Wall clock time and date at job start Wed Apr 1 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34772 * 120.00127 * 2 1 4 4 O 1.21282 * 120.00297 * 185.86765 * 3 2 1 5 5 C 1.50701 * 119.99949 * 5.87338 * 3 2 1 6 6 H 1.08998 * 109.82488 * 142.29683 * 5 3 2 7 7 O 1.43239 * 109.83201 * 21.40698 * 5 3 2 8 8 C 1.43645 * 109.97373 * 238.77992 * 7 5 3 9 9 C 1.54944 * 105.13543 * 24.42449 * 8 7 5 10 10 C 1.54382 * 109.82607 * 263.27829 * 5 3 2 11 11 H 1.09008 * 110.84369 * 216.34661 * 10 5 3 12 12 C 1.50701 * 110.85231 * 339.96279 * 10 5 3 13 13 C 1.38230 * 119.99796 * 70.00220 * 12 10 5 14 14 C 1.38230 * 119.99920 * 179.79007 * 13 12 10 15 15 C 1.38237 * 120.00075 * 0.46614 * 14 13 12 16 16 C 1.38232 * 119.99865 * 359.76936 * 15 14 13 17 17 C 1.38233 * 120.00056 * 0.02562 * 16 15 14 18 18 C 1.46503 * 119.99815 * 180.02562 * 2 1 3 19 19 C 1.53780 * 113.61573 * 243.56030 * 18 2 1 20 20 C 1.53783 * 87.17041 * 89.16255 * 19 18 2 21 21 N 1.46498 * 113.61700 * 270.84656 * 20 19 18 22 22 C 1.36940 * 120.00036 * 199.79541 * 21 20 19 23 23 H 1.07994 * 119.99840 * 359.97438 * 22 21 20 24 24 C 1.38815 * 119.99716 * 179.97438 * 22 21 20 25 25 N 1.31611 * 120.00215 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99394 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47279 * 60.00538 * 26 24 22 28 28 H 1.48505 * 109.46831 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47395 * 299.99778 * 26 24 22 30 30 C 1.53788 * 87.07996 * 25.39117 * 20 19 18 31 31 H 1.09008 * 109.47048 * 275.75747 * 1 2 3 32 32 H 1.09000 * 109.47551 * 35.75904 * 1 2 3 33 33 H 1.08998 * 109.47353 * 155.76743 * 1 2 3 34 34 H 1.08996 * 110.30781 * 143.34572 * 8 7 5 35 35 H 1.09000 * 110.30886 * 265.51416 * 8 7 5 36 36 H 1.09007 * 111.12249 * 81.47768 * 9 8 7 37 37 H 1.09004 * 111.12442 * 205.63190 * 9 8 7 38 38 H 1.08001 * 120.00117 * 0.02562 * 13 12 10 39 39 H 1.08005 * 120.00322 * 180.25174 * 14 13 12 40 40 H 1.07998 * 120.00267 * 179.78826 * 15 14 13 41 41 H 1.08002 * 120.00032 * 180.02562 * 16 15 14 42 42 H 1.07998 * 119.99982 * 179.97438 * 17 16 15 43 43 H 1.09006 * 112.90180 * 112.31709 * 18 2 1 44 44 H 1.08991 * 113.61553 * 334.57586 * 19 18 2 45 45 H 1.08998 * 113.61596 * 203.74644 * 19 18 2 46 46 H 1.08998 * 113.61590 * 139.93460 * 20 19 18 47 47 H 0.96996 * 119.99706 * 19.78206 * 21 20 19 48 48 H 0.96999 * 119.99986 * 179.97438 * 25 24 22 49 49 H 1.09000 * 113.61493 * 89.11477 * 30 20 19 50 50 H 1.09001 * 113.61259 * 219.93457 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 3.3469 1.1699 -0.1074 5 6 1.3913 2.4688 0.1336 6 1 1.9642 3.1627 0.7486 7 8 0.1102 2.2346 0.7300 8 6 -0.9311 2.6819 -0.1525 9 6 -0.3065 2.6388 -1.5698 10 6 1.1506 3.0801 -1.2635 11 1 1.2277 4.1670 -1.2299 12 6 2.1091 2.5039 -2.2736 13 6 1.9802 1.1879 -2.6763 14 6 2.8568 0.6606 -3.6060 15 6 3.8682 1.4466 -4.1259 16 6 4.0001 2.7612 -3.7195 17 6 3.1209 3.2898 -2.7929 18 6 2.1974 -1.2688 -0.0006 19 6 3.0488 -1.4892 1.2610 20 6 1.8090 -2.1463 1.8903 21 7 0.9334 -1.2007 2.5869 22 6 0.0388 -1.6550 3.5189 23 1 -0.0215 -2.7103 3.7401 24 6 -0.7905 -0.7588 4.1794 25 7 -0.7166 0.5273 3.9102 26 14 -2.0113 -1.3786 5.4502 27 1 -1.2802 -2.0649 6.5455 28 1 -2.7728 -0.2311 6.0058 29 1 -2.9519 -2.3324 4.8092 30 6 1.3508 -2.4699 0.4583 31 1 -0.3633 0.1031 1.0226 32 1 -0.3634 0.8339 -0.6005 33 1 -0.3634 -0.9371 -0.4218 34 1 -1.7886 2.0114 -0.0963 35 1 -1.2288 3.6999 0.0989 36 1 -0.3331 1.6293 -1.9803 37 1 -0.7990 3.3455 -2.2378 38 1 1.1923 0.5727 -2.2674 39 1 2.7536 -0.3665 -3.9237 40 1 4.5551 1.0337 -4.8497 41 1 4.7900 3.3754 -4.1260 42 1 3.2242 4.3168 -2.4751 43 1 2.7397 -1.4451 -0.9296 44 1 3.3491 -0.5638 1.7522 45 1 3.8799 -2.1784 1.1119 46 1 2.0380 -3.0302 2.4855 47 1 0.9875 -0.2529 2.3881 48 1 -1.2964 1.1534 4.3715 49 1 1.7174 -3.4275 0.0885 50 1 0.2802 -2.3375 0.3020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999535108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:01 Heat of formation + Delta-G solvation = 13.849914 kcal Electronic energy + Delta-G solvation = -33269.380185 eV Core-core repulsion = 29263.871372 eV Total energy + Delta-G solvation = -4005.508813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.50135 -40.51616 -39.47400 -38.70476 -35.57729 -34.66930 -34.40489 -31.83808 -31.78808 -31.31280 -29.88956 -27.90362 -26.68588 -25.62225 -25.29992 -23.87857 -23.82220 -23.06792 -21.89476 -20.67941 -19.55263 -19.19543 -18.09748 -17.84134 -17.39308 -17.13938 -16.80252 -16.50513 -16.22013 -16.03838 -15.70338 -15.41915 -15.33285 -15.15911 -14.78775 -14.54918 -14.39003 -14.06973 -13.81079 -13.53598 -13.28975 -13.12297 -13.05556 -12.93329 -12.71274 -12.54623 -12.45466 -12.36038 -12.23395 -12.14039 -12.12642 -11.83165 -11.75812 -11.61454 -11.59019 -11.17455 -11.01756 -10.76048 -10.07196 -9.73514 -9.54580 -9.28015 -8.87000 -7.78693 -5.09064 0.45530 0.56122 1.50635 1.52382 1.58101 1.65943 2.19476 2.61987 2.86742 2.90649 3.40356 3.47620 3.54917 3.63141 3.74995 3.82474 3.94919 3.99982 4.02250 4.15053 4.21717 4.26035 4.28700 4.31863 4.38803 4.43176 4.46889 4.58676 4.68472 4.71719 4.83444 4.84392 4.87022 4.92161 4.93368 5.01565 5.10423 5.13341 5.16313 5.19690 5.31011 5.46142 5.55523 5.60088 5.63175 5.66248 5.69724 5.84334 6.01835 6.17355 6.38742 6.59725 7.31156 7.45943 8.22698 8.49598 9.40109 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.004281 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.763651 B = 6538.835392 C = 7593.608927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.571 5.571 3 C 0.520 3.480 4 O -0.572 6.572 5 C 0.065 3.935 6 H 0.094 0.906 7 O -0.367 6.367 8 C 0.036 3.964 9 C -0.145 4.145 10 C -0.060 4.060 11 H 0.123 0.877 12 C -0.084 4.084 13 C -0.120 4.120 14 C -0.128 4.128 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.117 4.117 18 C 0.131 3.869 19 C -0.154 4.154 20 C 0.146 3.854 21 N -0.714 5.714 22 C -0.250 4.250 23 H 0.069 0.931 24 C -0.059 4.059 25 N -0.943 5.943 26 Si 0.963 3.037 27 H -0.288 1.288 28 H -0.298 1.298 29 H -0.279 1.279 30 C -0.161 4.161 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.032 0.968 45 H 0.108 0.892 46 H 0.057 0.943 47 H 0.382 0.618 48 H 0.247 0.753 49 H 0.112 0.888 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 4.506 -19.249 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.302 5.302 3 C 0.308 3.692 4 O -0.453 6.453 5 C 0.003 3.997 6 H 0.112 0.888 7 O -0.286 6.286 8 C -0.040 4.040 9 C -0.182 4.182 10 C -0.079 4.079 11 H 0.141 0.859 12 C -0.085 4.085 13 C -0.138 4.138 14 C -0.146 4.146 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.135 4.135 18 C 0.028 3.972 19 C -0.193 4.193 20 C 0.036 3.964 21 N -0.354 5.354 22 C -0.382 4.382 23 H 0.087 0.913 24 C -0.253 4.253 25 N -0.591 5.591 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.224 1.224 29 H -0.205 1.205 30 C -0.202 4.202 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.126 0.874 46 H 0.075 0.925 47 H 0.216 0.784 48 H 0.056 0.944 49 H 0.130 0.870 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.254 4.305 -18.949 19.702 hybrid contribution -0.513 0.094 1.185 1.294 sum 2.741 4.399 -17.764 18.504 Atomic orbital electron populations 1.22643 0.78604 1.01933 1.03934 1.47376 1.07388 1.04351 1.71110 1.20771 0.87347 0.86041 0.75014 1.90639 1.15075 1.87571 1.52016 1.23042 0.86862 0.93536 0.96225 0.88784 1.88944 1.13327 1.83007 1.43325 1.23646 0.91284 1.01062 0.87999 1.23612 0.93017 1.03864 0.97729 1.21675 0.94843 1.01872 0.89519 0.85901 1.19554 0.97013 0.94431 0.97467 1.21193 1.00077 0.94950 0.97539 1.21284 0.95662 1.00318 0.97378 1.21415 0.98140 0.94459 1.00436 1.21393 0.99362 0.96026 0.97713 1.21242 0.94584 1.00485 0.97221 1.21811 0.94139 0.84217 0.97048 1.23657 0.98054 1.00283 0.97354 1.21401 0.90344 0.92776 0.91900 1.42396 1.41733 1.05989 1.45272 1.19483 1.12053 0.92721 1.13975 0.91260 1.25385 1.02049 0.95658 1.02250 1.69860 1.42220 1.01237 1.45808 0.85396 0.79292 0.76491 0.79514 1.21457 1.22409 1.20529 1.24073 1.00181 0.97023 0.98904 0.91948 0.88484 0.92335 0.88987 0.90123 0.89700 0.86053 0.86526 0.85294 0.84280 0.84042 0.84672 0.90048 0.94868 0.87402 0.92504 0.78351 0.94352 0.87005 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.46 6.45 127.77 0.82 3.29 16 2 N -0.57 -20.42 1.12 -819.32 -0.92 -21.34 16 3 C 0.52 19.57 3.83 87.66 0.34 19.90 16 4 O -0.57 -24.44 15.36 -3.03 -0.05 -24.48 16 5 C 0.06 2.13 3.82 30.32 0.12 2.25 16 6 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 7 O -0.37 -13.13 8.03 -148.98 -1.20 -14.33 16 8 C 0.04 0.89 6.54 72.65 0.48 1.36 16 9 C -0.15 -2.86 5.86 32.05 0.19 -2.67 16 10 C -0.06 -1.42 3.18 -10.28 -0.03 -1.45 16 11 H 0.12 2.30 8.02 -2.38 -0.02 2.28 16 12 C -0.08 -2.14 3.87 -19.87 -0.08 -2.22 16 13 C -0.12 -3.16 6.68 22.27 0.15 -3.01 16 14 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 15 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 16 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 17 C -0.12 -2.71 9.69 22.27 0.22 -2.50 16 18 C 0.13 4.52 4.09 45.57 0.19 4.71 16 19 C -0.15 -5.85 7.15 31.12 0.22 -5.63 16 20 C 0.15 6.03 4.55 45.52 0.21 6.24 16 21 N -0.71 -36.31 4.11 -320.44 -1.32 -37.63 16 22 C -0.25 -13.84 9.98 84.03 0.84 -13.00 16 23 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 24 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 25 N -0.94 -56.04 13.06 21.65 0.28 -55.76 16 26 Si 0.96 45.84 29.55 68.60 2.03 47.87 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 30 C -0.16 -5.33 7.15 31.18 0.22 -5.11 16 31 H 0.06 2.83 5.71 -2.38 -0.01 2.81 16 32 H 0.10 2.84 1.56 -2.39 0.00 2.84 16 33 H 0.06 1.90 6.10 -2.39 -0.01 1.88 16 34 H 0.09 2.28 7.70 -2.39 -0.02 2.26 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.76 4.61 -2.38 -0.01 1.75 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.12 3.17 4.56 -2.91 -0.01 3.16 16 39 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.14 2.53 8.03 -2.91 -0.02 2.51 16 43 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 44 H 0.03 1.50 7.39 -2.39 -0.02 1.48 16 45 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 46 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 47 H 0.38 20.98 5.64 -92.71 -0.52 20.45 16 48 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 50 H 0.07 2.48 5.75 -2.39 -0.01 2.47 16 Total: -1.00 -70.95 373.41 4.29 -66.66 By element: Atomic # 1 Polarization: 47.15 SS G_CDS: 0.45 Total: 47.60 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 5.01 Total: -8.58 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -1.96 Total: -114.74 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.24 Total: -38.81 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.95 4.29 -66.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999535108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.513 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds