Wall clock time and date at job start Wed Apr 1 2020 03:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00375 * 2 1 4 4 O 1.21553 * 119.99872 * 184.82364 * 3 2 1 5 5 C 1.47839 * 119.99708 * 4.54473 * 3 2 1 6 6 C 1.39601 * 120.14648 * 320.83100 * 5 3 2 7 7 C 1.37939 * 119.85033 * 179.74181 * 6 5 3 8 8 C 1.38380 * 120.14424 * 0.51171 * 7 6 5 9 9 C 1.38338 * 120.29620 * 359.76131 * 8 7 6 10 10 C 1.50701 * 119.92821 * 179.97438 * 9 8 7 11 11 H 1.08997 * 110.80276 * 183.60774 * 10 9 8 12 12 C 1.54817 * 110.90423 * 59.98356 * 10 9 8 13 13 C 1.54095 * 104.18356 * 220.91994 * 12 10 9 14 14 O 1.43742 * 107.29687 * 357.96929 * 13 12 10 15 15 C 1.44380 * 106.97488 * 26.51432 * 14 13 12 16 16 C 1.37978 * 120.14057 * 359.97438 * 9 8 7 17 17 C 1.46508 * 119.99815 * 179.97438 * 2 1 3 18 18 C 1.53777 * 113.61189 * 39.13463 * 17 2 1 19 19 C 1.53955 * 87.02118 * 220.04551 * 18 17 2 20 20 N 1.46505 * 113.66704 * 139.93075 * 19 18 17 21 21 C 1.36933 * 119.99737 * 107.44513 * 20 19 18 22 22 H 1.07999 * 120.00083 * 359.97438 * 21 20 19 23 23 C 1.38806 * 119.99798 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00501 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99975 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47250 * 59.99660 * 25 23 21 27 27 H 1.48506 * 109.47149 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47075 * 299.99673 * 25 23 21 29 29 C 1.53782 * 113.61357 * 301.52602 * 17 2 1 30 30 H 1.08997 * 109.46988 * 85.86181 * 1 2 3 31 31 H 1.08994 * 109.47117 * 205.87040 * 1 2 3 32 32 H 1.09009 * 109.46722 * 325.86674 * 1 2 3 33 33 H 1.07995 * 120.07313 * 359.97438 * 6 5 3 34 34 H 1.07993 * 119.92441 * 180.25592 * 7 6 5 35 35 H 1.08005 * 119.85012 * 179.74469 * 8 7 6 36 36 H 1.08999 * 110.48582 * 339.59367 * 12 10 9 37 37 H 1.08998 * 110.48719 * 102.24502 * 12 10 9 38 38 H 1.09002 * 109.88145 * 117.39772 * 13 12 10 39 39 H 1.09012 * 109.87738 * 238.39555 * 13 12 10 40 40 H 1.08998 * 110.61791 * 201.43435 * 15 14 13 41 41 H 1.09008 * 110.61603 * 78.43933 * 15 14 13 42 42 H 1.08005 * 120.06726 * 179.97438 * 16 9 8 43 43 H 1.08995 * 112.84783 * 170.33237 * 17 2 1 44 44 H 1.08999 * 113.61716 * 334.57021 * 18 17 2 45 45 H 1.08999 * 113.61465 * 105.47194 * 18 17 2 46 46 H 1.08991 * 113.54201 * 270.81797 * 19 18 17 47 47 H 0.96998 * 119.99608 * 287.44756 * 20 19 18 48 48 H 0.96991 * 120.00495 * 180.02562 * 24 23 21 49 49 H 1.08991 * 113.61606 * 254.53123 * 29 17 2 50 50 H 1.08996 * 113.61346 * 25.35410 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3512 1.1689 -0.0885 5 6 1.4033 2.4455 0.1015 6 6 0.1928 2.6132 -0.5734 7 6 -0.4912 3.8066 -0.4702 8 6 0.0253 4.8400 0.2917 9 6 1.2271 4.6823 0.9584 10 6 1.7822 5.8133 1.7853 11 1 2.7599 5.5529 2.1907 12 6 0.8008 6.2033 2.9174 13 6 0.8498 7.7432 2.9457 14 8 1.8076 8.1586 1.9577 15 6 1.8568 7.1203 0.9556 16 6 1.9186 3.4917 0.8679 17 6 2.1975 -1.2688 0.0006 18 6 1.5589 -2.3491 -0.8882 19 6 1.9073 -3.3557 0.2233 20 7 0.8600 -4.3513 0.4645 21 6 1.0429 -5.6481 0.0645 22 1 1.9590 -5.9368 -0.4292 23 6 0.0503 -6.5913 0.2925 24 7 -1.0664 -6.2394 0.8937 25 14 0.3001 -8.3605 -0.2526 26 1 1.4938 -8.9242 0.4275 27 1 -0.8975 -9.1624 0.1050 28 1 0.5028 -8.4014 -1.7231 29 6 1.8674 -2.1701 1.2021 30 1 -0.3633 0.0742 -1.0250 31 1 -0.3633 -0.9246 0.4484 32 1 -0.3633 0.8507 0.5767 33 1 -0.2091 1.8091 -1.1720 34 1 -1.4297 3.9362 -0.9885 35 1 -0.5122 5.7738 0.3658 36 1 -0.2065 5.8579 2.6848 37 1 1.1353 5.7933 3.8703 38 1 -0.1322 8.1498 2.7040 39 1 1.1599 8.0860 3.9330 40 1 2.7924 7.1685 0.3986 41 1 1.0033 7.1965 0.2818 42 1 2.8570 3.3701 1.3886 43 1 3.2666 -1.1404 -0.1682 44 1 0.4873 -2.2155 -1.0362 45 1 2.0974 -2.5224 -1.8199 46 1 2.8971 -3.7989 0.1146 47 1 0.0370 -4.0918 0.9075 48 1 -1.7598 -6.8985 1.0534 49 1 2.6545 -2.1991 1.9554 50 1 0.8808 -1.9866 1.6275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999016688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:52 Heat of formation + Delta-G solvation = -11.583926 kcal Electronic energy + Delta-G solvation = -29389.986521 eV Core-core repulsion = 25383.374813 eV Total energy + Delta-G solvation = -4006.611707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87578 -40.04548 -38.74837 -37.71060 -35.02397 -33.85837 -33.03848 -31.39763 -30.69607 -29.93705 -28.78663 -27.13945 -25.27811 -25.06842 -24.03723 -23.45870 -22.70759 -22.11955 -21.04734 -19.38815 -18.91334 -17.53010 -17.13759 -16.93830 -16.91473 -16.26775 -16.04864 -15.70451 -15.42006 -14.89192 -14.82213 -14.42532 -14.32895 -13.94593 -13.77513 -13.57348 -13.31692 -13.06363 -13.00998 -12.83251 -12.64687 -12.25364 -12.09134 -11.96580 -11.87642 -11.84237 -11.62408 -11.31852 -11.26629 -11.07968 -10.91416 -10.61463 -10.49323 -10.32167 -10.15688 -10.06516 -9.83480 -9.58146 -9.25541 -9.01762 -8.92628 -8.48900 -7.02517 -5.83333 -3.12365 0.65799 0.99338 2.63589 2.97480 3.39741 3.40978 3.45629 3.46367 3.51885 4.13473 4.16798 4.35241 4.44728 4.55387 4.56021 4.58578 4.70980 4.75618 4.79274 4.94546 5.06461 5.11989 5.13123 5.18346 5.25276 5.28162 5.32856 5.34118 5.39866 5.45804 5.48951 5.52946 5.58432 5.67095 5.70792 5.82359 5.92072 6.00747 6.03912 6.11891 6.15734 6.24921 6.30043 6.37955 6.40654 6.52861 6.54467 6.75161 6.99617 7.44712 7.65411 8.12900 8.35063 9.46461 10.02667 10.37437 11.38899 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.001797 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.985250 B =15581.297032 C =15770.851446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.590 5.590 3 C 0.555 3.445 4 O -0.540 6.540 5 C -0.120 4.120 6 C -0.094 4.094 7 C -0.122 4.122 8 C -0.098 4.098 9 C -0.084 4.084 10 C -0.082 4.082 11 H 0.096 0.904 12 C -0.150 4.150 13 C 0.046 3.954 14 O -0.378 6.378 15 C 0.054 3.946 16 C -0.060 4.060 17 C 0.115 3.885 18 C -0.174 4.174 19 C 0.170 3.830 20 N -0.709 5.709 21 C -0.245 4.245 22 H 0.072 0.928 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 C -0.163 4.163 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.131 0.869 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.064 0.936 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 27.963 0.988 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.321 5.321 3 C 0.343 3.657 4 O -0.418 6.418 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.140 4.140 8 C -0.116 4.116 9 C -0.084 4.084 10 C -0.100 4.100 11 H 0.115 0.885 12 C -0.187 4.187 13 C -0.031 4.031 14 O -0.297 6.297 15 C -0.022 4.022 16 C -0.079 4.079 17 C 0.012 3.988 18 C -0.216 4.216 19 C 0.057 3.943 20 N -0.347 5.347 21 C -0.376 4.376 22 H 0.090 0.910 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.203 4.203 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.149 0.851 43 H 0.133 0.867 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.991 27.918 0.902 27.950 hybrid contribution -0.554 -1.151 -0.172 1.289 sum 0.437 26.767 0.730 26.781 Atomic orbital electron populations 1.22133 0.79687 1.04011 1.01575 1.47775 1.06979 1.05746 1.71604 1.18386 0.87066 0.83618 0.76630 1.90766 1.13655 1.87281 1.50130 1.19953 0.96220 0.94865 1.01252 1.21730 0.93259 0.98201 0.98067 1.21095 1.00371 0.93009 0.99568 1.21136 0.95175 0.98962 0.96330 1.19477 0.95446 0.94498 0.98990 1.21707 0.99947 0.93516 0.94862 0.88544 1.23085 1.00399 0.95800 0.99434 1.23187 0.93035 0.93739 0.93157 1.88890 1.61907 1.43234 1.35652 1.23705 1.02771 0.84679 0.91091 1.21066 0.98987 0.91124 0.96712 1.22669 0.97348 0.80015 0.98747 1.24360 1.01079 0.96679 0.99525 1.21367 0.93793 0.87241 0.91884 1.42336 1.17054 1.05581 1.69699 1.19270 1.01220 0.85540 1.31620 0.91025 1.24762 0.96502 0.98323 1.01215 1.69641 1.07219 1.33860 1.47370 0.86252 0.76854 0.84674 0.78305 1.21192 1.21681 1.21204 1.23935 1.01860 0.97171 0.97308 0.92228 0.89812 0.90776 0.84448 0.85239 0.85796 0.90077 0.89991 0.92268 0.89705 0.88535 0.91651 0.85129 0.86699 0.89883 0.92060 0.90212 0.78117 0.93387 0.91693 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 7.56 59.85 0.45 1.21 16 2 N -0.59 -8.12 3.08 -174.12 -0.54 -8.66 16 3 C 0.55 8.08 7.35 -12.33 -0.09 7.99 16 4 O -0.54 -9.65 16.39 5.32 0.09 -9.57 16 5 C -0.12 -1.39 5.23 -104.97 -0.55 -1.93 16 6 C -0.09 -0.87 7.57 -39.18 -0.30 -1.16 16 7 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 8 C -0.10 -0.70 8.19 -39.49 -0.32 -1.03 16 9 C -0.08 -0.69 4.94 -104.68 -0.52 -1.21 16 10 C -0.08 -0.57 3.34 -89.76 -0.30 -0.87 16 11 H 0.10 0.69 7.95 -51.93 -0.41 0.27 16 12 C -0.15 -0.88 6.50 -25.20 -0.16 -1.04 16 13 C 0.05 0.28 7.70 37.73 0.29 0.57 16 14 O -0.38 -3.30 11.52 -35.23 -0.41 -3.70 16 15 C 0.05 0.38 7.10 38.21 0.27 0.65 16 16 C -0.06 -0.63 9.27 -39.19 -0.36 -0.99 16 17 C 0.12 1.77 4.22 -67.12 -0.28 1.49 16 18 C -0.17 -2.92 7.32 -25.83 -0.19 -3.11 16 19 C 0.17 3.26 4.48 -67.02 -0.30 2.96 16 20 N -0.71 -17.14 5.40 -52.55 -0.28 -17.43 16 21 C -0.25 -6.65 9.97 -15.06 -0.15 -6.80 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 25 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 C -0.16 -2.66 7.35 -25.91 -0.19 -2.85 16 30 H 0.06 0.57 6.90 -51.93 -0.36 0.22 16 31 H 0.08 1.01 6.17 -51.93 -0.32 0.69 16 32 H 0.07 0.70 5.81 -51.92 -0.30 0.40 16 33 H 0.14 1.14 5.32 -52.49 -0.28 0.86 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.65 7.22 -52.48 -0.38 0.27 16 36 H 0.08 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.40 6.69 -51.92 -0.35 0.06 16 42 H 0.13 1.39 7.98 -52.48 -0.42 0.97 16 43 H 0.12 1.86 7.20 -51.93 -0.37 1.49 16 44 H 0.08 1.41 6.72 -51.93 -0.35 1.06 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 47 H 0.38 9.80 7.93 -40.82 -0.32 9.47 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 1.34 6.85 -51.93 -0.36 0.98 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -32.37 395.04 -10.20 -42.58 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.52 Total: 8.44 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.20 Total: -7.85 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.10 Total: -52.81 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.32 Total: -13.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.37 -10.20 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999016688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.992 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds