Wall clock time and date at job start Wed Apr 1 2020 03:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00452 * 2 1 4 4 O 1.21283 * 120.00538 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99911 * 359.97438 * 3 2 1 6 6 C 1.50701 * 109.47459 * 180.02562 * 5 3 2 7 7 C 1.38294 * 120.00130 * 269.72443 * 6 5 3 8 8 C 1.37971 * 119.95273 * 179.85163 * 7 6 5 9 9 C 1.39150 * 120.21612 * 0.53016 * 8 7 6 10 10 C 1.38380 * 119.69332 * 359.59720 * 9 8 7 11 11 C 1.38098 * 120.00948 * 89.99843 * 6 5 3 12 12 C 1.50769 * 121.40749 * 180.32230 * 10 9 8 13 13 C 1.53071 * 109.67783 * 342.19911 * 12 10 9 14 14 C 1.53403 * 108.30263 * 48.19888 * 13 12 10 15 15 O 1.35841 * 118.50425 * 179.46134 * 9 8 7 16 16 C 1.46498 * 119.99816 * 180.02562 * 2 1 3 17 17 C 1.53788 * 113.61331 * 243.22076 * 16 2 1 18 18 C 1.53778 * 87.07778 * 89.11884 * 17 16 2 19 19 N 1.46507 * 113.61330 * 270.79773 * 18 17 16 20 20 C 1.36941 * 119.99947 * 202.17024 * 19 18 17 21 21 H 1.07998 * 119.99972 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99472 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99660 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47244 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47102 * 119.99959 * 24 22 20 27 27 H 1.48502 * 109.47168 * 240.00035 * 24 22 20 28 28 C 1.53776 * 87.17633 * 25.39094 * 18 17 16 29 29 H 1.09003 * 109.46988 * 268.86406 * 1 2 3 30 30 H 1.09004 * 109.47145 * 28.86099 * 1 2 3 31 31 H 1.08994 * 109.47037 * 148.86412 * 1 2 3 32 32 H 1.08998 * 109.47196 * 300.00318 * 5 3 2 33 33 H 1.08997 * 109.47092 * 60.00053 * 5 3 2 34 34 H 1.07992 * 120.02645 * 0.09712 * 7 6 5 35 35 H 1.07996 * 119.89726 * 180.25734 * 8 7 6 36 36 H 1.07998 * 119.84184 * 359.90142 * 11 6 5 37 37 H 1.09002 * 109.43540 * 102.25876 * 12 10 9 38 38 H 1.08994 * 109.43785 * 222.17842 * 12 10 9 39 39 H 1.09009 * 109.69751 * 167.89903 * 13 12 10 40 40 H 1.09006 * 109.69723 * 288.48824 * 13 12 10 41 41 H 1.08994 * 109.68749 * 55.00040 * 14 13 12 42 42 H 1.09008 * 109.68306 * 175.52519 * 14 13 12 43 43 H 1.09004 * 112.91084 * 111.96986 * 16 2 1 44 44 H 1.08995 * 113.61608 * 334.56796 * 17 16 2 45 45 H 1.08999 * 113.61595 * 203.66389 * 17 16 2 46 46 H 1.09003 * 113.61531 * 139.98696 * 18 17 16 47 47 H 0.96994 * 119.99458 * 22.17360 * 19 18 17 48 48 H 0.97002 * 120.00448 * 180.02562 * 23 22 20 49 49 H 1.08996 * 113.61613 * 89.16073 * 28 18 17 50 50 H 1.09007 * 113.61550 * 220.06315 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3648 3.6177 -0.0011 7 6 2.8098 4.1476 1.1963 8 6 3.7087 5.1943 1.1947 9 6 4.1615 5.7267 -0.0086 10 6 3.7124 5.1960 -1.2051 11 6 2.8137 4.1421 -1.1972 12 6 4.1830 5.7382 -2.5309 13 6 4.7926 7.1281 -2.3322 14 6 5.7755 7.0595 -1.1564 15 8 5.0377 6.7640 0.0304 16 6 2.1974 -1.2687 -0.0006 17 6 3.0553 -1.4854 1.2573 18 6 1.8171 -2.1392 1.8932 19 7 0.9459 -1.1905 2.5914 20 6 0.0889 -1.6350 3.5626 21 1 0.0556 -2.6847 3.8142 22 6 -0.7369 -0.7362 4.2236 23 7 -0.6967 0.5430 3.9166 24 14 -1.9055 -1.3423 5.5491 25 1 -1.7585 -2.8118 5.7043 26 1 -1.5837 -0.6744 6.8358 27 1 -3.3028 -1.0223 5.1612 28 6 1.3511 -2.4675 0.4650 29 1 -0.3633 -0.0204 1.0275 30 1 -0.3633 0.9000 -0.4961 31 1 -0.3633 -0.8796 -0.5313 32 1 0.7592 2.5298 -0.8908 33 1 0.7585 2.5303 0.8891 34 1 2.4570 3.7398 2.1320 35 1 4.0588 5.6046 2.1303 36 1 2.4624 3.7284 -2.1309 37 1 4.9344 5.0691 -2.9502 38 1 3.3373 5.8082 -3.2149 39 1 5.3218 7.4298 -3.2362 40 1 4.0039 7.8470 -2.1104 41 1 6.5099 6.2747 -1.3370 42 1 6.2823 8.0181 -1.0451 43 1 2.7349 -1.4480 -0.9318 44 1 3.3582 -0.5585 1.7442 45 1 3.8848 -2.1761 1.1065 46 1 2.0475 -3.0211 2.4910 47 1 0.9761 -0.2477 2.3655 48 1 -1.2736 1.1712 4.3788 49 1 1.7138 -3.4273 0.0972 50 1 0.2802 -2.3323 0.3132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998943525.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:12 Heat of formation + Delta-G solvation = -24.871124 kcal Electronic energy + Delta-G solvation = -30781.663381 eV Core-core repulsion = 26774.475497 eV Total energy + Delta-G solvation = -4007.187883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77521 -41.35042 -39.45926 -38.28980 -35.69831 -35.23126 -34.96886 -33.18295 -31.82335 -31.39589 -28.81856 -28.07117 -26.64543 -26.32674 -25.68638 -24.66521 -23.95395 -23.27701 -21.25371 -20.24257 -19.45919 -19.10513 -18.73116 -17.78640 -17.67420 -17.31054 -16.80126 -16.66873 -16.44122 -15.91892 -15.54655 -15.39802 -15.31710 -14.90012 -14.86657 -14.71236 -14.51562 -14.21797 -13.97309 -13.84709 -13.55635 -13.29155 -13.25851 -13.07478 -12.88970 -12.78322 -12.64291 -12.52308 -12.39813 -12.23600 -12.08355 -11.85854 -11.69306 -11.67641 -11.62631 -11.33751 -11.12372 -10.84164 -10.62006 -9.73025 -9.41930 -9.00730 -8.93829 -7.89752 -5.16869 0.36136 0.40090 1.48799 1.51021 1.59131 1.72860 2.12811 2.38153 2.58341 2.78141 3.41531 3.57618 3.65216 3.72474 3.79736 3.81760 3.88068 3.94961 3.97666 4.04136 4.22224 4.28777 4.30304 4.38028 4.39728 4.43736 4.47436 4.60535 4.63222 4.67424 4.74408 4.75307 4.86240 4.92426 4.93617 5.03981 5.05240 5.10040 5.12250 5.19042 5.26455 5.29518 5.32347 5.44676 5.45920 5.56941 5.66752 5.80731 5.84156 6.32967 6.50456 6.54070 7.30107 7.39709 8.14951 8.41662 9.32518 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014764 B = 0.002800 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.112475 B = 9998.412251 C =11058.742544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.589 5.589 3 C 0.514 3.486 4 O -0.575 6.575 5 C -0.092 4.092 6 C -0.099 4.099 7 C -0.090 4.090 8 C -0.161 4.161 9 C 0.115 3.885 10 C -0.165 4.165 11 C -0.076 4.076 12 C -0.078 4.078 13 C -0.153 4.153 14 C 0.049 3.951 15 O -0.335 6.335 16 C 0.129 3.871 17 C -0.156 4.156 18 C 0.146 3.854 19 N -0.715 5.715 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.065 4.065 23 N -0.958 5.958 24 Si 0.965 3.035 25 H -0.271 1.271 26 H -0.301 1.301 27 H -0.292 1.292 28 C -0.158 4.158 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.107 0.893 46 H 0.059 0.941 47 H 0.379 0.621 48 H 0.250 0.750 49 H 0.113 0.887 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.491 8.992 -17.388 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.321 5.321 3 C 0.303 3.697 4 O -0.455 6.455 5 C -0.131 4.131 6 C -0.099 4.099 7 C -0.108 4.108 8 C -0.180 4.180 9 C 0.070 3.930 10 C -0.166 4.166 11 C -0.094 4.094 12 C -0.114 4.114 13 C -0.190 4.190 14 C -0.026 4.026 15 O -0.250 6.250 16 C 0.026 3.974 17 C -0.196 4.196 18 C 0.035 3.965 19 N -0.355 5.355 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.258 4.258 23 N -0.608 5.608 24 Si 0.796 3.204 25 H -0.195 1.195 26 H -0.229 1.229 27 H -0.219 1.219 28 C -0.198 4.198 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.148 0.852 43 H 0.103 0.897 44 H 0.054 0.946 45 H 0.125 0.875 46 H 0.077 0.923 47 H 0.214 0.786 48 H 0.059 0.941 49 H 0.132 0.868 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.056 8.984 -17.098 20.927 hybrid contribution -0.701 -0.052 1.231 1.418 sum 7.355 8.932 -15.867 19.637 Atomic orbital electron populations 1.22045 0.78171 1.03537 1.03226 1.47580 1.07599 1.04861 1.72042 1.20854 0.87659 0.85753 0.75426 1.90639 1.15350 1.87954 1.51548 1.20649 0.97321 0.88915 1.06229 1.19311 0.99882 0.97171 0.93577 1.20892 0.96358 0.95385 0.98154 1.20654 1.01505 0.98721 0.97122 1.18756 0.91786 0.88979 0.93504 1.20092 1.01405 0.99769 0.95288 1.20929 0.95960 0.94829 0.97703 1.20566 1.01917 0.96588 0.92362 1.22228 0.99780 0.96933 1.00049 1.23303 0.93087 1.03154 0.83018 1.85955 1.52747 1.46636 1.39617 1.21857 0.94232 0.84008 0.97328 1.23679 0.98076 1.00453 0.97358 1.21433 0.90319 0.92700 0.92025 1.42432 1.44070 1.06596 1.42388 1.19622 1.12850 0.93330 1.11314 0.90901 1.25374 1.02303 0.95703 1.02464 1.69778 1.43264 1.01856 1.45902 0.85194 0.78722 0.77607 0.78892 1.19546 1.22905 1.21909 1.24040 1.00280 0.97057 0.98468 0.92494 0.89429 0.89947 0.85379 0.88360 0.86606 0.85098 0.84077 0.89809 0.88467 0.86807 0.90859 0.91744 0.85159 0.89726 0.94572 0.87452 0.92284 0.78603 0.94127 0.86832 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.27 8.65 127.77 1.11 3.38 16 2 N -0.59 -19.97 2.08 -819.31 -1.70 -21.67 16 3 C 0.51 18.60 7.36 87.66 0.65 19.24 16 4 O -0.57 -24.47 14.99 -3.04 -0.05 -24.51 16 5 C -0.09 -2.78 4.37 29.10 0.13 -2.66 16 6 C -0.10 -3.10 4.37 -19.88 -0.09 -3.19 16 7 C -0.09 -3.03 9.70 22.22 0.22 -2.82 16 8 C -0.16 -5.11 9.94 22.43 0.22 -4.89 16 9 C 0.11 3.32 6.47 22.52 0.15 3.46 16 10 C -0.16 -4.20 5.75 -19.75 -0.11 -4.32 16 11 C -0.08 -2.06 9.32 22.30 0.21 -1.85 16 12 C -0.08 -1.30 5.86 29.89 0.18 -1.13 16 13 C -0.15 -2.01 6.19 30.75 0.19 -1.82 16 14 C 0.05 0.79 7.03 72.12 0.51 1.29 16 15 O -0.33 -8.61 10.27 -91.77 -0.94 -9.55 16 16 C 0.13 4.22 4.13 45.58 0.19 4.41 16 17 C -0.16 -5.71 7.13 31.12 0.22 -5.49 16 18 C 0.15 5.71 4.55 45.51 0.21 5.92 16 19 N -0.71 -34.75 4.07 -320.44 -1.30 -36.05 16 20 C -0.24 -12.75 9.98 84.03 0.84 -11.92 16 21 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 22 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 23 N -0.96 -55.16 13.06 21.65 0.28 -54.88 16 24 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 28 C -0.16 -4.88 7.17 31.18 0.22 -4.66 16 29 H 0.06 2.33 6.15 -2.39 -0.01 2.32 16 30 H 0.09 2.20 6.40 -2.39 -0.02 2.18 16 31 H 0.08 2.26 6.55 -2.39 -0.02 2.25 16 32 H 0.13 2.93 7.35 -2.39 -0.02 2.91 16 33 H 0.10 3.26 8.05 -2.39 -0.02 3.24 16 34 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 35 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 44 H 0.04 1.60 7.18 -2.39 -0.02 1.58 16 45 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 47 H 0.38 19.66 5.53 -92.71 -0.51 19.14 16 48 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 49 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 50 H 0.07 2.37 5.90 -2.38 -0.01 2.36 16 Total: -1.00 -70.26 393.60 4.24 -66.02 By element: Atomic # 1 Polarization: 43.41 SS G_CDS: 0.44 Total: 43.84 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 5.49 Total: -10.13 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -2.72 Total: -112.60 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.99 Total: -34.06 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.26 4.24 -66.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998943525.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.147 kcal (2) G-P(sol) polarization free energy of solvation -70.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds