Wall clock time and date at job start Wed Apr 1 2020 03:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34780 * 120.00010 * 2 1 4 4 O 1.21277 * 119.99833 * 5.64818 * 3 2 1 5 5 C 1.50698 * 119.99640 * 185.64438 * 3 2 1 6 6 C 1.50696 * 109.82962 * 277.83257 * 5 3 2 7 7 C 1.38232 * 119.99943 * 269.16401 * 6 5 3 8 8 C 1.38241 * 119.99507 * 179.73959 * 7 6 5 9 9 C 1.38233 * 120.00179 * 0.55098 * 8 7 6 10 10 C 1.38238 * 119.99672 * 359.70460 * 9 8 7 11 11 C 1.38225 * 120.00436 * 0.02562 * 10 9 8 12 12 C 1.54388 * 109.82635 * 156.85097 * 5 3 2 13 13 C 1.55300 * 102.25513 * 261.84656 * 12 5 3 14 14 C 1.54950 * 100.94177 * 325.86715 * 13 12 5 15 15 O 1.43245 * 109.82938 * 38.72369 * 5 3 2 16 16 C 1.46497 * 119.99813 * 180.02562 * 2 1 3 17 17 C 1.53783 * 113.61528 * 39.17920 * 16 2 1 18 18 C 1.53788 * 87.07950 * 220.01821 * 17 16 2 19 19 N 1.46505 * 113.60715 * 139.97954 * 18 17 16 20 20 C 1.36946 * 119.99440 * 107.50828 * 19 18 17 21 21 H 1.07996 * 119.99981 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99933 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46936 * 60.00141 * 24 22 20 26 26 H 1.48496 * 109.47038 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47234 * 300.00241 * 24 22 20 28 28 C 1.53776 * 87.07941 * 25.43593 * 18 17 16 29 29 H 1.08995 * 109.46786 * 94.68513 * 1 2 3 30 30 H 1.08996 * 109.46518 * 214.69290 * 1 2 3 31 31 H 1.08998 * 109.46765 * 334.68753 * 1 2 3 32 32 H 1.07995 * 120.00228 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.99806 * 180.27217 * 8 7 6 34 34 H 1.08000 * 120.00319 * 179.72045 * 9 8 7 35 35 H 1.08003 * 119.99735 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.00224 * 179.97438 * 11 10 9 37 37 H 1.08999 * 110.84920 * 20.04103 * 12 5 3 38 38 H 1.08996 * 110.84404 * 143.45026 * 12 5 3 39 39 H 1.09000 * 111.12671 * 83.78614 * 13 12 5 40 40 H 1.09002 * 111.12351 * 207.91044 * 13 12 5 41 41 H 1.08998 * 110.30897 * 277.52852 * 14 13 12 42 42 H 1.08999 * 110.30507 * 155.36147 * 14 13 12 43 43 H 1.09000 * 112.85256 * 170.48849 * 16 2 1 44 44 H 1.08990 * 113.61585 * 334.56855 * 17 16 2 45 45 H 1.09000 * 113.61143 * 105.47579 * 17 16 2 46 46 H 1.08997 * 113.61858 * 270.88218 * 18 17 16 47 47 H 0.96990 * 120.00541 * 287.50572 * 19 18 17 48 48 H 0.96996 * 120.00078 * 180.02562 * 23 22 20 49 49 H 1.09004 * 113.61098 * 220.01345 * 28 18 17 50 50 H 1.09002 * 113.69278 * 89.12654 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5370 2.2149 0.1034 5 6 3.6405 1.1703 -0.1284 6 6 4.2690 0.9093 1.2162 7 6 4.5896 1.9671 2.0463 8 6 5.1613 1.7273 3.2819 9 6 5.4227 0.4305 3.6826 10 6 5.1069 -0.6271 2.8502 11 6 4.5302 -0.3877 1.6170 12 6 4.1165 2.5332 -0.6755 13 6 4.3032 2.2343 -2.1880 14 6 4.7848 0.7623 -2.1395 15 8 4.0506 0.1627 -1.0603 16 6 2.1975 -1.2687 -0.0006 17 6 1.5596 -2.3479 -0.8912 18 6 1.9069 -3.3561 0.2169 19 7 0.8589 -4.3522 0.4534 20 6 1.0429 -5.6482 0.0509 21 1 1.9602 -5.9358 -0.4411 22 6 0.0502 -6.5922 0.2754 23 7 -1.0676 -6.2417 0.8755 24 14 0.3008 -8.3598 -0.2743 25 1 1.4938 -8.9252 0.4056 26 1 -0.8971 -9.1628 0.0799 27 1 0.5051 -8.3967 -1.7446 28 6 1.8646 -2.1728 1.1981 29 1 -0.3633 -0.0839 -1.0242 30 1 -0.3632 -0.8450 0.5849 31 1 -0.3633 0.9290 0.4394 32 1 4.3901 2.9806 1.7311 33 1 5.4077 2.5535 3.9323 34 1 5.8735 0.2434 4.6460 35 1 5.3116 -1.6403 3.1630 36 1 4.2839 -1.2139 0.9665 37 1 3.3566 3.2995 -0.5224 38 1 5.0598 2.8277 -0.2157 39 1 3.3588 2.3211 -2.7251 40 1 5.0624 2.8825 -2.6257 41 1 5.8552 0.7209 -1.9379 42 1 4.5562 0.2584 -3.0786 43 1 3.2671 -1.1400 -0.1665 44 1 0.4882 -2.2142 -1.0397 45 1 2.0989 -2.5201 -1.8227 46 1 2.8970 -3.7992 0.1096 47 1 0.0350 -4.0939 0.8950 48 1 -1.7611 -6.9014 1.0327 49 1 2.6500 -2.2035 1.9533 50 1 0.8770 -1.9902 1.6217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999749311.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:09 Heat of formation + Delta-G solvation = -11.910192 kcal Electronic energy + Delta-G solvation = -31943.408449 eV Core-core repulsion = 27936.782594 eV Total energy + Delta-G solvation = -4006.625855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.41888 -40.27572 -39.59139 -39.07098 -36.19014 -34.63070 -33.60606 -33.05356 -31.90784 -31.63663 -29.60610 -28.12130 -26.61357 -26.34203 -24.81404 -24.06371 -23.84854 -22.49884 -22.21100 -20.68859 -20.20541 -19.15144 -19.03991 -18.06616 -17.35606 -16.99313 -16.71747 -16.58857 -16.13969 -16.00059 -15.86113 -15.65900 -15.25600 -15.04882 -14.81026 -14.57330 -14.30797 -14.12530 -13.93252 -13.59928 -13.48444 -13.27452 -13.16745 -13.12385 -12.96164 -12.74009 -12.69229 -12.38572 -12.22487 -12.20641 -12.03292 -11.88570 -11.84145 -11.78696 -11.67412 -11.44168 -11.18715 -10.84310 -10.50189 -9.81202 -9.73389 -9.60870 -8.97218 -7.92640 -5.21068 0.31004 0.49775 1.39171 1.49438 1.51987 1.57875 1.94632 2.47899 2.58701 2.82601 3.37998 3.38992 3.46748 3.54384 3.73826 3.78261 3.86301 4.03015 4.10099 4.11516 4.17376 4.28682 4.29558 4.32366 4.34757 4.38029 4.52348 4.60393 4.66948 4.72368 4.74055 4.76159 4.82542 4.87715 4.89989 4.93690 4.96687 5.02982 5.10595 5.15162 5.16963 5.21271 5.44427 5.53047 5.53979 5.55323 5.60132 5.65072 5.86506 6.07797 6.28718 6.37457 6.98242 7.35322 8.10910 8.34289 9.30556 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.003238 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.505520 B = 8646.475211 C = 9324.219247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.585 5.585 3 C 0.515 3.485 4 O -0.570 6.570 5 C 0.141 3.859 6 C -0.112 4.112 7 C -0.113 4.113 8 C -0.125 4.125 9 C -0.116 4.116 10 C -0.130 4.130 11 C -0.111 4.111 12 C -0.135 4.135 13 C -0.148 4.148 14 C 0.037 3.963 15 O -0.370 6.370 16 C 0.118 3.882 17 C -0.165 4.165 18 C 0.158 3.842 19 N -0.723 5.723 20 C -0.243 4.243 21 H 0.080 0.920 22 C -0.074 4.074 23 N -0.971 5.971 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.278 1.278 28 C -0.158 4.158 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.159 0.841 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.373 0.627 48 H 0.250 0.750 49 H 0.077 0.923 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.138 20.063 -1.085 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.314 5.314 3 C 0.303 3.697 4 O -0.451 6.451 5 C 0.098 3.902 6 C -0.113 4.113 7 C -0.131 4.131 8 C -0.142 4.142 9 C -0.134 4.134 10 C -0.148 4.148 11 C -0.129 4.129 12 C -0.173 4.173 13 C -0.186 4.186 14 C -0.038 4.038 15 O -0.290 6.290 16 C 0.015 3.985 17 C -0.207 4.207 18 C 0.047 3.953 19 N -0.360 5.360 20 C -0.375 4.375 21 H 0.098 0.902 22 C -0.267 4.267 23 N -0.622 5.622 24 Si 0.800 3.200 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.204 1.204 28 C -0.198 4.198 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.175 0.825 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.204 0.796 48 H 0.059 0.941 49 H 0.096 0.904 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.830 20.193 -1.091 26.309 hybrid contribution -1.018 -1.017 -0.100 1.443 sum 15.813 19.175 -1.191 24.883 Atomic orbital electron populations 1.21651 0.79523 1.02988 1.02135 1.47814 1.06904 1.06312 1.70407 1.21026 0.90257 0.83094 0.75281 1.90624 1.70216 1.32134 1.52076 1.20804 0.88759 0.91236 0.89361 1.19777 1.01714 0.94743 0.95040 1.21219 0.98471 0.98782 0.94618 1.21432 0.98916 0.97912 0.95982 1.21550 0.98915 0.92584 1.00311 1.21447 0.98886 1.00458 0.94005 1.21421 0.97985 0.96437 0.97042 1.23208 1.03544 0.94206 0.96345 1.23267 1.03048 0.96977 0.95273 1.23758 0.96722 0.93107 0.90196 1.88416 1.73719 1.31294 1.35616 1.23320 0.98705 0.80057 0.96374 1.24069 1.00511 0.96758 0.99350 1.21622 0.92628 0.87070 0.93946 1.42513 1.17673 1.05894 1.69957 1.19690 1.00965 0.86728 1.30101 0.90215 1.25539 0.96553 1.02189 1.02376 1.69811 1.08080 1.34687 1.49575 0.85247 0.76500 0.80122 0.78125 1.20239 1.22515 1.20430 1.23883 1.01819 0.96318 0.97736 0.92153 0.91078 0.90752 0.84803 0.83432 0.83682 0.84603 0.85253 0.89146 0.87479 0.91407 0.86637 0.89978 0.88335 0.82471 0.91458 0.91397 0.89659 0.79551 0.94121 0.90423 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.39 9.08 127.77 1.16 3.55 16 2 N -0.59 -17.84 3.08 -819.64 -2.53 -20.36 16 3 C 0.52 15.60 6.63 87.66 0.58 16.18 16 4 O -0.57 -19.74 15.01 -3.02 -0.05 -19.79 16 5 C 0.14 3.35 0.71 -11.82 -0.01 3.34 16 6 C -0.11 -2.60 4.76 -19.87 -0.09 -2.69 16 7 C -0.11 -2.27 8.75 22.27 0.19 -2.07 16 8 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 9 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 10 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 11 C -0.11 -2.60 7.52 22.27 0.17 -2.44 16 12 C -0.14 -2.50 4.99 31.86 0.16 -2.34 16 13 C -0.15 -2.20 7.16 32.05 0.23 -1.97 16 14 C 0.04 0.60 7.78 72.65 0.56 1.16 16 15 O -0.37 -8.48 6.85 -148.98 -1.02 -9.50 16 16 C 0.12 3.51 2.54 45.52 0.12 3.63 16 17 C -0.17 -5.65 7.37 31.12 0.23 -5.42 16 18 C 0.16 6.03 4.48 45.52 0.20 6.23 16 19 N -0.72 -35.84 5.40 -320.43 -1.73 -37.57 16 20 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 21 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 23 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 24 Si 0.97 45.62 29.55 68.60 2.03 47.64 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 C -0.16 -5.18 6.97 31.12 0.22 -4.97 16 29 H 0.06 1.73 8.06 -2.39 -0.02 1.71 16 30 H 0.07 2.18 6.53 -2.39 -0.02 2.17 16 31 H 0.07 2.23 7.22 -2.39 -0.02 2.21 16 32 H 0.13 2.34 6.82 -2.91 -0.02 2.32 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.13 3.18 4.37 -2.91 -0.01 3.16 16 37 H 0.09 1.94 6.73 -2.39 -0.02 1.92 16 38 H 0.11 1.54 6.85 -2.39 -0.02 1.53 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.16 4.35 2.17 -10.00 -0.02 4.33 16 44 H 0.07 2.51 6.87 -2.39 -0.02 2.49 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.09 3.13 8.10 -2.39 -0.02 3.11 16 47 H 0.37 20.04 7.92 -92.72 -0.73 19.30 16 48 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 49 H 0.08 2.35 6.94 -2.38 -0.02 2.33 16 50 H 0.07 2.45 6.73 -2.39 -0.02 2.43 16 Total: -1.00 -68.81 384.95 2.90 -65.91 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: 0.22 Total: 42.68 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.69 Total: -10.11 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -3.98 Total: -116.83 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.07 Total: -29.29 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.81 2.90 -65.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999749311.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.998 kcal (2) G-P(sol) polarization free energy of solvation -68.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds