Wall clock time and date at job start Wed Apr 1 2020 03:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00452 * 2 1 4 4 O 1.21283 * 120.00538 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99911 * 359.97438 * 3 2 1 6 6 C 1.50701 * 109.47459 * 180.02562 * 5 3 2 7 7 C 1.38294 * 120.00130 * 269.72443 * 6 5 3 8 8 C 1.37971 * 119.95273 * 179.85163 * 7 6 5 9 9 C 1.39150 * 120.21612 * 0.53016 * 8 7 6 10 10 C 1.38380 * 119.69332 * 359.59720 * 9 8 7 11 11 C 1.38098 * 120.00948 * 89.99843 * 6 5 3 12 12 C 1.50769 * 121.40749 * 180.32230 * 10 9 8 13 13 C 1.53071 * 109.67783 * 342.19911 * 12 10 9 14 14 C 1.53403 * 108.30263 * 48.19888 * 13 12 10 15 15 O 1.35841 * 118.50425 * 179.46134 * 9 8 7 16 16 C 1.46498 * 119.99816 * 180.02562 * 2 1 3 17 17 C 1.53788 * 113.61331 * 243.22076 * 16 2 1 18 18 C 1.53778 * 87.07778 * 89.11884 * 17 16 2 19 19 N 1.46507 * 113.61330 * 270.79773 * 18 17 16 20 20 C 1.36941 * 119.99947 * 202.17024 * 19 18 17 21 21 H 1.07998 * 119.99972 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99472 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99660 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47244 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47102 * 119.99959 * 24 22 20 27 27 H 1.48502 * 109.47168 * 240.00035 * 24 22 20 28 28 C 1.53776 * 87.17633 * 25.39094 * 18 17 16 29 29 H 1.09003 * 109.46988 * 268.86406 * 1 2 3 30 30 H 1.09004 * 109.47145 * 28.86099 * 1 2 3 31 31 H 1.08994 * 109.47037 * 148.86412 * 1 2 3 32 32 H 1.08998 * 109.47196 * 300.00318 * 5 3 2 33 33 H 1.08997 * 109.47092 * 60.00053 * 5 3 2 34 34 H 1.07992 * 120.02645 * 0.09712 * 7 6 5 35 35 H 1.07996 * 119.89726 * 180.25734 * 8 7 6 36 36 H 1.07998 * 119.84184 * 359.90142 * 11 6 5 37 37 H 1.09002 * 109.43540 * 102.25876 * 12 10 9 38 38 H 1.08994 * 109.43785 * 222.17842 * 12 10 9 39 39 H 1.09009 * 109.69751 * 167.89903 * 13 12 10 40 40 H 1.09006 * 109.69723 * 288.48824 * 13 12 10 41 41 H 1.08994 * 109.68749 * 55.00040 * 14 13 12 42 42 H 1.09008 * 109.68306 * 175.52519 * 14 13 12 43 43 H 1.09004 * 112.91084 * 111.96986 * 16 2 1 44 44 H 1.08995 * 113.61608 * 334.56796 * 17 16 2 45 45 H 1.08999 * 113.61595 * 203.66389 * 17 16 2 46 46 H 1.09003 * 113.61531 * 139.98696 * 18 17 16 47 47 H 0.96994 * 119.99458 * 22.17360 * 19 18 17 48 48 H 0.97002 * 120.00448 * 180.02562 * 23 22 20 49 49 H 1.08996 * 113.61613 * 89.16073 * 28 18 17 50 50 H 1.09007 * 113.61550 * 220.06315 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3648 3.6177 -0.0011 7 6 2.8098 4.1476 1.1963 8 6 3.7087 5.1943 1.1947 9 6 4.1615 5.7267 -0.0086 10 6 3.7124 5.1960 -1.2051 11 6 2.8137 4.1421 -1.1972 12 6 4.1830 5.7382 -2.5309 13 6 4.7926 7.1281 -2.3322 14 6 5.7755 7.0595 -1.1564 15 8 5.0377 6.7640 0.0304 16 6 2.1974 -1.2687 -0.0006 17 6 3.0553 -1.4854 1.2573 18 6 1.8171 -2.1392 1.8932 19 7 0.9459 -1.1905 2.5914 20 6 0.0889 -1.6350 3.5626 21 1 0.0556 -2.6847 3.8142 22 6 -0.7369 -0.7362 4.2236 23 7 -0.6967 0.5430 3.9166 24 14 -1.9055 -1.3423 5.5491 25 1 -1.7585 -2.8118 5.7043 26 1 -1.5837 -0.6744 6.8358 27 1 -3.3028 -1.0223 5.1612 28 6 1.3511 -2.4675 0.4650 29 1 -0.3633 -0.0204 1.0275 30 1 -0.3633 0.9000 -0.4961 31 1 -0.3633 -0.8796 -0.5313 32 1 0.7592 2.5298 -0.8908 33 1 0.7585 2.5303 0.8891 34 1 2.4570 3.7398 2.1320 35 1 4.0588 5.6046 2.1303 36 1 2.4624 3.7284 -2.1309 37 1 4.9344 5.0691 -2.9502 38 1 3.3373 5.8082 -3.2149 39 1 5.3218 7.4298 -3.2362 40 1 4.0039 7.8470 -2.1104 41 1 6.5099 6.2747 -1.3370 42 1 6.2823 8.0181 -1.0451 43 1 2.7349 -1.4480 -0.9318 44 1 3.3582 -0.5585 1.7442 45 1 3.8848 -2.1761 1.1065 46 1 2.0475 -3.0211 2.4910 47 1 0.9761 -0.2477 2.3655 48 1 -1.2736 1.1712 4.3788 49 1 1.7138 -3.4273 0.0972 50 1 0.2802 -2.3323 0.3132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998943525.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:13 Heat of formation + Delta-G solvation = -8.439597 kcal Electronic energy + Delta-G solvation = -30780.950856 eV Core-core repulsion = 26774.475497 eV Total energy + Delta-G solvation = -4006.475359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70509 -40.03231 -38.16160 -37.05675 -34.39385 -34.10557 -33.23130 -32.01406 -30.42234 -29.93663 -27.70489 -26.70113 -25.57099 -24.88736 -24.07520 -23.45300 -22.71282 -22.09158 -20.03834 -19.11015 -17.80918 -17.72829 -17.43692 -16.70617 -16.35534 -16.01897 -15.60492 -15.28647 -14.85486 -14.63914 -14.49087 -14.23979 -13.98523 -13.72912 -13.62782 -13.30312 -13.18815 -13.00043 -12.87526 -12.44586 -12.33871 -12.20832 -11.74431 -11.71438 -11.50774 -11.35462 -11.33760 -11.17349 -11.00991 -10.90445 -10.78072 -10.74261 -10.43656 -10.22797 -10.08276 -9.77880 -9.58488 -9.18940 -8.91180 -8.64546 -8.00252 -7.92301 -7.01228 -5.84670 -3.12211 1.46963 1.52125 3.12986 3.24471 3.38790 3.45277 3.46612 3.47258 3.90499 4.45010 4.52983 4.53685 4.60921 4.82418 4.93667 4.97180 5.03778 5.18608 5.26184 5.28345 5.32629 5.38393 5.42439 5.48315 5.50627 5.54428 5.60636 5.66748 5.72824 5.79591 5.84313 5.85983 5.91069 5.98542 6.03536 6.19946 6.20414 6.35772 6.38084 6.48982 6.49807 6.68743 6.74387 6.78219 6.81096 6.90960 6.93285 7.20583 7.48829 7.67641 7.90262 8.35765 8.69407 9.47043 10.04566 10.41450 11.37711 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.002800 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.112475 B = 9998.412251 C =11058.742544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.588 5.588 3 C 0.519 3.481 4 O -0.541 6.541 5 C -0.100 4.100 6 C -0.084 4.084 7 C -0.067 4.067 8 C -0.145 4.145 9 C 0.123 3.877 10 C -0.163 4.163 11 C -0.072 4.072 12 C -0.076 4.076 13 C -0.159 4.159 14 C 0.061 3.939 15 O -0.319 6.319 16 C 0.131 3.869 17 C -0.161 4.161 18 C 0.166 3.834 19 N -0.704 5.704 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.183 4.183 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.388 0.612 48 H 0.255 0.745 49 H 0.078 0.922 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 9.332 -14.606 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.321 5.321 3 C 0.307 3.693 4 O -0.418 6.418 5 C -0.140 4.140 6 C -0.085 4.085 7 C -0.085 4.085 8 C -0.164 4.164 9 C 0.079 3.921 10 C -0.164 4.164 11 C -0.091 4.091 12 C -0.113 4.113 13 C -0.197 4.197 14 C -0.014 4.014 15 O -0.233 6.233 16 C 0.027 3.973 17 C -0.201 4.201 18 C 0.053 3.947 19 N -0.344 5.344 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.224 4.224 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.224 0.776 48 H 0.065 0.935 49 H 0.097 0.903 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.821 9.368 -14.292 18.794 hybrid contribution -0.759 -0.153 0.371 0.859 sum 7.062 9.215 -13.922 18.127 Atomic orbital electron populations 1.22113 0.78965 1.01243 1.05284 1.47471 1.07098 1.04830 1.72740 1.20373 0.87890 0.84788 0.76259 1.90667 1.13845 1.87398 1.49887 1.20692 0.97495 0.90387 1.05424 1.19198 0.99280 0.96832 0.93143 1.20904 0.95103 0.94296 0.98231 1.20530 1.01224 0.98482 0.96158 1.18627 0.91471 0.88613 0.93393 1.19640 1.02399 1.00484 0.93905 1.20644 0.96083 0.94803 0.97530 1.20430 1.00936 0.95616 0.94274 1.22227 1.00034 0.98086 0.99304 1.22916 0.92999 1.01761 0.83750 1.85977 1.52799 1.47326 1.37218 1.21751 0.94397 0.83780 0.97366 1.23700 0.97670 1.01795 0.96940 1.21141 0.89810 0.93264 0.90449 1.42336 1.43654 1.06307 1.42099 1.19346 1.13068 0.93333 1.11306 0.91058 1.24703 1.00389 0.95424 1.00232 1.69636 1.42408 1.01060 1.44870 0.86128 0.80652 0.77747 0.81696 1.20647 1.21932 1.21899 1.24230 1.00582 0.95668 1.01923 0.88362 0.92225 0.91668 0.88656 0.86982 0.84978 0.85366 0.86310 0.90667 0.90243 0.89998 0.90499 0.91953 0.87815 0.91524 0.90765 0.90098 0.92173 0.77621 0.93503 0.90334 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 8.65 59.85 0.52 1.59 16 2 N -0.59 -10.15 2.08 -172.89 -0.36 -10.51 16 3 C 0.52 9.33 7.36 -10.99 -0.08 9.25 16 4 O -0.54 -11.31 14.99 5.56 0.08 -11.22 16 5 C -0.10 -1.51 4.37 -29.03 -0.13 -1.63 16 6 C -0.08 -1.29 4.37 -104.65 -0.46 -1.74 16 7 C -0.07 -1.06 9.70 -39.66 -0.38 -1.44 16 8 C -0.15 -2.17 9.94 -39.34 -0.39 -2.56 16 9 C 0.12 1.77 6.47 -39.19 -0.25 1.52 16 10 C -0.16 -2.17 5.75 -104.44 -0.60 -2.77 16 11 C -0.07 -1.01 9.32 -39.53 -0.37 -1.38 16 12 C -0.08 -0.74 5.86 -27.81 -0.16 -0.90 16 13 C -0.16 -1.28 6.19 -26.49 -0.16 -1.44 16 14 C 0.06 0.56 7.03 37.37 0.26 0.82 16 15 O -0.32 -4.17 10.27 -19.24 -0.20 -4.37 16 16 C 0.13 2.24 4.13 -67.02 -0.28 1.96 16 17 C -0.16 -2.99 7.13 -25.92 -0.18 -3.17 16 18 C 0.17 3.30 4.55 -67.12 -0.31 2.99 16 19 N -0.70 -16.81 4.07 -52.64 -0.21 -17.02 16 20 C -0.24 -6.31 9.98 -15.06 -0.15 -6.46 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 24 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C -0.18 -3.04 7.17 -25.83 -0.19 -3.23 16 29 H 0.10 1.98 6.15 -51.93 -0.32 1.66 16 30 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 31 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 32 H 0.10 1.17 7.35 -51.93 -0.38 0.78 16 33 H 0.11 1.76 8.05 -51.93 -0.42 1.34 16 34 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.60 7.18 -51.93 -0.37 1.23 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 47 H 0.39 9.70 5.53 -40.82 -0.23 9.47 16 48 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.08 1.35 5.90 -51.93 -0.31 1.05 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -31.32 393.60 -10.20 -41.53 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -7.74 Total: 13.44 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -3.41 Total: -9.01 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.15 Total: -52.82 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.11 Total: -15.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.32 -10.20 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998943525.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.086 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds