Wall clock time and date at job start Wed Apr 1 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35706 * 116.99964 * 2 1 4 4 C 1.39019 * 119.91250 * 0.02562 * 3 2 1 5 5 C 1.37680 * 120.08519 * 179.74214 * 4 3 2 6 6 C 1.39756 * 119.91264 * 0.53492 * 5 4 3 7 7 C 1.47607 * 120.08735 * 179.71555 * 6 5 4 8 8 O 1.21581 * 119.99975 * 41.31603 * 7 6 5 9 9 N 1.34778 * 119.99727 * 221.31545 * 7 6 5 10 10 C 1.46492 * 120.00405 * 355.48575 * 9 7 6 11 11 C 1.46509 * 119.99620 * 175.48898 * 9 7 6 12 12 C 1.53777 * 113.61185 * 239.99673 * 11 9 7 13 13 C 1.53777 * 87.07989 * 220.01923 * 12 11 9 14 14 N 1.46499 * 113.61425 * 139.98495 * 13 12 11 15 15 C 1.36933 * 120.00537 * 154.72402 * 14 13 12 16 16 H 1.08010 * 119.99475 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00797 * 179.97438 * 15 14 13 18 18 N 1.31613 * 120.00497 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99615 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47422 * 89.99759 * 19 17 15 21 21 H 1.48501 * 109.47245 * 209.99707 * 19 17 15 22 22 H 1.48499 * 109.47358 * 330.00092 * 19 17 15 23 23 C 1.53773 * 87.08019 * 25.43535 * 13 12 11 24 24 C 1.39709 * 119.82526 * 359.44840 * 6 5 4 25 25 C 1.37724 * 119.90852 * 0.27207 * 24 6 5 26 26 C 1.50706 * 119.95411 * 180.02562 * 25 24 6 27 27 C 1.52991 * 117.50083 * 8.61920 * 26 25 24 28 28 C 1.52988 * 60.00043 * 252.51155 * 27 26 25 29 29 H 1.09007 * 109.46697 * 60.00507 * 1 2 3 30 30 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47344 * 300.00532 * 1 2 3 32 32 H 1.07994 * 119.95438 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.04462 * 180.27827 * 5 4 3 34 34 H 1.09005 * 109.47216 * 275.15221 * 10 9 7 35 35 H 1.09000 * 109.47270 * 35.14661 * 10 9 7 36 36 H 1.09000 * 109.47639 * 155.15469 * 10 9 7 37 37 H 1.09000 * 112.90341 * 11.24651 * 11 9 7 38 38 H 1.09002 * 113.61376 * 105.46975 * 12 11 9 39 39 H 1.09003 * 113.61484 * 334.56854 * 12 11 9 40 40 H 1.09000 * 113.61292 * 270.79944 * 13 12 11 41 41 H 0.97002 * 120.00069 * 334.99486 * 14 13 12 42 42 H 0.97006 * 119.99948 * 180.02562 * 18 17 15 43 43 H 1.08999 * 113.62033 * 89.11840 * 23 13 12 44 44 H 1.09002 * 113.61226 * 220.01846 * 23 13 12 45 45 H 1.07998 * 120.04759 * 180.29312 * 24 6 5 46 46 H 1.09004 * 115.54839 * 154.32966 * 26 25 24 47 47 H 1.09004 * 117.50050 * 0.02562 * 27 26 25 48 48 H 1.09007 * 117.50020 * 145.01678 * 27 26 25 49 49 H 1.09004 * 117.50119 * 252.50586 * 28 27 26 50 50 H 1.09004 * 117.52249 * 107.48520 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6025 0.0059 6 6 3.3031 3.6778 -0.0005 7 6 3.9732 4.9930 -0.0011 8 8 3.5478 5.8923 0.6978 9 7 5.0566 5.1968 -0.7764 10 6 5.6285 4.0869 -1.5426 11 6 5.6624 6.5286 -0.8530 12 6 5.6773 7.1178 -2.2733 13 6 7.0857 7.6465 -1.9544 14 7 8.0242 7.5279 -3.0730 15 6 9.0986 8.3726 -3.1579 16 1 9.2539 9.1266 -2.4003 17 6 9.9883 8.2599 -4.2175 18 7 11.0206 9.0722 -4.2993 19 14 9.7193 6.9563 -5.5281 20 1 8.8789 7.5154 -6.6173 21 1 11.0306 6.5335 -6.0821 22 1 9.0346 5.7838 -4.9269 23 6 7.1979 6.5032 -0.9323 24 6 4.0622 2.5049 -0.0007 25 6 3.4331 1.2798 -0.0002 26 6 4.2510 0.0139 0.0002 27 6 5.7613 0.1488 0.2035 28 6 5.2042 -0.2116 -1.1750 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2079 2.3149 0.0014 33 1 1.3173 4.5069 0.0109 34 1 6.3142 3.5236 -0.9095 35 1 4.8280 3.4309 -1.8846 36 1 6.1690 4.4800 -2.4036 37 1 5.2753 7.2147 -0.0996 38 1 4.9397 7.9055 -2.4270 39 1 5.6619 6.3628 -3.0594 40 1 7.0878 8.6389 -1.5036 41 1 7.8825 6.8535 -3.7557 42 1 11.6421 8.9936 -5.0400 43 1 7.5983 5.5802 -1.3516 44 1 7.6880 6.7946 -0.0032 45 1 5.1408 2.5589 -0.0008 46 1 3.7616 -0.8618 0.4266 47 1 6.1635 1.1530 0.3373 48 1 6.2661 -0.6382 0.7639 49 1 5.3423 -1.2358 -1.5217 50 1 5.2395 0.5553 -1.9488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999614436.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:46 Heat of formation + Delta-G solvation = 30.700016 kcal Electronic energy + Delta-G solvation = -30072.932532 eV Core-core repulsion = 26068.154394 eV Total energy + Delta-G solvation = -4004.778138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09200 -40.04159 -38.46123 -37.96498 -36.51854 -34.96758 -33.19343 -31.17015 -30.95032 -30.24136 -27.87608 -27.19860 -25.28720 -24.96188 -24.29880 -23.40634 -22.65903 -21.87641 -20.79661 -19.56465 -19.08259 -18.48118 -17.61818 -17.36296 -16.67500 -16.54815 -16.17742 -15.58116 -15.40861 -14.99883 -14.89863 -14.67152 -14.47277 -14.14130 -13.79360 -13.43987 -13.32462 -12.99524 -12.90679 -12.71885 -12.52089 -12.34344 -12.24171 -12.05842 -11.94462 -11.75756 -11.69993 -11.47146 -11.22832 -11.06163 -11.01242 -10.70851 -10.64684 -10.55583 -10.20558 -10.09973 -9.79655 -9.59160 -9.14260 -8.95113 -8.58997 -8.39718 -7.31542 -5.81199 -3.17333 0.72194 0.91846 2.60241 2.80337 2.95647 3.32518 3.33783 3.35644 3.41766 3.72364 4.11377 4.31040 4.39444 4.53957 4.54324 4.61668 4.69169 4.72388 4.77930 4.88581 4.95702 4.98718 5.03360 5.04246 5.06007 5.16677 5.24174 5.34142 5.36754 5.41935 5.48517 5.54866 5.62275 5.66167 5.69700 5.74058 5.80559 5.89334 5.95540 6.05539 6.08217 6.12639 6.19801 6.25918 6.33098 6.46577 6.66741 6.89630 6.92483 7.40942 7.94823 8.12880 8.38204 9.15342 9.87704 10.07191 11.36915 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002489 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.906795 B =11247.778911 C =12290.613427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.153 3.847 4 C -0.213 4.213 5 C -0.030 4.030 6 C -0.159 4.159 7 C 0.561 3.439 8 O -0.540 6.540 9 N -0.593 5.593 10 C 0.070 3.930 11 C 0.117 3.883 12 C -0.166 4.166 13 C 0.176 3.824 14 N -0.734 5.734 15 C -0.248 4.248 16 H 0.092 0.908 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.174 4.174 24 C -0.056 4.056 25 C -0.090 4.090 26 C -0.106 4.106 27 C -0.178 4.178 28 C -0.168 4.168 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.143 0.857 46 H 0.116 0.884 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.167 -22.024 8.821 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.107 3.893 4 C -0.231 4.231 5 C -0.049 4.049 6 C -0.162 4.162 7 C 0.349 3.651 8 O -0.418 6.418 9 N -0.324 5.324 10 C -0.073 4.073 11 C 0.014 3.986 12 C -0.207 4.207 13 C 0.064 3.936 14 N -0.373 5.373 15 C -0.378 4.378 16 H 0.110 0.890 17 C -0.191 4.191 18 N -0.579 5.579 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.216 4.216 24 C -0.075 4.075 25 C -0.091 4.091 26 C -0.124 4.124 27 C -0.215 4.215 28 C -0.205 4.205 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.160 0.840 46 H 0.134 0.866 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.085 -21.534 9.189 31.508 hybrid contribution -0.339 -0.899 -1.048 1.422 sum -21.424 -22.433 8.140 32.070 Atomic orbital electron populations 1.23121 0.78158 1.04152 1.01618 1.86040 1.21493 1.26718 1.87995 1.18964 0.91479 0.84295 0.94591 1.21149 1.00260 0.91782 1.09938 1.20941 0.92871 0.97602 0.93436 1.19785 0.94239 0.93144 1.09060 1.18254 0.79988 0.87295 0.79521 1.90772 1.65030 1.44731 1.41273 1.47747 1.28770 1.10783 1.45063 1.22059 0.98973 0.89502 0.96743 1.22635 0.94339 0.83008 0.98654 1.23967 1.00026 1.00489 0.96168 1.21319 0.87402 0.96176 0.88712 1.42699 1.28393 1.40267 1.25973 1.19141 0.99928 1.10616 1.08135 0.89025 1.24698 0.97187 0.98767 0.98453 1.69700 1.15537 1.39737 1.32919 0.86553 0.77120 0.82119 0.82700 1.21058 1.21694 1.20387 1.24296 0.92989 1.02475 1.01835 1.21325 1.00622 0.90060 0.95459 1.18364 0.89903 0.94068 1.06728 1.20782 0.90804 0.96595 1.04265 1.23098 0.95023 1.03340 1.00042 1.23041 1.02796 1.03001 0.91679 0.92402 0.88073 0.92418 0.84734 0.84807 0.92398 0.90901 0.90050 0.86426 0.91316 0.90302 0.89334 0.80527 0.92999 0.89983 0.91578 0.83997 0.86558 0.88430 0.88245 0.88393 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.59 9.65 -18.82 -0.18 -2.77 16 3 C 0.15 1.44 6.67 -39.02 -0.26 1.18 16 4 C -0.21 -1.88 9.01 -39.50 -0.36 -2.24 16 5 C -0.03 -0.31 9.64 -39.22 -0.38 -0.69 16 6 C -0.16 -1.89 5.15 -104.96 -0.54 -2.43 16 7 C 0.56 8.10 7.32 -12.44 -0.09 8.01 16 8 O -0.54 -9.55 16.42 5.29 0.09 -9.46 16 9 N -0.59 -7.95 3.08 -174.21 -0.54 -8.49 16 10 C 0.07 0.76 7.63 59.84 0.46 1.21 16 11 C 0.12 1.73 4.22 -67.12 -0.28 1.45 16 12 C -0.17 -2.58 7.35 -25.92 -0.19 -2.77 16 13 C 0.18 3.25 4.48 -67.12 -0.30 2.95 16 14 N -0.73 -16.74 5.20 -52.64 -0.27 -17.02 16 15 C -0.25 -6.85 10.45 -15.06 -0.16 -7.01 16 16 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 17 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -28.91 13.97 55.49 0.78 -28.13 16 19 Si 0.88 21.59 27.73 -169.99 -4.71 16.88 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.27 6.52 56.52 0.37 -5.91 16 23 C -0.17 -2.80 7.28 -25.93 -0.19 -2.99 16 24 C -0.06 -0.58 6.86 -39.22 -0.27 -0.85 16 25 C -0.09 -0.87 5.62 -104.53 -0.59 -1.46 16 26 C -0.11 -0.89 5.74 -91.78 -0.53 -1.41 16 27 C -0.18 -1.32 9.85 -26.74 -0.26 -1.58 16 28 C -0.17 -1.24 10.16 -26.74 -0.27 -1.51 16 29 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 32 H 0.13 0.85 6.28 -52.49 -0.33 0.52 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.06 0.54 6.85 -51.93 -0.36 0.19 16 35 H 0.07 0.69 5.99 -51.93 -0.31 0.38 16 36 H 0.08 0.92 6.14 -51.93 -0.32 0.60 16 37 H 0.12 1.84 7.22 -51.93 -0.37 1.47 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.20 6.97 -51.93 -0.36 0.83 16 40 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 41 H 0.36 8.05 5.79 -40.82 -0.24 7.82 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.08 1.31 6.60 -51.93 -0.34 0.97 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.14 1.31 3.48 -52.49 -0.18 1.13 16 46 H 0.12 0.95 7.76 -51.93 -0.40 0.55 16 47 H 0.10 0.73 6.17 -51.93 -0.32 0.41 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -33.60 395.46 -9.50 -43.11 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.30 Total: 8.91 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.31 Total: -8.98 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.04 Total: -53.64 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.60 -9.50 -43.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999614436.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.806 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds