 -2.79 16 6 C -0.08 -1.32 10.03 22.22 0.22 -1.09 16 7 C -0.13 -2.75 9.54 22.54 0.21 -2.54 16 8 C -0.11 -3.06 5.87 -20.10 -0.12 -3.18 16 9 C 0.56 19.02 7.00 86.79 0.61 19.63 16 10 O -0.57 -22.84 14.20 -3.86 -0.05 -22.89 16 11 N -0.69 -22.62 5.19 -418.60 -2.17 -24.79 16 12 C 0.17 6.10 0.74 5.19 0.00 6.11 16 13 C -0.11 -3.29 5.34 31.20 0.17 -3.13 16 14 C -0.11 -2.88 6.84 31.61 0.22 -2.66 16 15 C -0.12 -4.15 6.21 31.80 0.20 -3.95 16 16 C 0.15 5.98 3.67 46.24 0.17 6.15 16 17 H 0.06 2.13 7.96 -2.39 -0.02 2.11 16 18 N -0.61 -30.35 3.03 -663.71 -2.01 -32.36 16 19 C -0.23 -12.36 9.96 84.03 0.84 -11.52 16 20 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 21 C -0.07 -3.75 5.39 84.86 0.46 -3.30 16 22 N -0.95 -57.63 10.74 21.65 0.23 -57.40 16 23 Si 0.97 45.45 29.57 68.60 2.03 47.48 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.19 9.75 5.41 86.85 0.47 10.22 16 28 C -0.13 -5.69 5.72 31.89 0.18 -5.51 16 29 C -0.12 -3.37 9.53 22.63 0.22 -3.15 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.73 7.66 -2.39 -0.02 0.72 16 34 H 0.08 0.70 7.66 -2.39 -0.02 0.68 16 35 H 0.16 1.61 6.28 -2.91 -0.02 1.60 16 36 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.14 2.68 6.40 -2.91 -0.02 2.67 16 38 H 0.41 11.61 6.51 -92.71 -0.60 11.01 16 39 H 0.06 2.10 7.37 -2.38 -0.02 2.08 16 40 H 0.06 1.98 7.66 -2.38 -0.02 1.96 16 41 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 2.02 8.09 -2.39 -0.02 2.00 16 45 H 0.24 14.55 8.31 -92.70 -0.77 13.78 16 46 H -0.01 -0.38 8.06 -2.39 -0.02 -0.40 16 47 H 0.03 1.63 6.99 -2.39 -0.02 1.62 16 48 H 0.07 2.97 7.62 -2.39 -0.02 2.95 16 49 H 0.06 2.73 6.53 -2.39 -0.02 2.72 16 50 H 0.12 3.89 7.65 -2.91 -0.02 3.86 16 Total: -1.00 -72.88 392.36 2.76 -70.12 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.34 Total: 25.80 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.33 Total: 2.28 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -3.95 Total: -114.55 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.99 Total: -31.13 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -72.88 2.76 -70.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992301410.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.867 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds