Wall clock time and date at job start Wed Apr 1 2020 03:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35706 * 116.99964 * 2 1 4 4 C 1.39019 * 119.91250 * 0.02562 * 3 2 1 5 5 C 1.37680 * 120.08519 * 179.74214 * 4 3 2 6 6 C 1.39756 * 119.91264 * 0.53492 * 5 4 3 7 7 C 1.47607 * 120.08735 * 179.71555 * 6 5 4 8 8 O 1.21581 * 119.99975 * 41.31603 * 7 6 5 9 9 N 1.34778 * 119.99727 * 221.31545 * 7 6 5 10 10 C 1.46492 * 120.00405 * 355.48575 * 9 7 6 11 11 C 1.46509 * 119.99620 * 175.48898 * 9 7 6 12 12 C 1.53777 * 113.61185 * 239.99673 * 11 9 7 13 13 C 1.53777 * 87.07989 * 220.01923 * 12 11 9 14 14 N 1.46499 * 113.61425 * 139.98495 * 13 12 11 15 15 C 1.36933 * 120.00537 * 154.72402 * 14 13 12 16 16 H 1.08010 * 119.99475 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00797 * 179.97438 * 15 14 13 18 18 N 1.31613 * 120.00497 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99615 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47422 * 89.99759 * 19 17 15 21 21 H 1.48501 * 109.47245 * 209.99707 * 19 17 15 22 22 H 1.48499 * 109.47358 * 330.00092 * 19 17 15 23 23 C 1.53773 * 87.08019 * 25.43535 * 13 12 11 24 24 C 1.39709 * 119.82526 * 359.44840 * 6 5 4 25 25 C 1.37724 * 119.90852 * 0.27207 * 24 6 5 26 26 C 1.50706 * 119.95411 * 180.02562 * 25 24 6 27 27 C 1.52991 * 117.50083 * 8.61920 * 26 25 24 28 28 C 1.52988 * 60.00043 * 252.51155 * 27 26 25 29 29 H 1.09007 * 109.46697 * 60.00507 * 1 2 3 30 30 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47344 * 300.00532 * 1 2 3 32 32 H 1.07994 * 119.95438 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.04462 * 180.27827 * 5 4 3 34 34 H 1.09005 * 109.47216 * 275.15221 * 10 9 7 35 35 H 1.09000 * 109.47270 * 35.14661 * 10 9 7 36 36 H 1.09000 * 109.47639 * 155.15469 * 10 9 7 37 37 H 1.09000 * 112.90341 * 11.24651 * 11 9 7 38 38 H 1.09002 * 113.61376 * 105.46975 * 12 11 9 39 39 H 1.09003 * 113.61484 * 334.56854 * 12 11 9 40 40 H 1.09000 * 113.61292 * 270.79944 * 13 12 11 41 41 H 0.97002 * 120.00069 * 334.99486 * 14 13 12 42 42 H 0.97006 * 119.99948 * 180.02562 * 18 17 15 43 43 H 1.08999 * 113.62033 * 89.11840 * 23 13 12 44 44 H 1.09002 * 113.61226 * 220.01846 * 23 13 12 45 45 H 1.07998 * 120.04759 * 180.29312 * 24 6 5 46 46 H 1.09004 * 115.54839 * 154.32966 * 26 25 24 47 47 H 1.09004 * 117.50050 * 0.02562 * 27 26 25 48 48 H 1.09007 * 117.50020 * 145.01678 * 27 26 25 49 49 H 1.09004 * 117.50119 * 252.50586 * 28 27 26 50 50 H 1.09004 * 117.52249 * 107.48520 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6025 0.0059 6 6 3.3031 3.6778 -0.0005 7 6 3.9732 4.9930 -0.0011 8 8 3.5478 5.8923 0.6978 9 7 5.0566 5.1968 -0.7764 10 6 5.6285 4.0869 -1.5426 11 6 5.6624 6.5286 -0.8530 12 6 5.6773 7.1178 -2.2733 13 6 7.0857 7.6465 -1.9544 14 7 8.0242 7.5279 -3.0730 15 6 9.0986 8.3726 -3.1579 16 1 9.2539 9.1266 -2.4003 17 6 9.9883 8.2599 -4.2175 18 7 11.0206 9.0722 -4.2993 19 14 9.7193 6.9563 -5.5281 20 1 8.8789 7.5154 -6.6173 21 1 11.0306 6.5335 -6.0821 22 1 9.0346 5.7838 -4.9269 23 6 7.1979 6.5032 -0.9323 24 6 4.0622 2.5049 -0.0007 25 6 3.4331 1.2798 -0.0002 26 6 4.2510 0.0139 0.0002 27 6 5.7613 0.1488 0.2035 28 6 5.2042 -0.2116 -1.1750 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2079 2.3149 0.0014 33 1 1.3173 4.5069 0.0109 34 1 6.3142 3.5236 -0.9095 35 1 4.8280 3.4309 -1.8846 36 1 6.1690 4.4800 -2.4036 37 1 5.2753 7.2147 -0.0996 38 1 4.9397 7.9055 -2.4270 39 1 5.6619 6.3628 -3.0594 40 1 7.0878 8.6389 -1.5036 41 1 7.8825 6.8535 -3.7557 42 1 11.6421 8.9936 -5.0400 43 1 7.5983 5.5802 -1.3516 44 1 7.6880 6.7946 -0.0032 45 1 5.1408 2.5589 -0.0008 46 1 3.7616 -0.8618 0.4266 47 1 6.1635 1.1530 0.3373 48 1 6.2661 -0.6382 0.7639 49 1 5.3423 -1.2358 -1.5217 50 1 5.2395 0.5553 -1.9488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999614436.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:45 Heat of formation + Delta-G solvation = 10.683350 kcal Electronic energy + Delta-G solvation = -30073.800519 eV Core-core repulsion = 26068.154394 eV Total energy + Delta-G solvation = -4005.646126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.93634 -41.00761 -39.55588 -38.75283 -37.25084 -36.33671 -34.92531 -32.67495 -31.84806 -31.30925 -28.42770 -28.10121 -26.68206 -26.37129 -25.03822 -24.67925 -23.35649 -22.94799 -21.69430 -20.81931 -20.23548 -19.36851 -19.11541 -18.47981 -17.74438 -17.38416 -16.73996 -16.54410 -16.45482 -16.23709 -15.99414 -15.68458 -15.46549 -15.23242 -14.75686 -14.72500 -14.55597 -14.16199 -13.81897 -13.76754 -13.61453 -13.58455 -13.33459 -13.16604 -12.87951 -12.85841 -12.74922 -12.28971 -12.25000 -12.12368 -12.02870 -11.86776 -11.82677 -11.73789 -11.69115 -11.50911 -11.22599 -10.95098 -10.89515 -9.85065 -9.69265 -9.29041 -9.13099 -8.00884 -5.34973 -0.07592 0.20231 1.38913 1.43806 1.50851 1.60317 1.92090 2.28132 2.50212 2.55582 3.11404 3.28733 3.41554 3.48596 3.61105 3.70093 3.76251 3.78860 3.96245 4.00604 4.08285 4.13646 4.20210 4.21371 4.23257 4.34473 4.39725 4.40893 4.45369 4.57340 4.70013 4.74848 4.75861 4.81306 4.83298 4.84870 4.89336 4.99753 5.01420 5.09067 5.12546 5.19292 5.27232 5.28531 5.35292 5.39751 5.55551 5.61980 5.78592 6.23135 6.31632 6.34555 7.04113 7.08592 7.83807 8.04345 9.20520 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015132 B = 0.002489 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.906795 B =11247.778911 C =12290.613427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.152 3.848 4 C -0.208 4.208 5 C -0.039 4.039 6 C -0.178 4.178 7 C 0.559 3.441 8 O -0.582 6.582 9 N -0.591 5.591 10 C 0.065 3.935 11 C 0.128 3.872 12 C -0.150 4.150 13 C 0.157 3.843 14 N -0.736 5.736 15 C -0.234 4.234 16 H 0.056 0.944 17 C -0.067 4.067 18 N -0.985 5.985 19 Si 0.957 3.043 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.244 1.244 23 C -0.161 4.161 24 C -0.053 4.053 25 C -0.097 4.097 26 C -0.115 4.115 27 C -0.177 4.177 28 C -0.164 4.164 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.160 0.840 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.368 0.632 42 H 0.257 0.743 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.150 0.850 46 H 0.116 0.884 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.108 0.892 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.136 -25.490 8.252 35.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.233 6.233 3 C 0.106 3.894 4 C -0.226 4.226 5 C -0.058 4.058 6 C -0.181 4.181 7 C 0.350 3.650 8 O -0.463 6.463 9 N -0.321 5.321 10 C -0.077 4.077 11 C 0.024 3.976 12 C -0.190 4.190 13 C 0.047 3.953 14 N -0.377 5.377 15 C -0.365 4.365 16 H 0.074 0.926 17 C -0.258 4.258 18 N -0.635 5.635 19 Si 0.784 3.216 20 H -0.207 1.207 21 H -0.225 1.225 22 H -0.169 1.169 23 C -0.203 4.203 24 C -0.071 4.071 25 C -0.098 4.098 26 C -0.133 4.133 27 C -0.214 4.214 28 C -0.201 4.201 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.150 0.850 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.202 0.798 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.167 0.833 46 H 0.134 0.866 47 H 0.115 0.885 48 H 0.127 0.873 49 H 0.126 0.874 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.113 -25.052 8.647 35.165 hybrid contribution 0.169 0.156 -0.755 0.789 sum -22.944 -24.896 7.892 34.764 Atomic orbital electron populations 1.23429 0.76227 1.05861 1.02504 1.86040 1.23506 1.26132 1.87581 1.19129 0.91678 0.84905 0.93712 1.21358 1.01542 0.90843 1.08872 1.21038 0.92558 0.98375 0.93802 1.19646 0.94778 0.92196 1.11482 1.18668 0.79772 0.87843 0.78737 1.90743 1.66197 1.46312 1.43047 1.47755 1.28540 1.10717 1.45040 1.22273 0.99771 0.88931 0.96701 1.22309 0.93359 0.83947 0.97944 1.23816 0.97570 1.00700 0.96875 1.21566 0.88546 0.96738 0.88449 1.42617 1.27899 1.39720 1.27457 1.19085 1.00876 1.09882 1.06664 0.92623 1.25564 0.97122 1.01741 1.01402 1.69896 1.17119 1.42427 1.34073 0.85382 0.76862 0.80055 0.79299 1.20663 1.22483 1.16854 1.24110 0.94068 1.01408 1.00670 1.21332 1.00887 0.89663 0.95250 1.18565 0.90465 0.94361 1.06426 1.20781 0.91165 0.96010 1.05392 1.23171 0.94313 1.03663 1.00259 1.23108 1.01827 1.03640 0.91479 0.91443 0.86118 0.91539 0.82233 0.84983 0.90729 0.89386 0.90111 0.87473 0.90767 0.89082 0.90604 0.79801 0.93393 0.89137 0.91853 0.83251 0.86566 0.88537 0.87283 0.87352 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.55 9.65 -90.27 -0.87 -5.42 16 3 C 0.15 2.55 6.67 22.63 0.15 2.70 16 4 C -0.21 -3.24 9.01 22.33 0.20 -3.04 16 5 C -0.04 -0.78 9.64 22.50 0.22 -0.56 16 6 C -0.18 -4.02 5.15 -20.08 -0.10 -4.12 16 7 C 0.56 15.75 7.32 86.72 0.63 16.38 16 8 O -0.58 -20.71 16.42 -3.97 -0.07 -20.78 16 9 N -0.59 -14.93 3.08 -823.33 -2.54 -17.47 16 10 C 0.06 1.23 7.63 127.77 0.97 2.20 16 11 C 0.13 3.67 4.22 45.51 0.19 3.86 16 12 C -0.15 -4.40 7.35 31.12 0.23 -4.17 16 13 C 0.16 5.72 4.48 45.51 0.20 5.92 16 14 N -0.74 -32.90 5.20 -320.46 -1.67 -34.56 16 15 C -0.23 -13.11 10.45 84.03 0.88 -12.23 16 16 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 18 N -0.98 -62.85 13.97 21.65 0.30 -62.54 16 19 Si 0.96 44.17 27.73 68.60 1.90 46.07 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.24 -9.81 6.52 99.48 0.65 -9.16 16 23 C -0.16 -5.00 7.28 31.12 0.23 -4.77 16 24 C -0.05 -0.99 6.86 22.50 0.15 -0.84 16 25 C -0.10 -1.70 5.62 -19.81 -0.11 -1.81 16 26 C -0.12 -1.67 5.74 -11.54 -0.07 -1.74 16 27 C -0.18 -2.20 9.85 30.59 0.30 -1.90 16 28 C -0.16 -1.98 10.16 30.59 0.31 -1.67 16 29 H 0.07 0.32 7.65 -2.38 -0.02 0.30 16 30 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 32 H 0.16 1.56 6.28 -2.91 -0.02 1.54 16 33 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.07 1.18 6.85 -2.38 -0.02 1.16 16 35 H 0.09 1.43 5.99 -2.39 -0.01 1.41 16 36 H 0.08 1.56 6.14 -2.39 -0.01 1.55 16 37 H 0.11 3.35 7.22 -2.39 -0.02 3.33 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.09 2.49 6.97 -2.39 -0.02 2.48 16 40 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 41 H 0.37 15.46 5.79 -92.71 -0.54 14.93 16 42 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 43 H 0.09 2.68 6.60 -2.39 -0.02 2.67 16 44 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 45 H 0.15 2.43 3.48 -2.91 -0.01 2.42 16 46 H 0.12 1.67 7.76 -2.38 -0.02 1.65 16 47 H 0.10 1.21 6.17 -2.38 -0.01 1.20 16 48 H 0.11 1.12 8.14 -2.38 -0.02 1.11 16 49 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -74.21 395.46 3.41 -70.80 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.38 Total: 31.92 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.97 Total: -8.01 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -3.90 Total: -114.58 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.94 Total: -26.20 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.07 kcal Total: -74.21 3.41 -70.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999614436.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.480 kcal (2) G-P(sol) polarization free energy of solvation -74.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds