Wall clock time and date at job start Wed Apr 1 2020 03:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35893 * 117.00046 * 2 1 4 4 C 1.38647 * 119.95034 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.87278 * 179.97438 * 4 3 2 6 6 C 1.38175 * 119.99729 * 0.02562 * 5 4 3 7 7 C 1.38497 * 120.33182 * 359.97438 * 6 5 4 8 8 C 1.38167 * 119.88412 * 0.02562 * 7 6 5 9 9 C 1.51358 * 109.78018 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.30489 * 101.83739 * 9 8 7 11 11 C 1.50698 * 110.30402 * 223.89362 * 9 8 7 12 12 O 1.21276 * 120.00438 * 359.97438 * 11 9 8 13 13 N 1.34782 * 120.00050 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99836 * 359.97438 * 13 11 9 15 15 C 1.46499 * 120.00255 * 180.02562 * 13 11 9 16 16 C 1.53771 * 113.61673 * 135.24769 * 15 13 11 17 17 C 1.53955 * 87.02055 * 89.22930 * 16 15 13 18 18 N 1.46505 * 113.74610 * 139.94406 * 17 16 15 19 19 C 1.36936 * 119.99795 * 107.40040 * 18 17 16 20 20 H 1.07993 * 120.00381 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99681 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47184 * 59.99821 * 23 21 19 25 25 H 1.48498 * 109.47331 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46879 * 300.00001 * 23 21 19 27 27 C 1.53780 * 113.61027 * 232.85873 * 15 13 11 28 28 C 1.54349 * 105.16505 * 342.81717 * 9 8 7 29 29 C 1.51377 * 130.36392 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47113 * 60.00727 * 1 2 3 31 31 H 1.09000 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47180 * 300.00321 * 1 2 3 33 33 H 1.08002 * 120.06659 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00304 * 180.02562 * 5 4 3 35 35 H 1.08003 * 119.83439 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.47713 * 263.98947 * 14 13 11 37 37 H 1.09005 * 109.47298 * 23.98539 * 14 13 11 38 38 H 1.08999 * 109.46965 * 143.98707 * 14 13 11 39 39 H 1.08997 * 112.84508 * 4.04933 * 15 13 11 40 40 H 1.09000 * 113.61895 * 203.74939 * 16 15 13 41 41 H 1.09009 * 113.61793 * 334.65395 * 16 15 13 42 42 H 1.08999 * 113.53807 * 270.81106 * 17 16 15 43 43 H 0.96996 * 119.99733 * 287.40272 * 18 17 16 44 44 H 0.97000 * 120.00295 * 179.97438 * 22 21 19 45 45 H 1.08995 * 113.61788 * 25.34498 * 27 15 13 46 46 H 1.09007 * 113.61231 * 156.16777 * 27 15 13 47 47 H 1.08997 * 110.82263 * 144.55960 * 28 9 8 48 48 H 1.09007 * 110.82378 * 268.11244 * 28 9 8 49 49 H 1.09003 * 110.30519 * 316.07711 * 29 7 6 50 50 H 1.09002 * 110.30029 * 78.13210 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2899 2.3730 0.0005 5 6 1.9186 3.6027 0.0011 6 6 3.2986 3.6731 0.0005 7 6 4.0579 2.5149 0.0000 8 6 3.4336 1.2823 -0.0005 9 6 4.4727 0.1818 -0.0004 10 1 4.5795 -0.2374 1.0000 11 6 4.0915 -0.8974 -0.9807 12 8 3.0708 -0.7960 -1.6278 13 7 4.8844 -1.9759 -1.1377 14 6 6.1171 -2.0988 -0.3558 15 6 4.5142 -3.0248 -2.0911 16 6 5.6852 -3.5045 -2.9647 17 6 5.9787 -4.5387 -1.8626 18 7 6.3613 -5.8561 -2.3766 19 6 7.6604 -6.2780 -2.2798 20 1 8.4029 -5.6397 -1.8242 21 6 8.0230 -7.5261 -2.7673 22 7 7.1182 -8.3038 -3.3230 23 14 9.7951 -8.1019 -2.6346 24 1 10.1960 -8.1446 -1.2054 25 1 9.9203 -9.4586 -3.2252 26 1 10.6779 -7.1598 -3.3684 27 6 4.4933 -4.4350 -1.4780 28 6 5.7849 0.8654 -0.4399 29 6 5.5601 2.3275 -0.0001 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2113 2.3168 0.0014 34 1 1.3317 4.5093 0.0019 35 1 3.7874 4.6362 0.0014 36 1 6.9594 -1.7373 -0.9458 37 1 6.0304 -1.5059 0.5548 38 1 6.2789 -3.1446 -0.0944 39 1 3.6162 -2.7824 -2.6593 40 1 5.3718 -3.9498 -3.9090 41 1 6.4722 -2.7603 -3.0872 42 1 6.6560 -4.1723 -1.0912 43 1 5.6943 -6.4296 -2.7855 44 1 7.3716 -9.1758 -3.6640 45 1 4.3194 -4.4408 -0.4021 46 1 3.8523 -5.1348 -2.0143 47 1 6.6401 0.4317 0.0784 48 1 5.9121 0.8014 -1.5206 49 1 6.0266 3.0116 -0.7090 50 1 5.9614 2.4888 1.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999521005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:42 Heat of formation + Delta-G solvation = 6.527840 kcal Electronic energy + Delta-G solvation = -30732.073041 eV Core-core repulsion = 26726.246719 eV Total energy + Delta-G solvation = -4005.826322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13397 -39.86796 -38.43162 -37.65261 -35.46203 -34.40793 -32.93837 -30.94681 -30.06982 -29.36459 -27.83336 -27.26336 -27.07008 -25.09060 -24.38031 -22.73512 -22.62793 -21.26567 -21.04257 -19.81291 -18.45888 -17.66620 -17.28278 -17.05319 -16.51425 -15.93974 -15.67632 -15.58852 -15.06292 -14.82551 -14.74607 -14.39501 -14.17997 -13.79799 -13.72983 -13.19020 -13.10962 -12.88574 -12.71265 -12.61668 -12.28580 -12.17119 -11.92331 -11.82794 -11.75046 -11.71121 -11.46700 -11.40272 -11.27355 -11.02519 -10.97396 -10.87860 -10.66817 -10.27886 -10.22940 -9.83615 -9.48683 -9.38798 -8.86927 -8.76927 -8.31701 -8.18860 -6.96499 -5.78942 -3.07757 1.11042 1.33768 2.83786 3.13457 3.29667 3.42139 3.46603 3.47849 3.59444 4.12418 4.25565 4.57976 4.60741 4.71853 4.74350 4.87514 4.93537 5.00448 5.07117 5.12655 5.18616 5.19917 5.27766 5.32352 5.35857 5.40654 5.45276 5.47048 5.54028 5.55033 5.63898 5.67551 5.77806 5.82099 5.88930 5.91070 6.05991 6.17725 6.24857 6.26205 6.35622 6.36429 6.38095 6.58673 6.61812 6.64606 6.78744 7.16889 7.37972 7.64208 7.66708 8.39411 8.42929 9.50393 10.08974 10.43255 11.43370 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.002379 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.065935 B =11765.232907 C =12735.225811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.290 6.290 3 C 0.173 3.827 4 C -0.221 4.221 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.054 4.054 8 C -0.117 4.117 9 C -0.058 4.058 10 H 0.106 0.894 11 C 0.520 3.480 12 O -0.520 6.520 13 N -0.593 5.593 14 C 0.062 3.938 15 C 0.118 3.882 16 C -0.175 4.175 17 C 0.158 3.842 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.163 4.163 28 C -0.112 4.112 29 C -0.081 4.081 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 24.803 10.063 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.202 6.202 3 C 0.127 3.873 4 C -0.240 4.240 5 C -0.094 4.094 6 C -0.173 4.173 7 C -0.055 4.055 8 C -0.118 4.118 9 C -0.079 4.079 10 H 0.124 0.876 11 C 0.307 3.693 12 O -0.395 6.395 13 N -0.325 5.325 14 C -0.081 4.081 15 C 0.014 3.986 16 C -0.217 4.217 17 C 0.047 3.953 18 N -0.350 5.350 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.203 4.203 28 C -0.149 4.149 29 C -0.118 4.118 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.548 24.559 9.736 28.091 hybrid contribution 0.425 -0.464 -0.139 0.644 sum -9.123 24.095 9.597 27.494 Atomic orbital electron populations 1.23008 0.79248 1.03798 1.00621 1.86291 1.20437 1.26061 1.87368 1.18557 0.90684 0.84611 0.93472 1.21119 0.99900 0.92225 1.10740 1.20787 0.94235 0.96904 0.97446 1.20429 0.93386 0.97275 1.06239 1.20367 0.95675 0.92281 0.97129 1.19265 0.90316 0.94712 1.07521 1.20694 0.94295 0.93108 0.99794 0.87587 1.20293 0.83380 0.82027 0.83628 1.90691 1.24456 1.77623 1.46699 1.47461 1.23364 1.20535 1.41184 1.22215 0.86535 1.04196 0.95163 1.21840 0.99223 0.86549 0.91035 1.24248 0.96929 1.00235 1.00248 1.22022 0.92461 0.86915 0.93933 1.42427 1.08441 1.14284 1.69884 1.19233 0.86219 0.99230 1.32862 0.91191 1.24770 0.97723 0.97096 1.01313 1.69649 1.32507 1.10794 1.45029 0.86271 0.84594 0.77741 0.77589 1.21234 1.21702 1.21247 1.23876 1.00368 0.95554 1.00512 1.22404 0.95652 0.94383 1.02478 1.21074 0.91235 0.97013 1.02430 0.92875 0.88477 0.93251 0.85438 0.85799 0.86172 0.92268 0.91311 0.89406 0.88273 0.89577 0.92404 0.89818 0.78103 0.93396 0.92029 0.89481 0.89298 0.90239 0.90118 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.29 -4.05 8.10 -42.08 -0.34 -4.39 16 3 C 0.17 2.28 6.16 -39.17 -0.24 2.04 16 4 C -0.22 -2.37 9.03 -39.47 -0.36 -2.73 16 5 C -0.08 -0.71 10.04 -39.65 -0.40 -1.10 16 6 C -0.16 -1.47 10.04 -39.51 -0.40 -1.86 16 7 C -0.05 -0.57 6.14 -104.22 -0.64 -1.21 16 8 C -0.12 -1.48 5.34 -104.06 -0.56 -2.03 16 9 C -0.06 -0.67 2.31 -91.89 -0.21 -0.88 16 10 H 0.11 1.08 7.34 -51.93 -0.38 0.70 16 11 C 0.52 7.74 6.73 -10.98 -0.07 7.66 16 12 O -0.52 -9.49 13.03 -17.12 -0.22 -9.72 16 13 N -0.59 -8.42 3.09 -173.01 -0.53 -8.95 16 14 C 0.06 0.70 7.82 59.85 0.47 1.17 16 15 C 0.12 1.91 4.48 -67.12 -0.30 1.61 16 16 C -0.17 -3.08 7.31 -25.83 -0.19 -3.27 16 17 C 0.16 3.05 3.83 -67.02 -0.26 2.80 16 18 N -0.71 -17.64 5.41 -52.55 -0.28 -17.92 16 19 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C -0.16 -2.79 7.20 -25.92 -0.19 -2.98 16 28 C -0.11 -0.99 5.50 -25.33 -0.14 -1.13 16 29 C -0.08 -0.64 6.77 -26.86 -0.18 -0.82 16 30 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 33 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.60 5.49 -51.93 -0.29 0.31 16 38 H 0.09 1.10 4.88 -51.93 -0.25 0.85 16 39 H 0.10 1.73 7.17 -51.93 -0.37 1.36 16 40 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 41 H 0.06 0.99 8.09 -51.92 -0.42 0.57 16 42 H 0.08 1.54 5.05 -51.93 -0.26 1.27 16 43 H 0.38 10.20 7.93 -40.82 -0.32 9.88 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 46 H 0.09 1.54 8.12 -51.92 -0.42 1.11 16 47 H 0.09 0.59 7.07 -51.93 -0.37 0.23 16 48 H 0.08 0.81 7.91 -51.93 -0.41 0.39 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -33.87 389.26 -10.28 -44.15 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.55 Total: 9.90 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.91 Total: -8.74 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.09 Total: -54.13 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.56 Total: -14.10 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.87 -10.28 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999521005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.673 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds