Wall clock time and date at job start Wed Apr 1 2020 03:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34772 * 120.00127 * 2 1 4 4 O 1.21282 * 120.00297 * 185.86765 * 3 2 1 5 5 C 1.50701 * 119.99949 * 5.87338 * 3 2 1 6 6 H 1.08998 * 109.82488 * 142.29683 * 5 3 2 7 7 O 1.43239 * 109.83201 * 21.40698 * 5 3 2 8 8 C 1.43645 * 109.97373 * 238.77992 * 7 5 3 9 9 C 1.54944 * 105.13543 * 24.42449 * 8 7 5 10 10 C 1.54382 * 109.82607 * 263.27829 * 5 3 2 11 11 H 1.09008 * 110.84369 * 216.34661 * 10 5 3 12 12 C 1.50701 * 110.85231 * 339.96279 * 10 5 3 13 13 C 1.38230 * 119.99796 * 70.00220 * 12 10 5 14 14 C 1.38230 * 119.99920 * 179.79007 * 13 12 10 15 15 C 1.38237 * 120.00075 * 0.46614 * 14 13 12 16 16 C 1.38232 * 119.99865 * 359.76936 * 15 14 13 17 17 C 1.38233 * 120.00056 * 0.02562 * 16 15 14 18 18 C 1.46503 * 119.99815 * 180.02562 * 2 1 3 19 19 C 1.53780 * 113.61573 * 243.56030 * 18 2 1 20 20 C 1.53783 * 87.17041 * 89.16255 * 19 18 2 21 21 N 1.46498 * 113.61700 * 270.84656 * 20 19 18 22 22 C 1.36940 * 120.00036 * 199.79541 * 21 20 19 23 23 H 1.07994 * 119.99840 * 359.97438 * 22 21 20 24 24 C 1.38815 * 119.99716 * 179.97438 * 22 21 20 25 25 N 1.31611 * 120.00215 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99394 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47279 * 60.00538 * 26 24 22 28 28 H 1.48505 * 109.46831 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47395 * 299.99778 * 26 24 22 30 30 C 1.53788 * 87.07996 * 25.39117 * 20 19 18 31 31 H 1.09008 * 109.47048 * 275.75747 * 1 2 3 32 32 H 1.09000 * 109.47551 * 35.75904 * 1 2 3 33 33 H 1.08998 * 109.47353 * 155.76743 * 1 2 3 34 34 H 1.08996 * 110.30781 * 143.34572 * 8 7 5 35 35 H 1.09000 * 110.30886 * 265.51416 * 8 7 5 36 36 H 1.09007 * 111.12249 * 81.47768 * 9 8 7 37 37 H 1.09004 * 111.12442 * 205.63190 * 9 8 7 38 38 H 1.08001 * 120.00117 * 0.02562 * 13 12 10 39 39 H 1.08005 * 120.00322 * 180.25174 * 14 13 12 40 40 H 1.07998 * 120.00267 * 179.78826 * 15 14 13 41 41 H 1.08002 * 120.00032 * 180.02562 * 16 15 14 42 42 H 1.07998 * 119.99982 * 179.97438 * 17 16 15 43 43 H 1.09006 * 112.90180 * 112.31709 * 18 2 1 44 44 H 1.08991 * 113.61553 * 334.57586 * 19 18 2 45 45 H 1.08998 * 113.61596 * 203.74644 * 19 18 2 46 46 H 1.08998 * 113.61590 * 139.93460 * 20 19 18 47 47 H 0.96996 * 119.99706 * 19.78206 * 21 20 19 48 48 H 0.96999 * 119.99986 * 179.97438 * 25 24 22 49 49 H 1.09000 * 113.61493 * 89.11477 * 30 20 19 50 50 H 1.09001 * 113.61259 * 219.93457 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3469 1.1699 -0.1074 5 6 1.3913 2.4688 0.1336 6 1 1.9642 3.1627 0.7486 7 8 0.1102 2.2346 0.7300 8 6 -0.9311 2.6819 -0.1525 9 6 -0.3065 2.6388 -1.5698 10 6 1.1506 3.0801 -1.2635 11 1 1.2277 4.1670 -1.2299 12 6 2.1091 2.5039 -2.2736 13 6 1.9802 1.1879 -2.6763 14 6 2.8568 0.6606 -3.6060 15 6 3.8682 1.4466 -4.1259 16 6 4.0001 2.7612 -3.7195 17 6 3.1209 3.2898 -2.7929 18 6 2.1974 -1.2688 -0.0006 19 6 3.0488 -1.4892 1.2610 20 6 1.8090 -2.1463 1.8903 21 7 0.9334 -1.2007 2.5869 22 6 0.0388 -1.6550 3.5189 23 1 -0.0215 -2.7103 3.7401 24 6 -0.7905 -0.7588 4.1794 25 7 -0.7166 0.5273 3.9102 26 14 -2.0113 -1.3786 5.4502 27 1 -1.2802 -2.0649 6.5455 28 1 -2.7728 -0.2311 6.0058 29 1 -2.9519 -2.3324 4.8092 30 6 1.3508 -2.4699 0.4583 31 1 -0.3633 0.1031 1.0226 32 1 -0.3634 0.8339 -0.6005 33 1 -0.3634 -0.9371 -0.4218 34 1 -1.7886 2.0114 -0.0963 35 1 -1.2288 3.6999 0.0989 36 1 -0.3331 1.6293 -1.9803 37 1 -0.7990 3.3455 -2.2378 38 1 1.1923 0.5727 -2.2674 39 1 2.7536 -0.3665 -3.9237 40 1 4.5551 1.0337 -4.8497 41 1 4.7900 3.3754 -4.1260 42 1 3.2242 4.3168 -2.4751 43 1 2.7397 -1.4451 -0.9296 44 1 3.3491 -0.5638 1.7522 45 1 3.8799 -2.1784 1.1119 46 1 2.0380 -3.0302 2.4855 47 1 0.9875 -0.2529 2.3881 48 1 -1.2964 1.1534 4.3715 49 1 1.7174 -3.4275 0.0885 50 1 0.2802 -2.3375 0.3020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999535108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:02 Heat of formation + Delta-G solvation = 31.146562 kcal Electronic energy + Delta-G solvation = -33268.630146 eV Core-core repulsion = 29263.871372 eV Total energy + Delta-G solvation = -4004.758774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27863 -39.16814 -38.45084 -37.22264 -33.88362 -33.37129 -32.90685 -30.91251 -30.30922 -29.80076 -28.80521 -26.46099 -25.05237 -24.20039 -23.67352 -22.87241 -22.48813 -22.03506 -20.74134 -19.40313 -18.05403 -17.34366 -16.80262 -16.78200 -16.12764 -15.83501 -15.33186 -15.03598 -15.01607 -14.66101 -14.54999 -14.15313 -13.92718 -13.60494 -13.48053 -13.16042 -13.07465 -12.87725 -12.58547 -12.19058 -12.00214 -11.88725 -11.61633 -11.45158 -11.31906 -11.22050 -11.13350 -10.89976 -10.84572 -10.80487 -10.78615 -10.67149 -10.19212 -9.98394 -9.88234 -9.62134 -9.46072 -8.82912 -8.78650 -8.70294 -8.60187 -7.82632 -6.87397 -5.67413 -2.97591 1.38372 1.48848 3.03418 3.45979 3.51322 3.51484 3.55874 3.81256 4.02884 4.47557 4.51593 4.63117 4.78640 4.93746 4.98834 5.02197 5.10301 5.15040 5.17347 5.23376 5.35345 5.48624 5.54662 5.57898 5.62396 5.63166 5.67207 5.79294 5.84139 5.88225 5.92382 5.98542 6.03712 6.06676 6.09820 6.20833 6.26243 6.45465 6.50390 6.56181 6.57177 6.63416 6.79082 6.83950 7.00903 7.05358 7.11595 7.12475 7.31687 7.77577 8.01404 8.49182 8.73498 9.60419 10.19684 10.57041 11.51905 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.004281 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.763651 B = 6538.835392 C = 7593.608927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.573 5.573 3 C 0.522 3.478 4 O -0.541 6.541 5 C 0.069 3.931 6 H 0.108 0.892 7 O -0.333 6.333 8 C 0.045 3.955 9 C -0.159 4.159 10 C -0.069 4.069 11 H 0.100 0.900 12 C -0.071 4.071 13 C -0.104 4.104 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.105 4.105 18 C 0.131 3.869 19 C -0.161 4.161 20 C 0.167 3.833 21 N -0.702 5.702 22 C -0.247 4.247 23 H 0.067 0.933 24 C -0.007 4.007 25 N -0.916 5.916 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.288 1.288 30 C -0.185 4.185 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.392 0.608 48 H 0.254 0.746 49 H 0.076 0.924 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 4.881 -17.201 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.306 5.306 3 C 0.309 3.691 4 O -0.420 6.420 5 C 0.007 3.993 6 H 0.125 0.875 7 O -0.251 6.251 8 C -0.032 4.032 9 C -0.196 4.196 10 C -0.088 4.088 11 H 0.118 0.882 12 C -0.071 4.071 13 C -0.122 4.122 14 C -0.132 4.132 15 C -0.139 4.139 16 C -0.139 4.139 17 C -0.123 4.123 18 C 0.027 3.973 19 C -0.200 4.200 20 C 0.054 3.946 21 N -0.343 5.343 22 C -0.378 4.378 23 H 0.085 0.915 24 C -0.204 4.204 25 N -0.563 5.563 26 Si 0.733 3.267 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.215 1.215 30 C -0.226 4.226 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.228 0.772 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.309 4.727 -16.879 17.838 hybrid contribution -0.616 0.017 0.538 0.818 sum 2.694 4.743 -16.342 17.228 Atomic orbital electron populations 1.22792 0.78882 1.00403 1.06156 1.47356 1.07277 1.04297 1.71623 1.20376 0.87588 0.85212 0.75941 1.90676 1.13819 1.87021 1.50440 1.23057 0.87401 0.94831 0.93968 0.87478 1.88959 1.12189 1.82509 1.41434 1.23420 0.92234 1.00269 0.87261 1.23670 0.94143 1.03175 0.98643 1.21655 0.94085 1.00898 0.92189 0.88151 1.19425 0.96350 0.94262 0.97084 1.21145 0.99674 0.94626 0.96787 1.21025 0.95426 0.99441 0.97315 1.21077 0.98169 0.94338 1.00280 1.21024 0.99060 0.95663 0.98120 1.20919 0.94781 0.99547 0.97090 1.21736 0.94359 0.84024 0.97154 1.23677 0.97708 1.01575 0.97082 1.21105 0.89779 0.93282 0.90393 1.42315 1.41269 1.05831 1.44853 1.19179 1.12007 0.92646 1.13955 0.91462 1.24715 1.00089 0.95419 1.00167 1.69687 1.41440 1.00380 1.44800 0.86374 0.81304 0.77237 0.81806 1.21508 1.21829 1.21472 1.24262 1.00653 0.95494 1.02200 0.87573 0.91046 0.93132 0.88865 0.91773 0.89269 0.89390 0.85727 0.86463 0.86529 0.86405 0.86362 0.91637 0.91170 0.90205 0.92486 0.77153 0.93569 0.90589 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 6.45 59.84 0.39 1.41 16 2 N -0.57 -10.18 1.12 -172.90 -0.19 -10.38 16 3 C 0.52 9.64 3.83 -10.99 -0.04 9.60 16 4 O -0.54 -11.35 15.36 5.56 0.09 -11.26 16 5 C 0.07 1.11 3.82 -27.16 -0.10 1.01 16 6 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 7 O -0.33 -5.79 8.03 -35.23 -0.28 -6.07 16 8 C 0.04 0.57 6.54 38.18 0.25 0.82 16 9 C -0.16 -1.70 5.86 -24.49 -0.14 -1.85 16 10 C -0.07 -0.86 3.18 -89.83 -0.29 -1.14 16 11 H 0.10 1.04 8.02 -51.92 -0.42 0.62 16 12 C -0.07 -0.94 3.87 -104.62 -0.40 -1.35 16 13 C -0.10 -1.43 6.68 -39.59 -0.26 -1.70 16 14 C -0.11 -1.46 10.05 -39.58 -0.40 -1.86 16 15 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 16 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 17 C -0.11 -1.31 9.69 -39.58 -0.38 -1.69 16 18 C 0.13 2.31 4.09 -67.03 -0.27 2.03 16 19 C -0.16 -3.07 7.15 -25.92 -0.19 -3.26 16 20 C 0.17 3.46 4.55 -67.11 -0.31 3.15 16 21 N -0.70 -17.47 4.11 -52.63 -0.22 -17.69 16 22 C -0.25 -6.72 9.98 -15.06 -0.15 -6.87 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 25 N -0.92 -26.45 13.06 55.49 0.72 -25.73 16 26 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 C -0.18 -3.21 7.15 -25.83 -0.18 -3.39 16 31 H 0.11 2.32 5.71 -51.92 -0.30 2.03 16 32 H 0.07 1.04 1.56 -51.93 -0.08 0.96 16 33 H 0.05 0.82 6.10 -51.93 -0.32 0.51 16 34 H 0.09 1.16 7.70 -51.93 -0.40 0.76 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.99 4.61 -51.93 -0.24 0.75 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.12 1.74 4.56 -52.49 -0.24 1.50 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.23 8.03 -52.49 -0.42 0.81 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.07 1.56 7.39 -51.93 -0.38 1.17 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 47 H 0.39 10.37 5.64 -40.82 -0.23 10.14 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.08 1.44 5.75 -51.93 -0.30 1.14 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -31.84 373.41 -9.76 -41.60 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -7.10 Total: 15.94 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.38 Total: -9.01 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.31 Total: -53.79 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.20 Total: -17.34 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.84 -9.76 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999535108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.748 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds