Wall clock time and date at job start Wed Apr 1 2020 03:01:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42904 * 109.47202 * 2 1
4 4 C 1.35704 * 116.99833 * 179.97438 * 3 2 1
5 5 C 1.38995 * 119.90997 * 179.97438 * 4 3 2
6 6 C 1.37706 * 120.08762 * 180.02562 * 5 4 3
7 7 C 1.39728 * 119.91276 * 359.97438 * 6 5 4
8 8 C 1.47606 * 120.09072 * 180.02562 * 7 6 5
9 9 O 1.21580 * 119.99576 * 359.97438 * 8 7 6
10 10 N 1.34770 * 120.00183 * 180.02562 * 8 7 6
11 11 C 1.46497 * 120.00081 * 179.97438 * 10 8 7
12 12 C 1.51231 * 111.46603 * 291.88858 * 11 10 8
13 13 C 1.55685 * 104.60905 * 275.94291 * 12 11 10
14 14 C 1.56278 * 105.93764 * 352.75218 * 13 12 11
15 15 C 1.50520 * 101.75690 * 335.74031 * 14 13 12
16 16 H 1.08998 * 107.74706 * 293.22513 * 15 14 13
17 17 N 1.42700 * 128.16518 * 161.32532 * 15 14 13
18 18 C 1.36939 * 127.10668 * 28.27150 * 17 15 14
19 19 H 1.08003 * 119.99653 * 352.75928 * 18 17 15
20 20 C 1.38808 * 120.00221 * 172.75481 * 18 17 15
21 21 N 1.31620 * 119.99998 * 5.71297 * 20 18 17
22 22 Si 1.86797 * 120.00044 * 185.70718 * 20 18 17
23 23 H 1.48497 * 109.47053 * 94.96556 * 22 20 18
24 24 H 1.48501 * 109.47506 * 214.96396 * 22 20 18
25 25 H 1.48501 * 109.47053 * 334.96583 * 22 20 18
26 26 C 1.49295 * 105.79363 * 208.27781 * 17 15 14
27 27 C 1.52137 * 111.09584 * 71.68782 * 11 10 8
28 28 C 1.39734 * 119.82380 * 0.27700 * 7 6 5
29 29 C 1.37702 * 119.90759 * 359.42718 * 28 7 6
30 30 H 1.09007 * 109.46974 * 300.00650 * 1 2 3
31 31 H 1.08998 * 109.46878 * 60.00116 * 1 2 3
32 32 H 1.08993 * 109.47421 * 180.02562 * 1 2 3
33 33 H 1.08994 * 109.47178 * 239.99614 * 2 1 3
34 34 H 1.09005 * 109.46969 * 119.99541 * 2 1 3
35 35 H 1.08001 * 119.95879 * 359.97438 * 5 4 3
36 36 H 1.08004 * 120.04167 * 180.02562 * 6 5 4
37 37 H 0.97006 * 120.00109 * 359.97438 * 10 8 7
38 38 H 1.09005 * 110.40952 * 34.72804 * 12 11 10
39 39 H 1.09010 * 110.40765 * 157.15713 * 12 11 10
40 40 H 1.09008 * 110.15872 * 233.63834 * 13 12 11
41 41 H 1.09003 * 110.22001 * 111.90021 * 13 12 11
42 42 H 1.09006 * 110.97589 * 217.62464 * 14 13 12
43 43 H 1.08998 * 111.00493 * 93.87166 * 14 13 12
44 44 H 0.97005 * 119.99904 * 179.97438 * 21 20 18
45 45 H 1.08993 * 110.05494 * 127.92437 * 26 17 15
46 46 H 1.09005 * 110.04636 * 249.34718 * 26 17 15
47 47 H 1.08995 * 111.15507 * 191.86063 * 27 11 10
48 48 H 1.09003 * 111.14612 * 316.08613 * 27 11 10
49 49 H 1.07999 * 120.04558 * 179.71519 * 28 7 6
50 50 H 1.08002 * 119.95235 * 180.27274 * 29 28 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.3518 1.5251 0.0005
5 6 3.8811 2.8103 0.0000
6 6 5.2457 2.9949 0.0000
7 6 6.0986 1.8881 0.0011
8 6 7.5619 2.0814 0.0017
9 8 8.0266 3.2049 0.0008
10 7 8.3828 1.0126 0.0022
11 6 9.8352 1.2045 0.0022
12 6 10.3152 1.7966 -1.3039
13 6 10.4753 0.5738 -2.2541
14 6 10.2502 -0.6922 -1.3659
15 6 10.5994 -0.1725 0.0029
16 1 11.6656 0.0541 0.0102
17 7 10.2540 -0.7275 1.2714
18 6 10.0217 -2.0456 1.5609
19 1 9.9784 -2.7738 0.7645
20 6 9.8420 -2.4458 2.8778
21 7 9.7826 -1.5462 3.8367
22 14 9.6845 -4.2611 3.2892
23 1 11.0132 -4.7974 3.6789
24 1 8.7318 -4.4327 4.4153
25 1 9.1833 -4.9963 2.1003
26 6 10.1979 0.4258 2.2178
27 6 10.3196 1.7189 1.3496
28 6 5.5625 0.5977 -0.0037
29 6 4.1968 0.4215 0.0025
30 1 -0.3633 0.5140 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 -1.0276 0.0005
33 1 1.8934 -0.5139 -0.8899
34 1 1.8934 -0.5138 0.8901
35 1 3.2212 3.6653 -0.0012
36 1 5.6562 3.9939 0.0001
37 1 8.0121 0.1162 0.0026
38 1 9.5755 2.4920 -1.7007
39 1 11.2731 2.2979 -1.1648
40 1 11.4779 0.5590 -2.6818
41 1 9.7293 0.6132 -3.0479
42 1 10.9213 -1.4994 -1.6596
43 1 9.2107 -1.0178 -1.4060
44 1 9.6566 -1.8258 4.7570
45 1 9.2490 0.4235 2.7540
46 1 11.0261 0.3700 2.9243
47 1 11.3537 2.0584 1.2923
48 1 9.6688 2.5081 1.7262
49 1 6.2184 -0.2603 -0.0075
50 1 3.7817 -0.5756 0.0032
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000992463885.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:27
Heat of formation + Delta-G solvation = -10.325178 kcal
Electronic energy + Delta-G solvation = -31150.874990 eV
Core-core repulsion = 27144.317866 eV
Total energy + Delta-G solvation = -4006.557124 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.67165 -40.09636 -38.42708 -36.87411 -34.43044 -33.18196 -32.26516 -31.72337
-30.95022 -30.21795 -29.24554 -26.94441 -25.81281 -24.37009 -24.04799 -23.40545
-21.97040 -20.65826 -20.41087 -19.61859 -18.74446 -18.46962 -17.39984 -16.48590
-16.35819 -16.12251 -15.57853 -14.94791 -14.83461 -14.56491 -14.34395 -14.10270
-13.93910 -13.73879 -13.63698 -13.45847 -13.31729 -12.93477 -12.59909 -12.36868
-12.32965 -12.04075 -11.93087 -11.85885 -11.41382 -11.35741 -11.03717 -10.94830
-10.93057 -10.87489 -10.79256 -10.49007 -10.29461 -10.03437 -9.97990 -9.70775
-9.58242 -9.13808 -9.11173 -8.68138 -8.51169 -8.21205 -6.87691 -5.79695
-3.13551 0.99236 1.30665 2.95161 3.13201 3.34448 3.39983 3.42286
3.65175 4.02333 4.41994 4.57392 4.62283 4.63023 4.73834 4.83801
4.95178 5.03999 5.14960 5.24082 5.25803 5.29017 5.39853 5.44819
5.46728 5.59138 5.62426 5.70339 5.73342 5.83755 5.91770 5.94555
5.98674 6.10640 6.16476 6.22799 6.26835 6.32789 6.38029 6.40116
6.45557 6.51631 6.61163 6.67380 6.82807 6.91182 7.20873 7.23289
7.54537 7.54964 7.74655 8.09053 8.16436 8.72619 9.09409 9.76167
10.46393 11.33353
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.008907 B = 0.003769 C = 0.002978
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3142.846646 B = 7427.508253 C = 9398.657295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.051 3.949
3 O -0.315 6.315
4 C 0.149 3.851
5 C -0.164 4.164
6 C -0.022 4.022
7 C -0.166 4.166
8 C 0.560 3.440
9 O -0.550 6.550
10 N -0.685 5.685
11 C 0.132 3.868
12 C -0.112 4.112
13 C -0.116 4.116
14 C -0.115 4.115
15 C 0.158 3.842
16 H 0.023 0.977
17 N -0.584 5.584
18 C -0.235 4.235
19 H 0.079 0.921
20 C -0.001 4.001
21 N -0.914 5.914
22 Si 0.907 3.093
23 H -0.289 1.289
24 H -0.292 1.292
25 H -0.281 1.281
26 C 0.180 3.820
27 C -0.139 4.139
28 C -0.040 4.040
29 C -0.216 4.216
30 H 0.066 0.934
31 H 0.065 0.935
32 H 0.078 0.922
33 H 0.064 0.936
34 H 0.065 0.935
35 H 0.134 0.866
36 H 0.142 0.858
37 H 0.401 0.599
38 H 0.070 0.930
39 H 0.070 0.930
40 H 0.062 0.938
41 H 0.058 0.942
42 H 0.064 0.936
43 H 0.063 0.937
44 H 0.253 0.747
45 H 0.057 0.943
46 H 0.039 0.961
47 H 0.065 0.935
48 H 0.068 0.932
49 H 0.132 0.868
50 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.384 4.540 -10.468 16.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.024 4.024
3 O -0.229 6.229
4 C 0.103 3.897
5 C -0.183 4.183
6 C -0.041 4.041
7 C -0.169 4.169
8 C 0.347 3.653
9 O -0.430 6.430
10 N -0.335 5.335
11 C 0.045 3.955
12 C -0.150 4.150
13 C -0.155 4.155
14 C -0.153 4.153
15 C 0.047 3.953
16 H 0.040 0.960
17 N -0.308 5.308
18 C -0.362 4.362
19 H 0.097 0.903
20 C -0.199 4.199
21 N -0.561 5.561
22 Si 0.738 3.262
23 H -0.216 1.216
24 H -0.218 1.218
25 H -0.207 1.207
26 C 0.057 3.943
27 C -0.178 4.178
28 C -0.058 4.058
29 C -0.235 4.235
30 H 0.085 0.915
31 H 0.084 0.916
32 H 0.097 0.903
33 H 0.082 0.918
34 H 0.083 0.917
35 H 0.152 0.848
36 H 0.160 0.840
37 H 0.238 0.762
38 H 0.088 0.912
39 H 0.089 0.911
40 H 0.080 0.920
41 H 0.077 0.923
42 H 0.083 0.917
43 H 0.081 0.919
44 H 0.063 0.937
45 H 0.076 0.924
46 H 0.057 0.943
47 H 0.084 0.916
48 H 0.087 0.913
49 H 0.150 0.850
50 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -12.226 5.279 -10.240 16.799
hybrid contribution -0.167 -1.797 0.464 1.864
sum -12.393 3.481 -9.776 16.164
Atomic orbital electron populations
1.21777 0.92698 1.02918 1.03484 1.22843 0.95891 0.81832 1.01818
1.86017 1.19143 1.29588 1.88118 1.19221 0.82152 0.94217 0.94138
1.20358 0.95006 0.94755 1.08175 1.21056 0.91386 0.99170 0.92530
1.20000 0.93833 0.93874 1.09205 1.18045 0.85784 0.84924 0.76538
1.90712 1.77390 1.23620 1.51257 1.45619 1.06005 1.08791 1.73116
1.21513 0.79793 1.00256 0.93982 1.21867 1.01296 0.97173 0.94693
1.22815 1.00929 0.94130 0.97586 1.21844 1.01315 0.96890 0.95283
1.20830 0.95988 0.90556 0.87906 0.95964 1.43667 1.81202 1.03364
1.02522 1.18998 1.42970 0.82194 0.92082 0.90344 1.24812 1.01850
0.97526 0.95684 1.69939 1.55229 1.31194 0.99717 0.86183 0.77470
0.84820 0.77748 1.21599 1.21830 1.20655 1.21969 1.01145 0.81115
0.90107 1.22794 1.00101 0.99576 0.95358 1.21213 0.94684 0.96605
0.93340 1.21163 0.94071 0.98221 1.10039 0.91487 0.91555 0.90306
0.91794 0.91654 0.84790 0.84046 0.76203 0.91157 0.91121 0.91952
0.92285 0.91745 0.91857 0.93653 0.92443 0.94262 0.91612 0.91340
0.84999 0.85030
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16
2 C 0.05 0.43 5.45 37.16 0.20 0.63 16
3 O -0.32 -3.58 10.12 -18.82 -0.19 -3.78 16
4 C 0.15 1.86 6.69 -39.02 -0.26 1.59 16
5 C -0.16 -2.04 9.97 -39.50 -0.39 -2.43 16
6 C -0.02 -0.31 9.58 -39.22 -0.38 -0.69 16
7 C -0.17 -2.56 5.87 -104.96 -0.62 -3.18 16
8 C 0.56 9.98 7.09 -12.44 -0.09 9.89 16
9 O -0.55 -10.99 14.49 5.30 0.08 -10.92 16
10 N -0.68 -12.18 4.34 -47.58 -0.21 -12.38 16
11 C 0.13 2.43 0.40 -130.70 -0.05 2.37 16
12 C -0.11 -1.78 6.04 -26.19 -0.16 -1.94 16
13 C -0.12 -1.64 6.93 -23.54 -0.16 -1.81 16
14 C -0.11 -1.88 6.46 -26.21 -0.17 -2.05 16
15 C 0.16 3.11 2.61 -68.72 -0.18 2.93 16
16 H 0.02 0.48 7.97 -51.93 -0.41 0.06 16
17 N -0.58 -13.93 3.12 -162.68 -0.51 -14.44 16
18 C -0.23 -6.10 10.28 -15.06 -0.15 -6.25 16
19 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16
20 C 0.00 -0.04 5.49 -17.43 -0.10 -0.14 16
21 N -0.91 -25.99 10.61 55.49 0.59 -25.40 16
22 Si 0.91 21.26 29.56 -169.99 -5.02 16.23 16
23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
26 C 0.18 4.31 5.29 -0.76 0.00 4.30 16
27 C -0.14 -2.80 6.21 -25.44 -0.16 -2.96 16
28 C -0.04 -0.55 9.53 -39.22 -0.37 -0.93 16
29 C -0.22 -2.68 9.01 -39.50 -0.36 -3.03 16
30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
33 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16
34 H 0.07 0.52 7.65 -51.93 -0.40 0.13 16
35 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16
36 H 0.14 1.89 7.64 -52.48 -0.40 1.48 16
37 H 0.40 7.09 5.83 -40.82 -0.24 6.85 16
38 H 0.07 1.18 6.86 -51.93 -0.36 0.82 16
39 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16
40 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16
41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
43 H 0.06 1.03 7.38 -51.93 -0.38 0.65 16
44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
45 H 0.06 1.53 7.32 -51.93 -0.38 1.15 16
46 H 0.04 1.03 7.82 -51.93 -0.41 0.62 16
47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
48 H 0.07 1.42 7.17 -51.93 -0.37 1.05 16
49 H 0.13 1.78 6.39 -52.49 -0.34 1.45 16
50 H 0.13 1.34 6.28 -52.49 -0.33 1.01 16
LS Contribution 392.09 15.07 5.91 5.91
Total: -1.00 -30.55 392.09 -10.13 -40.68
By element:
Atomic # 1 Polarization: 16.10 SS G_CDS: -7.76 Total: 8.34 kcal
Atomic # 6 Polarization: -1.23 SS G_CDS: -3.02 Total: -4.24 kcal
Atomic # 7 Polarization: -52.10 SS G_CDS: -0.13 Total: -52.22 kcal
Atomic # 8 Polarization: -14.58 SS G_CDS: -0.11 Total: -14.69 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -30.55 -10.13 -40.68 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992463885.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.358 kcal
(2) G-P(sol) polarization free energy of solvation -30.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds