Wall clock time and date at job start Wed Apr 1 2020 03:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34780 * 120.00010 * 2 1 4 4 O 1.21277 * 119.99833 * 5.64818 * 3 2 1 5 5 C 1.50698 * 119.99640 * 185.64438 * 3 2 1 6 6 C 1.50696 * 109.82962 * 277.83257 * 5 3 2 7 7 C 1.38232 * 119.99943 * 269.16401 * 6 5 3 8 8 C 1.38241 * 119.99507 * 179.73959 * 7 6 5 9 9 C 1.38233 * 120.00179 * 0.55098 * 8 7 6 10 10 C 1.38238 * 119.99672 * 359.70460 * 9 8 7 11 11 C 1.38225 * 120.00436 * 0.02562 * 10 9 8 12 12 C 1.54388 * 109.82635 * 156.85097 * 5 3 2 13 13 C 1.55300 * 102.25513 * 261.84656 * 12 5 3 14 14 C 1.54950 * 100.94177 * 325.86715 * 13 12 5 15 15 O 1.43245 * 109.82938 * 38.72369 * 5 3 2 16 16 C 1.46497 * 119.99813 * 180.02562 * 2 1 3 17 17 C 1.53783 * 113.61528 * 39.17920 * 16 2 1 18 18 C 1.53788 * 87.07950 * 220.01821 * 17 16 2 19 19 N 1.46505 * 113.60715 * 139.97954 * 18 17 16 20 20 C 1.36946 * 119.99440 * 107.50828 * 19 18 17 21 21 H 1.07996 * 119.99981 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99933 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46936 * 60.00141 * 24 22 20 26 26 H 1.48496 * 109.47038 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47234 * 300.00241 * 24 22 20 28 28 C 1.53776 * 87.07941 * 25.43593 * 18 17 16 29 29 H 1.08995 * 109.46786 * 94.68513 * 1 2 3 30 30 H 1.08996 * 109.46518 * 214.69290 * 1 2 3 31 31 H 1.08998 * 109.46765 * 334.68753 * 1 2 3 32 32 H 1.07995 * 120.00228 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.99806 * 180.27217 * 8 7 6 34 34 H 1.08000 * 120.00319 * 179.72045 * 9 8 7 35 35 H 1.08003 * 119.99735 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.00224 * 179.97438 * 11 10 9 37 37 H 1.08999 * 110.84920 * 20.04103 * 12 5 3 38 38 H 1.08996 * 110.84404 * 143.45026 * 12 5 3 39 39 H 1.09000 * 111.12671 * 83.78614 * 13 12 5 40 40 H 1.09002 * 111.12351 * 207.91044 * 13 12 5 41 41 H 1.08998 * 110.30897 * 277.52852 * 14 13 12 42 42 H 1.08999 * 110.30507 * 155.36147 * 14 13 12 43 43 H 1.09000 * 112.85256 * 170.48849 * 16 2 1 44 44 H 1.08990 * 113.61585 * 334.56855 * 17 16 2 45 45 H 1.09000 * 113.61143 * 105.47579 * 17 16 2 46 46 H 1.08997 * 113.61858 * 270.88218 * 18 17 16 47 47 H 0.96990 * 120.00541 * 287.50572 * 19 18 17 48 48 H 0.96996 * 120.00078 * 180.02562 * 23 22 20 49 49 H 1.09004 * 113.61098 * 220.01345 * 28 18 17 50 50 H 1.09002 * 113.69278 * 89.12654 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5370 2.2149 0.1034 5 6 3.6405 1.1703 -0.1284 6 6 4.2690 0.9093 1.2162 7 6 4.5896 1.9671 2.0463 8 6 5.1613 1.7273 3.2819 9 6 5.4227 0.4305 3.6826 10 6 5.1069 -0.6271 2.8502 11 6 4.5302 -0.3877 1.6170 12 6 4.1165 2.5332 -0.6755 13 6 4.3032 2.2343 -2.1880 14 6 4.7848 0.7623 -2.1395 15 8 4.0506 0.1627 -1.0603 16 6 2.1975 -1.2687 -0.0006 17 6 1.5596 -2.3479 -0.8912 18 6 1.9069 -3.3561 0.2169 19 7 0.8589 -4.3522 0.4534 20 6 1.0429 -5.6482 0.0509 21 1 1.9602 -5.9358 -0.4411 22 6 0.0502 -6.5922 0.2754 23 7 -1.0676 -6.2417 0.8755 24 14 0.3008 -8.3598 -0.2743 25 1 1.4938 -8.9252 0.4056 26 1 -0.8971 -9.1628 0.0799 27 1 0.5051 -8.3967 -1.7446 28 6 1.8646 -2.1728 1.1981 29 1 -0.3633 -0.0839 -1.0242 30 1 -0.3632 -0.8450 0.5849 31 1 -0.3633 0.9290 0.4394 32 1 4.3901 2.9806 1.7311 33 1 5.4077 2.5535 3.9323 34 1 5.8735 0.2434 4.6460 35 1 5.3116 -1.6403 3.1630 36 1 4.2839 -1.2139 0.9665 37 1 3.3566 3.2995 -0.5224 38 1 5.0598 2.8277 -0.2157 39 1 3.3588 2.3211 -2.7251 40 1 5.0624 2.8825 -2.6257 41 1 5.8552 0.7209 -1.9379 42 1 4.5562 0.2584 -3.0786 43 1 3.2671 -1.1400 -0.1665 44 1 0.4882 -2.2142 -1.0397 45 1 2.0989 -2.5201 -1.8227 46 1 2.8970 -3.7992 0.1096 47 1 0.0350 -4.0939 0.8950 48 1 -1.7611 -6.9014 1.0327 49 1 2.6500 -2.2035 1.9533 50 1 0.8770 -1.9902 1.6217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999749311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:10 Heat of formation + Delta-G solvation = 6.362899 kcal Electronic energy + Delta-G solvation = -31942.616068 eV Core-core repulsion = 27936.782594 eV Total energy + Delta-G solvation = -4005.833474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40395 -39.09477 -38.60616 -37.94693 -34.61543 -32.90784 -32.72695 -32.25530 -30.92426 -29.88023 -28.68608 -27.02745 -25.11960 -24.68190 -23.73821 -23.14489 -22.54353 -21.57811 -21.32874 -19.34009 -19.01093 -18.08640 -17.20320 -16.99297 -16.21597 -16.05576 -15.63637 -15.37790 -14.90039 -14.80936 -14.59984 -14.52911 -14.10190 -13.85160 -13.66515 -13.40250 -13.01079 -12.93546 -12.82588 -12.57754 -12.22463 -12.18171 -12.03858 -11.73959 -11.70011 -11.55954 -11.42594 -11.15514 -11.00394 -10.95909 -10.88135 -10.66679 -10.44353 -10.31294 -10.20517 -9.96777 -9.66843 -9.42325 -8.99904 -8.88836 -8.81924 -8.35248 -6.97792 -5.79433 -3.08323 1.14605 1.31579 2.55801 3.10589 3.33705 3.42763 3.47437 3.48269 3.66970 4.21212 4.35339 4.47363 4.59500 4.67213 4.77604 4.84177 4.92127 4.98947 5.08536 5.18289 5.19739 5.32955 5.37634 5.42690 5.47044 5.48448 5.52304 5.57082 5.59194 5.72671 5.74191 5.81200 5.85517 5.88212 5.92033 5.95448 6.06692 6.14620 6.32151 6.33117 6.34607 6.37968 6.42300 6.52354 6.60875 6.68643 6.86625 6.88273 7.02695 7.59603 7.68140 8.18419 8.38922 9.50146 10.07423 10.41880 11.42888 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.003238 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.505520 B = 8646.475211 C = 9324.219247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.580 5.580 3 C 0.522 3.478 4 O -0.546 6.546 5 C 0.138 3.862 6 C -0.098 4.098 7 C -0.104 4.104 8 C -0.125 4.125 9 C -0.115 4.115 10 C -0.119 4.119 11 C -0.096 4.096 12 C -0.138 4.138 13 C -0.155 4.155 14 C 0.043 3.957 15 O -0.353 6.353 16 C 0.096 3.904 17 C -0.172 4.172 18 C 0.170 3.830 19 N -0.709 5.709 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.011 4.011 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.168 4.168 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.143 0.857 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.064 0.936 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.541 19.134 -0.918 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.310 5.310 3 C 0.308 3.692 4 O -0.425 6.425 5 C 0.095 3.905 6 C -0.098 4.098 7 C -0.122 4.122 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.137 4.137 11 C -0.113 4.113 12 C -0.176 4.176 13 C -0.192 4.192 14 C -0.032 4.032 15 O -0.272 6.272 16 C -0.007 4.007 17 C -0.214 4.214 18 C 0.058 3.942 19 N -0.347 5.347 20 C -0.376 4.376 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.209 4.209 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.160 0.840 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.175 19.233 -0.900 23.909 hybrid contribution -0.268 -0.825 -0.164 0.883 sum 13.907 18.408 -1.063 23.095 Atomic orbital electron populations 1.21664 0.79327 1.03313 1.01963 1.47733 1.06782 1.06092 1.70344 1.20389 0.88782 0.83752 0.76262 1.90646 1.69231 1.31469 1.51129 1.20854 0.91034 0.89869 0.88719 1.19704 1.00939 0.94327 0.94876 1.20999 0.98439 0.98573 0.94235 1.21083 0.99976 0.97030 0.96175 1.21223 0.99596 0.92842 0.99595 1.21232 0.98898 0.99421 0.94177 1.21433 0.96830 0.96609 0.96453 1.23191 1.03237 0.95928 0.95195 1.23266 1.02730 0.96825 0.96393 1.23531 0.96078 0.92841 0.90793 1.88505 1.73262 1.30626 1.34853 1.23477 0.98117 0.80629 0.98450 1.24256 1.01067 0.96689 0.99393 1.21335 0.93654 0.87223 0.92027 1.42345 1.16941 1.05630 1.69799 1.19262 1.01104 0.85598 1.31598 0.91067 1.24753 0.96504 0.98241 1.01258 1.69648 1.07160 1.33811 1.47441 0.86272 0.76826 0.84802 0.78313 1.21219 1.21716 1.21226 1.24044 1.02024 0.97429 0.97366 0.92588 0.90546 0.90646 0.85782 0.85984 0.86044 0.85548 0.84292 0.87812 0.89382 0.90188 0.89491 0.91680 0.89140 0.84016 0.90065 0.92122 0.90382 0.78106 0.93405 0.91703 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 9.08 59.85 0.54 1.72 16 2 N -0.58 -8.86 3.08 -173.00 -0.53 -9.40 16 3 C 0.52 8.00 6.63 -10.99 -0.07 7.92 16 4 O -0.55 -9.46 15.01 5.56 0.08 -9.38 16 5 C 0.14 1.72 0.71 -92.20 -0.07 1.65 16 6 C -0.10 -1.20 4.76 -104.62 -0.50 -1.70 16 7 C -0.10 -1.15 8.75 -39.58 -0.35 -1.50 16 8 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 9 C -0.11 -1.15 10.05 -39.58 -0.40 -1.54 16 10 C -0.12 -1.33 10.05 -39.59 -0.40 -1.72 16 11 C -0.10 -1.18 7.52 -39.58 -0.30 -1.48 16 12 C -0.14 -1.39 4.99 -24.78 -0.12 -1.51 16 13 C -0.15 -1.31 7.16 -24.48 -0.18 -1.49 16 14 C 0.04 0.40 7.78 38.19 0.30 0.69 16 15 O -0.35 -4.30 6.85 -35.23 -0.24 -4.54 16 16 C 0.10 1.45 2.54 -67.12 -0.17 1.27 16 17 C -0.17 -2.96 7.37 -25.91 -0.19 -3.15 16 18 C 0.17 3.27 4.48 -67.11 -0.30 2.97 16 19 N -0.71 -17.34 5.40 -52.63 -0.28 -17.62 16 20 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 C -0.17 -2.78 6.97 -25.92 -0.18 -2.96 16 29 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 30 H 0.08 1.13 6.53 -51.93 -0.34 0.79 16 31 H 0.07 1.10 7.22 -51.93 -0.38 0.73 16 32 H 0.12 1.21 6.82 -52.49 -0.36 0.85 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.14 1.78 4.37 -52.49 -0.23 1.55 16 37 H 0.10 1.16 6.73 -51.93 -0.35 0.81 16 38 H 0.09 0.75 6.85 -51.93 -0.36 0.39 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.14 2.03 2.17 -52.41 -0.11 1.92 16 44 H 0.08 1.49 6.87 -51.93 -0.36 1.14 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 47 H 0.38 10.04 7.92 -40.82 -0.32 9.72 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.06 1.00 6.94 -51.93 -0.36 0.64 16 50 H 0.08 1.42 6.73 -51.93 -0.35 1.07 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -31.89 384.95 -9.77 -41.66 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -7.28 Total: 13.18 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -3.02 Total: -9.68 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.09 Total: -54.10 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.16 Total: -13.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.89 -9.77 -41.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999749311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.026 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds