Wall clock time and date at job start Wed Apr 1 2020 03:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00375 * 2 1 4 4 O 1.21553 * 119.99872 * 184.82364 * 3 2 1 5 5 C 1.47839 * 119.99708 * 4.54473 * 3 2 1 6 6 C 1.39601 * 120.14648 * 320.83100 * 5 3 2 7 7 C 1.37939 * 119.85033 * 179.74181 * 6 5 3 8 8 C 1.38380 * 120.14424 * 0.51171 * 7 6 5 9 9 C 1.38338 * 120.29620 * 359.76131 * 8 7 6 10 10 C 1.50701 * 119.92821 * 179.97438 * 9 8 7 11 11 H 1.08997 * 110.80276 * 183.60774 * 10 9 8 12 12 C 1.54817 * 110.90423 * 59.98356 * 10 9 8 13 13 C 1.54095 * 104.18356 * 220.91994 * 12 10 9 14 14 O 1.43742 * 107.29687 * 357.96929 * 13 12 10 15 15 C 1.44380 * 106.97488 * 26.51432 * 14 13 12 16 16 C 1.37978 * 120.14057 * 359.97438 * 9 8 7 17 17 C 1.46508 * 119.99815 * 179.97438 * 2 1 3 18 18 C 1.53777 * 113.61189 * 39.13463 * 17 2 1 19 19 C 1.53955 * 87.02118 * 220.04551 * 18 17 2 20 20 N 1.46505 * 113.66704 * 139.93075 * 19 18 17 21 21 C 1.36933 * 119.99737 * 107.44513 * 20 19 18 22 22 H 1.07999 * 120.00083 * 359.97438 * 21 20 19 23 23 C 1.38806 * 119.99798 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00501 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99975 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47250 * 59.99660 * 25 23 21 27 27 H 1.48506 * 109.47149 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47075 * 299.99673 * 25 23 21 29 29 C 1.53782 * 113.61357 * 301.52602 * 17 2 1 30 30 H 1.08997 * 109.46988 * 85.86181 * 1 2 3 31 31 H 1.08994 * 109.47117 * 205.87040 * 1 2 3 32 32 H 1.09009 * 109.46722 * 325.86674 * 1 2 3 33 33 H 1.07995 * 120.07313 * 359.97438 * 6 5 3 34 34 H 1.07993 * 119.92441 * 180.25592 * 7 6 5 35 35 H 1.08005 * 119.85012 * 179.74469 * 8 7 6 36 36 H 1.08999 * 110.48582 * 339.59367 * 12 10 9 37 37 H 1.08998 * 110.48719 * 102.24502 * 12 10 9 38 38 H 1.09002 * 109.88145 * 117.39772 * 13 12 10 39 39 H 1.09012 * 109.87738 * 238.39555 * 13 12 10 40 40 H 1.08998 * 110.61791 * 201.43435 * 15 14 13 41 41 H 1.09008 * 110.61603 * 78.43933 * 15 14 13 42 42 H 1.08005 * 120.06726 * 179.97438 * 16 9 8 43 43 H 1.08995 * 112.84783 * 170.33237 * 17 2 1 44 44 H 1.08999 * 113.61716 * 334.57021 * 18 17 2 45 45 H 1.08999 * 113.61465 * 105.47194 * 18 17 2 46 46 H 1.08991 * 113.54201 * 270.81797 * 19 18 17 47 47 H 0.96998 * 119.99608 * 287.44756 * 20 19 18 48 48 H 0.96991 * 120.00495 * 180.02562 * 24 23 21 49 49 H 1.08991 * 113.61606 * 254.53123 * 29 17 2 50 50 H 1.08996 * 113.61346 * 25.35410 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3512 1.1689 -0.0885 5 6 1.4033 2.4455 0.1015 6 6 0.1928 2.6132 -0.5734 7 6 -0.4912 3.8066 -0.4702 8 6 0.0253 4.8400 0.2917 9 6 1.2271 4.6823 0.9584 10 6 1.7822 5.8133 1.7853 11 1 2.7599 5.5529 2.1907 12 6 0.8008 6.2033 2.9174 13 6 0.8498 7.7432 2.9457 14 8 1.8076 8.1586 1.9577 15 6 1.8568 7.1203 0.9556 16 6 1.9186 3.4917 0.8679 17 6 2.1975 -1.2688 0.0006 18 6 1.5589 -2.3491 -0.8882 19 6 1.9073 -3.3557 0.2233 20 7 0.8600 -4.3513 0.4645 21 6 1.0429 -5.6481 0.0645 22 1 1.9590 -5.9368 -0.4292 23 6 0.0503 -6.5913 0.2925 24 7 -1.0664 -6.2394 0.8937 25 14 0.3001 -8.3605 -0.2526 26 1 1.4938 -8.9242 0.4275 27 1 -0.8975 -9.1624 0.1050 28 1 0.5028 -8.4014 -1.7231 29 6 1.8674 -2.1701 1.2021 30 1 -0.3633 0.0742 -1.0250 31 1 -0.3633 -0.9246 0.4484 32 1 -0.3633 0.8507 0.5767 33 1 -0.2091 1.8091 -1.1720 34 1 -1.4297 3.9362 -0.9885 35 1 -0.5122 5.7738 0.3658 36 1 -0.2065 5.8579 2.6848 37 1 1.1353 5.7933 3.8703 38 1 -0.1322 8.1498 2.7040 39 1 1.1599 8.0860 3.9330 40 1 2.7924 7.1685 0.3986 41 1 1.0033 7.1965 0.2818 42 1 2.8570 3.3701 1.3886 43 1 3.2666 -1.1404 -0.1682 44 1 0.4873 -2.2155 -1.0362 45 1 2.0974 -2.5224 -1.8199 46 1 2.8971 -3.7989 0.1146 47 1 0.0370 -4.0918 0.9075 48 1 -1.7598 -6.8985 1.0534 49 1 2.6545 -2.1991 1.9554 50 1 0.8808 -1.9866 1.6275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999016688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:50 Heat of formation + Delta-G solvation = -30.850030 kcal Electronic energy + Delta-G solvation = -29390.821962 eV Core-core repulsion = 25383.374813 eV Total energy + Delta-G solvation = -4007.447148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.79252 -40.85132 -39.72984 -38.79294 -36.33113 -35.12223 -34.23206 -32.26652 -31.81126 -31.13174 -29.40901 -28.13458 -26.74255 -26.44097 -25.31455 -24.31095 -23.23428 -23.20161 -21.89969 -20.51298 -20.21054 -19.05830 -18.34486 -17.97107 -17.54773 -17.21476 -16.77571 -16.50794 -16.46478 -16.16452 -16.04651 -15.52161 -15.43941 -14.93834 -14.79664 -14.51117 -14.31516 -14.26295 -13.98869 -13.87155 -13.52889 -13.36296 -13.21410 -13.14277 -12.92621 -12.75452 -12.65938 -12.38632 -12.29423 -12.25619 -12.15413 -12.03187 -11.91370 -11.69997 -11.59028 -11.45406 -10.93378 -10.85826 -10.66276 -9.98390 -9.68123 -9.64335 -8.99496 -7.94766 -5.23023 -0.08458 0.33210 1.48772 1.50804 1.56816 1.62318 1.92362 2.57161 2.69472 2.97666 3.36383 3.37386 3.59815 3.68712 3.73652 3.77305 3.91351 3.92079 3.97624 4.06128 4.13528 4.14397 4.23962 4.25942 4.28677 4.30226 4.34520 4.53795 4.57702 4.69259 4.74298 4.77370 4.81835 4.85456 4.86131 4.89066 4.93135 5.00372 5.03712 5.05318 5.11839 5.12586 5.33343 5.37230 5.41772 5.50531 5.52507 5.63049 5.87768 5.91744 6.26992 6.33820 7.01529 7.34083 8.08416 8.32958 9.27914 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.001797 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.985250 B =15581.297032 C =15770.851446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.590 5.590 3 C 0.552 3.448 4 O -0.584 6.584 5 C -0.141 4.141 6 C -0.096 4.096 7 C -0.115 4.115 8 C -0.089 4.089 9 C -0.080 4.080 10 C -0.082 4.082 11 H 0.087 0.913 12 C -0.145 4.145 13 C 0.042 3.958 14 O -0.402 6.402 15 C 0.053 3.947 16 C -0.076 4.076 17 C 0.129 3.871 18 C -0.160 4.160 19 C 0.154 3.846 20 N -0.721 5.721 21 C -0.247 4.247 22 H 0.076 0.924 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.971 3.029 26 H -0.280 1.280 27 H -0.296 1.296 28 H -0.279 1.279 29 C -0.149 4.149 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.376 0.624 48 H 0.251 0.749 49 H 0.069 0.931 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 29.717 0.373 29.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.320 5.320 3 C 0.342 3.658 4 O -0.465 6.465 5 C -0.144 4.144 6 C -0.114 4.114 7 C -0.133 4.133 8 C -0.107 4.107 9 C -0.080 4.080 10 C -0.100 4.100 11 H 0.106 0.894 12 C -0.182 4.182 13 C -0.034 4.034 14 O -0.322 6.322 15 C -0.023 4.023 16 C -0.095 4.095 17 C 0.025 3.975 18 C -0.201 4.201 19 C 0.043 3.957 20 N -0.358 5.358 21 C -0.378 4.378 22 H 0.094 0.906 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.800 3.200 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.205 1.205 29 C -0.189 4.189 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.169 0.831 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.208 0.792 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.304 29.706 0.274 29.709 hybrid contribution -0.108 -1.564 0.029 1.568 sum -0.412 28.142 0.303 28.147 Atomic orbital electron populations 1.22323 0.77836 1.04301 1.03071 1.47796 1.08069 1.04934 1.71192 1.18916 0.86736 0.84657 0.75489 1.90731 1.15614 1.87967 1.52200 1.19784 0.97504 0.93614 1.03520 1.21860 0.92375 0.99453 0.97724 1.21448 1.01020 0.91928 0.98889 1.21481 0.94397 0.99941 0.94888 1.19554 0.95690 0.93752 0.98973 1.21680 0.99950 0.93174 0.95242 0.89420 1.23072 1.00479 0.95673 0.99008 1.23334 0.93247 0.93842 0.93024 1.88866 1.62809 1.43999 1.36493 1.23766 1.03339 0.84177 0.90993 1.21062 0.99031 0.92064 0.97320 1.22323 0.97055 0.80751 0.97388 1.24125 1.01207 0.95889 0.98897 1.21637 0.92517 0.87286 0.94237 1.42453 1.17793 1.05660 1.69941 1.19651 1.01001 0.86847 1.30345 0.90622 1.25521 0.96591 1.02101 1.02284 1.69786 1.07999 1.34693 1.49231 0.85254 0.76488 0.80172 0.78081 1.20606 1.22195 1.20468 1.23776 1.02136 0.95740 0.97289 0.90352 0.90895 0.88827 0.83543 0.82178 0.83086 0.89083 0.89813 0.90891 0.89114 0.88715 0.90319 0.86567 0.87510 0.89854 0.91764 0.90454 0.79176 0.93988 0.91268 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 7.56 127.77 0.97 2.33 16 2 N -0.59 -15.91 3.08 -823.06 -2.54 -18.45 16 3 C 0.55 16.11 7.35 86.78 0.64 16.75 16 4 O -0.58 -21.51 16.39 -3.88 -0.06 -21.57 16 5 C -0.14 -3.15 5.23 -20.09 -0.11 -3.26 16 6 C -0.10 -1.53 7.57 22.53 0.17 -1.36 16 7 C -0.12 -1.27 10.03 22.23 0.22 -1.05 16 8 C -0.09 -0.96 8.19 22.33 0.18 -0.78 16 9 C -0.08 -1.16 4.94 -19.90 -0.10 -1.26 16 10 C -0.08 -1.03 3.34 -10.24 -0.03 -1.07 16 11 H 0.09 1.24 7.95 -2.39 -0.02 1.23 16 12 C -0.14 -1.40 6.50 31.58 0.21 -1.19 16 13 C 0.04 0.43 7.70 72.35 0.56 0.99 16 14 O -0.40 -6.43 11.52 -148.98 -1.72 -8.15 16 15 C 0.05 0.67 7.10 72.66 0.52 1.18 16 16 C -0.08 -1.56 9.27 22.53 0.21 -1.35 16 17 C 0.13 3.94 4.22 45.51 0.19 4.13 16 18 C -0.16 -5.27 7.32 31.18 0.23 -5.04 16 19 C 0.15 5.92 4.48 45.58 0.20 6.12 16 20 N -0.72 -35.14 5.40 -320.16 -1.73 -36.87 16 21 C -0.25 -13.41 9.97 84.03 0.84 -12.57 16 22 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 24 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 25 Si 0.97 45.39 29.55 68.60 2.03 47.41 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 29 C -0.15 -4.88 7.35 31.12 0.23 -4.65 16 30 H 0.08 1.33 6.90 -2.39 -0.02 1.31 16 31 H 0.07 1.69 6.17 -2.39 -0.01 1.67 16 32 H 0.09 1.57 5.81 -2.38 -0.01 1.56 16 33 H 0.15 2.00 5.32 -2.91 -0.02 1.99 16 34 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.15 0.85 7.22 -2.91 -0.02 0.83 16 36 H 0.09 0.70 7.20 -2.39 -0.02 0.68 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 0.75 6.69 -2.38 -0.02 0.73 16 42 H 0.12 2.63 7.98 -2.91 -0.02 2.60 16 43 H 0.11 3.50 7.20 -2.39 -0.02 3.48 16 44 H 0.08 2.77 6.72 -2.39 -0.02 2.75 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 47 H 0.38 19.43 7.93 -92.71 -0.73 18.70 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.08 2.71 6.85 -2.39 -0.02 2.69 16 Total: -1.00 -70.57 395.04 2.07 -68.49 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.23 Total: 32.15 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 5.59 Total: -5.69 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -3.99 Total: -112.65 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.78 Total: -29.72 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.57 2.07 -68.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999016688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.641 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds