Wall clock time and date at job start Wed Apr 1 2020 03:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99781 * 2 1 4 4 O 1.21584 * 120.00147 * 185.52810 * 3 2 1 5 5 C 1.47600 * 119.99802 * 5.52214 * 3 2 1 6 6 C 1.39734 * 120.09170 * 214.03209 * 5 3 2 7 7 C 1.37697 * 119.91530 * 179.74525 * 6 5 3 8 8 C 1.39000 * 120.08676 * 0.51193 * 7 6 5 9 9 O 1.35710 * 119.91290 * 179.74241 * 8 7 6 10 10 C 1.42893 * 116.99970 * 185.49289 * 9 8 7 11 11 C 1.53777 * 113.61606 * 254.37637 * 10 9 8 12 12 C 1.53955 * 87.02290 * 220.05285 * 11 10 9 13 13 C 1.53780 * 87.11187 * 25.35780 * 12 11 10 14 14 C 1.38992 * 120.17568 * 359.76749 * 8 7 6 15 15 C 1.37704 * 120.09102 * 359.97427 * 14 8 7 16 16 C 1.46500 * 120.00329 * 180.02562 * 2 1 3 17 17 C 1.53784 * 113.61403 * 243.82827 * 16 2 1 18 18 C 1.53781 * 87.07934 * 89.11355 * 17 16 2 19 19 N 1.46501 * 113.61592 * 270.79866 * 18 17 16 20 20 C 1.36942 * 119.99909 * 198.54777 * 19 18 17 21 21 H 1.07996 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99829 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00160 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99860 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47353 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47244 * 120.00487 * 24 22 20 27 27 H 1.48510 * 109.47082 * 240.00190 * 24 22 20 28 28 C 1.53778 * 87.17544 * 25.39182 * 18 17 16 29 29 H 1.09002 * 109.46831 * 265.79797 * 1 2 3 30 30 H 1.08993 * 109.47448 * 25.80135 * 1 2 3 31 31 H 1.08998 * 109.46895 * 145.80575 * 1 2 3 32 32 H 1.08004 * 120.04163 * 359.97438 * 6 5 3 33 33 H 1.08004 * 119.96252 * 180.25717 * 7 6 5 34 34 H 1.08996 * 112.85397 * 25.57655 * 10 9 8 35 35 H 1.09010 * 113.61213 * 334.56820 * 11 10 9 36 36 H 1.09002 * 113.61804 * 105.47107 * 11 10 9 37 37 H 1.09010 * 113.53453 * 270.80972 * 12 11 10 38 38 H 1.08999 * 113.67011 * 139.93685 * 12 11 10 39 39 H 1.08997 * 113.61756 * 220.08872 * 13 12 11 40 40 H 1.09003 * 113.68280 * 89.20247 * 13 12 11 41 41 H 1.07998 * 119.95409 * 179.97438 * 14 8 7 42 42 H 1.07991 * 120.04622 * 180.02562 * 15 14 8 43 43 H 1.09000 * 112.90710 * 112.57352 * 16 2 1 44 44 H 1.09004 * 113.60822 * 334.56815 * 17 16 2 45 45 H 1.08998 * 113.61508 * 203.66671 * 17 16 2 46 46 H 1.09004 * 113.61274 * 139.98380 * 18 17 16 47 47 H 0.97001 * 120.00234 * 18.54583 * 19 18 17 48 48 H 0.96998 * 119.99997 * 180.02562 * 23 22 20 49 49 H 1.09000 * 113.61733 * 89.15119 * 28 18 17 50 50 H 1.09006 * 113.61681 * 220.06197 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3504 1.1698 -0.1014 5 6 1.4059 2.4425 0.1230 6 6 1.8672 3.5825 -0.5403 7 6 1.1777 4.7691 -0.4273 8 6 0.0300 4.8363 0.3540 9 8 -0.6439 6.0088 0.4672 10 6 -1.7435 6.0397 1.3792 11 6 -3.1173 6.0318 0.6883 12 6 -3.5676 7.0515 1.7501 13 6 -2.0886 7.4519 1.8805 14 6 -0.4290 3.7060 1.0201 15 6 0.2520 2.5144 0.9079 16 6 2.1976 -1.2687 -0.0006 17 6 3.0438 -1.4919 1.2639 18 6 1.7999 -2.1491 1.8851 19 7 0.9223 -1.2042 2.5802 20 6 0.0047 -1.6624 3.4876 21 1 -0.0721 -2.7204 3.6905 22 6 -0.8265 -0.7671 4.1466 23 7 -0.7331 0.5222 3.8989 24 14 -2.0785 -1.3922 5.3839 25 1 -1.9836 -2.8710 5.4802 26 1 -1.8030 -0.7913 6.7137 27 1 -3.4441 -1.0110 4.9419 28 6 1.3470 -2.4699 0.4510 29 1 -0.3633 -0.0753 1.0249 30 1 -0.3634 0.9251 -0.4473 31 1 -0.3633 -0.8500 -0.5775 32 1 2.7615 3.5322 -1.1439 33 1 1.5313 5.6497 -0.9430 34 1 -1.6520 5.3033 2.1776 35 1 -3.0991 6.4350 -0.3243 36 1 -3.6339 5.0742 0.7544 37 1 -3.9764 6.5914 2.6498 38 1 -4.2016 7.8448 1.3539 39 1 -1.7759 7.6393 2.9077 40 1 -1.7874 8.2443 1.1952 41 1 -1.3208 3.7624 1.6265 42 1 -0.1055 1.6366 1.4254 43 1 2.7435 -1.4430 -0.9278 44 1 3.3421 -0.5675 1.7584 45 1 3.8748 -2.1818 1.1170 46 1 2.0249 -3.0342 2.4802 47 1 0.9911 -0.2540 2.3977 48 1 -1.3137 1.1479 4.3597 49 1 1.7133 -3.4277 0.0813 50 1 0.2775 -2.3339 0.2900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999870307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:57 Heat of formation + Delta-G solvation = 32.720418 kcal Electronic energy + Delta-G solvation = -31198.492697 eV Core-core repulsion = 27193.802171 eV Total energy + Delta-G solvation = -4004.690527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59738 -40.02051 -38.45565 -37.39359 -35.98468 -34.17611 -33.25776 -30.81978 -30.17239 -29.58336 -26.81740 -25.91088 -25.75523 -24.96412 -24.31728 -23.37492 -22.49744 -21.90093 -20.00497 -19.48437 -18.38379 -17.91801 -17.50054 -16.63640 -16.34221 -15.93592 -15.65448 -15.15090 -14.94165 -14.78052 -14.35009 -14.28118 -13.91794 -13.88992 -13.35075 -13.20743 -12.99146 -12.70002 -12.58799 -12.48233 -12.34848 -12.06874 -11.94725 -11.70185 -11.53811 -11.37264 -11.32536 -11.13944 -10.94481 -10.80582 -10.73594 -10.43138 -10.29546 -10.26960 -10.13098 -9.81760 -9.62306 -9.27129 -8.94955 -8.77696 -8.10508 -7.91722 -7.05570 -5.89816 -3.16987 1.27040 1.61157 3.17769 3.23807 3.34918 3.42718 3.43417 3.44967 4.06744 4.32611 4.34570 4.49517 4.59665 4.64040 4.84734 4.97301 5.11842 5.18828 5.22747 5.27869 5.42887 5.45589 5.46729 5.50471 5.54904 5.58239 5.63727 5.68385 5.72760 5.77835 5.82255 5.88931 5.89529 6.02813 6.08056 6.18316 6.25946 6.34367 6.38877 6.46284 6.59915 6.65987 6.68796 6.72276 6.74502 6.89895 6.93028 7.18823 7.51451 7.64103 7.87391 8.30950 8.65031 9.42122 9.98914 10.36010 11.32550 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.004116 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.163178 B = 6801.001261 C = 9422.998055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.582 5.582 3 C 0.565 3.435 4 O -0.548 6.548 5 C -0.174 4.174 6 C -0.030 4.030 7 C -0.172 4.172 8 C 0.147 3.853 9 O -0.303 6.303 10 C 0.051 3.949 11 C -0.156 4.156 12 C -0.140 4.140 13 C -0.132 4.132 14 C -0.213 4.213 15 C -0.032 4.032 16 C 0.130 3.870 17 C -0.161 4.161 18 C 0.165 3.835 19 N -0.705 5.705 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.292 1.292 28 C -0.182 4.182 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.386 0.614 48 H 0.255 0.745 49 H 0.080 0.920 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 8.770 -8.889 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.314 5.314 3 C 0.355 3.645 4 O -0.428 6.428 5 C -0.178 4.178 6 C -0.048 4.048 7 C -0.191 4.191 8 C 0.101 3.899 9 O -0.217 6.217 10 C -0.005 4.005 11 C -0.194 4.194 12 C -0.178 4.178 13 C -0.169 4.169 14 C -0.231 4.231 15 C -0.050 4.050 16 C 0.027 3.973 17 C -0.200 4.200 18 C 0.053 3.947 19 N -0.346 5.346 20 C -0.369 4.369 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.223 4.223 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.151 0.849 42 H 0.182 0.818 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.222 0.778 48 H 0.065 0.935 49 H 0.098 0.902 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.538 8.846 -8.886 12.793 hybrid contribution -0.871 -0.133 0.812 1.198 sum -3.409 8.713 -8.074 12.358 Atomic orbital electron populations 1.22425 0.79155 1.01493 1.05038 1.47324 1.07083 1.04719 1.72250 1.18177 0.86820 0.83328 0.76210 1.90719 1.13754 1.87477 1.50809 1.19839 0.98693 0.94355 1.04869 1.20917 0.97542 0.90371 0.96013 1.20231 0.95634 0.98919 1.04308 1.19292 0.91322 0.84951 0.94334 1.86075 1.43834 1.31571 1.60187 1.24276 0.84312 0.99458 0.92477 1.23532 0.95725 1.00502 0.99630 1.22683 0.96055 0.99405 0.99631 1.23182 0.95696 0.96048 1.01983 1.21232 1.03920 0.92798 1.05165 1.21984 0.91103 0.99130 0.92765 1.21778 0.94390 0.83558 0.97576 1.23684 0.97729 1.01739 0.96867 1.21158 0.89703 0.93333 0.90515 1.42347 1.40103 1.05328 1.46783 1.19353 1.10103 0.92760 1.14663 0.90986 1.24674 1.00150 0.95344 1.00464 1.69604 1.41908 1.00477 1.46015 0.86125 0.81079 0.77849 0.81153 1.20649 1.21989 1.21946 1.24211 1.00622 0.95637 1.01808 0.88051 0.91612 0.91853 0.84928 0.85198 0.87599 0.89114 0.90580 0.89569 0.90510 0.90494 0.89023 0.84864 0.81825 0.91155 0.90967 0.89753 0.92188 0.77776 0.93549 0.90177 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 7.17 59.85 0.43 1.47 16 2 N -0.58 -10.57 2.12 -174.10 -0.37 -10.94 16 3 C 0.57 11.05 6.99 -12.44 -0.09 10.96 16 4 O -0.55 -11.94 16.07 5.29 0.09 -11.86 16 5 C -0.17 -3.11 5.19 -104.96 -0.55 -3.65 16 6 C -0.03 -0.46 9.60 -39.22 -0.38 -0.84 16 7 C -0.17 -2.48 9.97 -39.50 -0.39 -2.87 16 8 C 0.15 2.19 6.69 -39.02 -0.26 1.93 16 9 O -0.30 -4.13 10.13 -18.83 -0.19 -4.32 16 10 C 0.05 0.58 3.67 -25.92 -0.10 0.48 16 11 C -0.16 -1.51 7.93 -25.83 -0.20 -1.71 16 12 C -0.14 -1.13 8.09 -25.83 -0.21 -1.34 16 13 C -0.13 -1.20 7.91 -25.92 -0.21 -1.40 16 14 C -0.21 -3.38 9.00 -39.50 -0.36 -3.74 16 15 C -0.03 -0.56 7.58 -39.22 -0.30 -0.86 16 16 C 0.13 2.26 4.09 -67.02 -0.27 1.99 16 17 C -0.16 -2.94 7.16 -25.92 -0.19 -3.13 16 18 C 0.16 3.23 4.53 -67.12 -0.30 2.93 16 19 N -0.71 -16.52 3.83 -52.64 -0.20 -16.72 16 20 C -0.24 -6.10 9.98 -15.06 -0.15 -6.25 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -24.81 13.06 55.49 0.72 -24.09 16 24 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C -0.18 -3.00 7.17 -25.83 -0.19 -3.19 16 29 H 0.10 2.05 4.91 -51.93 -0.25 1.80 16 30 H 0.07 1.03 5.74 -51.93 -0.30 0.73 16 31 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 32 H 0.13 1.93 7.98 -52.48 -0.42 1.51 16 33 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.11 1.26 5.94 -51.93 -0.31 0.95 16 35 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.13 1.98 5.89 -52.49 -0.31 1.67 16 42 H 0.16 3.27 5.36 -52.49 -0.28 2.99 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.54 7.40 -51.93 -0.38 1.16 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.06 1.17 8.13 -51.93 -0.42 0.74 16 47 H 0.39 9.55 5.77 -40.82 -0.24 9.32 16 48 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.08 1.36 5.96 -51.93 -0.31 1.05 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -28.98 391.57 -10.21 -39.20 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -7.34 Total: 16.45 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.80 Total: -9.59 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.15 Total: -51.75 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.11 Total: -16.18 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.98 -10.21 -39.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999870307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.918 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds