Wall clock time and date at job start Wed Apr 1 2020 03:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35893 * 117.00046 * 2 1 4 4 C 1.38647 * 119.95034 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.87278 * 179.97438 * 4 3 2 6 6 C 1.38175 * 119.99729 * 0.02562 * 5 4 3 7 7 C 1.38497 * 120.33182 * 359.97438 * 6 5 4 8 8 C 1.38167 * 119.88412 * 0.02562 * 7 6 5 9 9 C 1.51358 * 109.78018 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.30489 * 101.83739 * 9 8 7 11 11 C 1.50698 * 110.30402 * 223.89362 * 9 8 7 12 12 O 1.21276 * 120.00438 * 359.97438 * 11 9 8 13 13 N 1.34782 * 120.00050 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99836 * 359.97438 * 13 11 9 15 15 C 1.46499 * 120.00255 * 180.02562 * 13 11 9 16 16 C 1.53771 * 113.61673 * 135.24769 * 15 13 11 17 17 C 1.53955 * 87.02055 * 89.22930 * 16 15 13 18 18 N 1.46505 * 113.74610 * 139.94406 * 17 16 15 19 19 C 1.36936 * 119.99795 * 107.40040 * 18 17 16 20 20 H 1.07993 * 120.00381 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99681 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00026 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47184 * 59.99821 * 23 21 19 25 25 H 1.48498 * 109.47331 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46879 * 300.00001 * 23 21 19 27 27 C 1.53780 * 113.61027 * 232.85873 * 15 13 11 28 28 C 1.54349 * 105.16505 * 342.81717 * 9 8 7 29 29 C 1.51377 * 130.36392 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47113 * 60.00727 * 1 2 3 31 31 H 1.09000 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47180 * 300.00321 * 1 2 3 33 33 H 1.08002 * 120.06659 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.00304 * 180.02562 * 5 4 3 35 35 H 1.08003 * 119.83439 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.47713 * 263.98947 * 14 13 11 37 37 H 1.09005 * 109.47298 * 23.98539 * 14 13 11 38 38 H 1.08999 * 109.46965 * 143.98707 * 14 13 11 39 39 H 1.08997 * 112.84508 * 4.04933 * 15 13 11 40 40 H 1.09000 * 113.61895 * 203.74939 * 16 15 13 41 41 H 1.09009 * 113.61793 * 334.65395 * 16 15 13 42 42 H 1.08999 * 113.53807 * 270.81106 * 17 16 15 43 43 H 0.96996 * 119.99733 * 287.40272 * 18 17 16 44 44 H 0.97000 * 120.00295 * 179.97438 * 22 21 19 45 45 H 1.08995 * 113.61788 * 25.34498 * 27 15 13 46 46 H 1.09007 * 113.61231 * 156.16777 * 27 15 13 47 47 H 1.08997 * 110.82263 * 144.55960 * 28 9 8 48 48 H 1.09007 * 110.82378 * 268.11244 * 28 9 8 49 49 H 1.09003 * 110.30519 * 316.07711 * 29 7 6 50 50 H 1.09002 * 110.30029 * 78.13210 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2899 2.3730 0.0005 5 6 1.9186 3.6027 0.0011 6 6 3.2986 3.6731 0.0005 7 6 4.0579 2.5149 0.0000 8 6 3.4336 1.2823 -0.0005 9 6 4.4727 0.1818 -0.0004 10 1 4.5795 -0.2374 1.0000 11 6 4.0915 -0.8974 -0.9807 12 8 3.0708 -0.7960 -1.6278 13 7 4.8844 -1.9759 -1.1377 14 6 6.1171 -2.0988 -0.3558 15 6 4.5142 -3.0248 -2.0911 16 6 5.6852 -3.5045 -2.9647 17 6 5.9787 -4.5387 -1.8626 18 7 6.3613 -5.8561 -2.3766 19 6 7.6604 -6.2780 -2.2798 20 1 8.4029 -5.6397 -1.8242 21 6 8.0230 -7.5261 -2.7673 22 7 7.1182 -8.3038 -3.3230 23 14 9.7951 -8.1019 -2.6346 24 1 10.1960 -8.1446 -1.2054 25 1 9.9203 -9.4586 -3.2252 26 1 10.6779 -7.1598 -3.3684 27 6 4.4933 -4.4350 -1.4780 28 6 5.7849 0.8654 -0.4399 29 6 5.5601 2.3275 -0.0001 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2113 2.3168 0.0014 34 1 1.3317 4.5093 0.0019 35 1 3.7874 4.6362 0.0014 36 1 6.9594 -1.7373 -0.9458 37 1 6.0304 -1.5059 0.5548 38 1 6.2789 -3.1446 -0.0944 39 1 3.6162 -2.7824 -2.6593 40 1 5.3718 -3.9498 -3.9090 41 1 6.4722 -2.7603 -3.0872 42 1 6.6560 -4.1723 -1.0912 43 1 5.6943 -6.4296 -2.7855 44 1 7.3716 -9.1758 -3.6640 45 1 4.3194 -4.4408 -0.4021 46 1 3.8523 -5.1348 -2.0143 47 1 6.6401 0.4317 0.0784 48 1 5.9121 0.8014 -1.5206 49 1 6.0266 3.0116 -0.7090 50 1 5.9614 2.4888 1.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999521005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:41 Heat of formation + Delta-G solvation = -12.824963 kcal Electronic energy + Delta-G solvation = -30732.912241 eV Core-core repulsion = 26726.246719 eV Total energy + Delta-G solvation = -4006.665523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04997 -40.99549 -39.47263 -38.74200 -36.30292 -35.93676 -34.55674 -32.04248 -31.60391 -30.18173 -28.64909 -28.26818 -27.92516 -26.58813 -26.16488 -24.07235 -23.36421 -22.47576 -21.75698 -21.00800 -19.74715 -18.99309 -18.48087 -18.33517 -17.41009 -17.11105 -16.74777 -16.49501 -16.32066 -16.14955 -15.78899 -15.53615 -15.27862 -15.07041 -14.88483 -14.47995 -14.13016 -13.94101 -13.68714 -13.53895 -13.44823 -13.35525 -13.10228 -13.05167 -12.91683 -12.75532 -12.63788 -12.60318 -12.39445 -12.19309 -12.16120 -12.01002 -11.80472 -11.77576 -11.69903 -11.58485 -11.07773 -10.82525 -10.57972 -9.53960 -9.50462 -9.00100 -8.96715 -7.92089 -5.20947 0.35842 0.56242 1.49678 1.52683 1.58529 1.72866 2.02507 2.52727 2.58851 2.82489 3.35502 3.39233 3.51713 3.66421 3.84058 3.84704 3.95715 4.04118 4.05950 4.16291 4.18847 4.25560 4.30797 4.32794 4.35625 4.37969 4.48247 4.59831 4.66769 4.68091 4.69510 4.77708 4.83620 4.87218 4.91796 4.93970 4.96684 5.07889 5.13604 5.15065 5.19363 5.24291 5.35476 5.43403 5.52684 5.53921 5.63009 5.79697 5.94146 6.29009 6.52128 6.58594 7.30126 7.35066 8.11378 8.34548 9.31280 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.002379 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.065935 B =11765.232907 C =12735.225811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.322 6.322 3 C 0.143 3.857 4 C -0.232 4.232 5 C -0.077 4.077 6 C -0.160 4.160 7 C -0.060 4.060 8 C -0.151 4.151 9 C -0.053 4.053 10 H 0.120 0.880 11 C 0.514 3.486 12 O -0.560 6.560 13 N -0.592 5.592 14 C 0.056 3.944 15 C 0.133 3.867 16 C -0.165 4.165 17 C 0.150 3.850 18 N -0.728 5.728 19 C -0.241 4.241 20 H 0.083 0.917 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.974 3.026 24 H -0.275 1.275 25 H -0.300 1.300 26 H -0.277 1.277 27 C -0.153 4.153 28 C -0.107 4.107 29 C -0.075 4.075 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.117 0.883 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 27.640 11.819 31.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.234 6.234 3 C 0.097 3.903 4 C -0.251 4.251 5 C -0.095 4.095 6 C -0.178 4.178 7 C -0.061 4.061 8 C -0.152 4.152 9 C -0.074 4.074 10 H 0.138 0.862 11 C 0.303 3.697 12 O -0.438 6.438 13 N -0.324 5.324 14 C -0.085 4.085 15 C 0.027 3.973 16 C -0.206 4.206 17 C 0.041 3.959 18 N -0.365 5.365 19 C -0.373 4.373 20 H 0.101 0.899 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.803 3.197 24 H -0.201 1.201 25 H -0.227 1.227 26 H -0.203 1.203 27 C -0.193 4.193 28 C -0.144 4.144 29 C -0.112 4.112 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.135 0.865 48 H 0.082 0.918 49 H 0.113 0.887 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.851 27.463 11.533 30.803 hybrid contribution -0.204 -1.224 -0.668 1.410 sum -8.056 26.238 10.865 29.519 Atomic orbital electron populations 1.23159 0.77905 1.04413 1.01627 1.86224 1.22138 1.27213 1.87865 1.18968 0.91486 0.84961 0.94880 1.21381 1.00688 0.92245 1.10768 1.21191 0.94772 0.97361 0.96162 1.20822 0.93577 0.98173 1.05210 1.20785 0.97182 0.91822 0.96270 1.19631 0.90583 0.95987 1.08983 1.20762 0.95508 0.91928 0.99204 0.86229 1.21003 0.82639 0.82433 0.83618 1.90671 1.26220 1.78480 1.48413 1.47529 1.24314 1.19782 1.40814 1.22412 0.85521 1.04200 0.96368 1.21509 0.97972 0.86768 0.91026 1.24036 0.97706 0.99715 0.99170 1.22363 0.93874 0.84936 0.94720 1.42651 1.07540 1.15997 1.70322 1.19696 0.87379 0.99096 1.31096 0.89918 1.25611 1.01708 0.97694 1.02148 1.69823 1.34477 1.10978 1.47047 0.85207 0.79981 0.76642 0.77914 1.20050 1.22699 1.20336 1.23733 0.98635 0.95969 1.01004 1.22458 0.95029 0.95105 1.01857 1.21141 0.89534 0.96375 1.04114 0.92733 0.88131 0.91289 0.84163 0.83031 0.83577 0.90947 0.88082 0.90489 0.89841 0.91268 0.91428 0.88133 0.79726 0.94165 0.91079 0.90493 0.86463 0.91770 0.88731 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.32 -9.25 8.10 -70.67 -0.57 -9.82 16 3 C 0.14 3.76 6.16 22.54 0.14 3.90 16 4 C -0.23 -4.81 9.03 22.34 0.20 -4.61 16 5 C -0.08 -1.28 10.04 22.23 0.22 -1.06 16 6 C -0.16 -2.61 10.04 22.32 0.22 -2.39 16 7 C -0.06 -1.14 6.14 -19.60 -0.12 -1.26 16 8 C -0.15 -3.67 5.34 -19.50 -0.10 -3.77 16 9 C -0.05 -1.14 2.31 -11.62 -0.03 -1.17 16 10 H 0.12 2.16 7.34 -2.39 -0.02 2.14 16 11 C 0.51 15.06 6.73 87.66 0.59 15.65 16 12 O -0.56 -21.00 13.03 18.67 0.24 -20.76 16 13 N -0.59 -16.17 3.09 -819.66 -2.53 -18.71 16 14 C 0.06 1.14 7.82 127.77 1.00 2.13 16 15 C 0.13 4.31 4.48 45.51 0.20 4.52 16 16 C -0.16 -5.79 7.31 31.18 0.23 -5.56 16 17 C 0.15 5.72 3.83 45.58 0.17 5.90 16 18 N -0.73 -36.32 5.41 -320.16 -1.73 -38.05 16 19 C -0.24 -13.03 9.97 84.04 0.84 -12.19 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 23 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 C -0.15 -5.27 7.20 31.12 0.22 -5.05 16 28 C -0.11 -1.58 5.50 31.50 0.17 -1.41 16 29 C -0.08 -0.92 6.77 30.51 0.21 -0.72 16 30 H 0.05 1.02 7.66 -2.39 -0.02 1.00 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 33 H 0.14 2.33 6.29 -2.91 -0.02 2.31 16 34 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.10 1.38 5.49 -2.38 -0.01 1.37 16 38 H 0.08 1.74 4.88 -2.39 -0.01 1.73 16 39 H 0.08 3.02 7.17 -2.39 -0.02 3.00 16 40 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.07 2.23 8.09 -2.38 -0.02 2.21 16 42 H 0.10 3.51 5.05 -2.39 -0.01 3.50 16 43 H 0.37 20.25 7.93 -92.71 -0.73 19.52 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 46 H 0.08 2.80 8.12 -2.38 -0.02 2.78 16 47 H 0.12 1.04 7.07 -2.39 -0.02 1.02 16 48 H 0.06 1.16 7.91 -2.38 -0.02 1.14 16 49 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -75.47 389.26 3.70 -71.77 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.23 Total: 37.09 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.75 Total: -9.55 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -3.98 Total: -116.16 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.33 Total: -30.58 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.47 3.70 -71.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999521005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.948 kcal (2) G-P(sol) polarization free energy of solvation -75.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds