Wall clock time and date at job start Wed Apr 1 2020 03:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99781 * 2 1 4 4 O 1.21584 * 120.00147 * 185.52810 * 3 2 1 5 5 C 1.47600 * 119.99802 * 5.52214 * 3 2 1 6 6 C 1.39734 * 120.09170 * 214.03209 * 5 3 2 7 7 C 1.37697 * 119.91530 * 179.74525 * 6 5 3 8 8 C 1.39000 * 120.08676 * 0.51193 * 7 6 5 9 9 O 1.35710 * 119.91290 * 179.74241 * 8 7 6 10 10 C 1.42893 * 116.99970 * 185.49289 * 9 8 7 11 11 C 1.53777 * 113.61606 * 254.37637 * 10 9 8 12 12 C 1.53955 * 87.02290 * 220.05285 * 11 10 9 13 13 C 1.53780 * 87.11187 * 25.35780 * 12 11 10 14 14 C 1.38992 * 120.17568 * 359.76749 * 8 7 6 15 15 C 1.37704 * 120.09102 * 359.97427 * 14 8 7 16 16 C 1.46500 * 120.00329 * 180.02562 * 2 1 3 17 17 C 1.53784 * 113.61403 * 243.82827 * 16 2 1 18 18 C 1.53781 * 87.07934 * 89.11355 * 17 16 2 19 19 N 1.46501 * 113.61592 * 270.79866 * 18 17 16 20 20 C 1.36942 * 119.99909 * 198.54777 * 19 18 17 21 21 H 1.07996 * 119.99781 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99829 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00160 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99860 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47353 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47244 * 120.00487 * 24 22 20 27 27 H 1.48510 * 109.47082 * 240.00190 * 24 22 20 28 28 C 1.53778 * 87.17544 * 25.39182 * 18 17 16 29 29 H 1.09002 * 109.46831 * 265.79797 * 1 2 3 30 30 H 1.08993 * 109.47448 * 25.80135 * 1 2 3 31 31 H 1.08998 * 109.46895 * 145.80575 * 1 2 3 32 32 H 1.08004 * 120.04163 * 359.97438 * 6 5 3 33 33 H 1.08004 * 119.96252 * 180.25717 * 7 6 5 34 34 H 1.08996 * 112.85397 * 25.57655 * 10 9 8 35 35 H 1.09010 * 113.61213 * 334.56820 * 11 10 9 36 36 H 1.09002 * 113.61804 * 105.47107 * 11 10 9 37 37 H 1.09010 * 113.53453 * 270.80972 * 12 11 10 38 38 H 1.08999 * 113.67011 * 139.93685 * 12 11 10 39 39 H 1.08997 * 113.61756 * 220.08872 * 13 12 11 40 40 H 1.09003 * 113.68280 * 89.20247 * 13 12 11 41 41 H 1.07998 * 119.95409 * 179.97438 * 14 8 7 42 42 H 1.07991 * 120.04622 * 180.02562 * 15 14 8 43 43 H 1.09000 * 112.90710 * 112.57352 * 16 2 1 44 44 H 1.09004 * 113.60822 * 334.56815 * 17 16 2 45 45 H 1.08998 * 113.61508 * 203.66671 * 17 16 2 46 46 H 1.09004 * 113.61274 * 139.98380 * 18 17 16 47 47 H 0.97001 * 120.00234 * 18.54583 * 19 18 17 48 48 H 0.96998 * 119.99997 * 180.02562 * 23 22 20 49 49 H 1.09000 * 113.61733 * 89.15119 * 28 18 17 50 50 H 1.09006 * 113.61681 * 220.06197 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3504 1.1698 -0.1014 5 6 1.4059 2.4425 0.1230 6 6 1.8672 3.5825 -0.5403 7 6 1.1777 4.7691 -0.4273 8 6 0.0300 4.8363 0.3540 9 8 -0.6439 6.0088 0.4672 10 6 -1.7435 6.0397 1.3792 11 6 -3.1173 6.0318 0.6883 12 6 -3.5676 7.0515 1.7501 13 6 -2.0886 7.4519 1.8805 14 6 -0.4290 3.7060 1.0201 15 6 0.2520 2.5144 0.9079 16 6 2.1976 -1.2687 -0.0006 17 6 3.0438 -1.4919 1.2639 18 6 1.7999 -2.1491 1.8851 19 7 0.9223 -1.2042 2.5802 20 6 0.0047 -1.6624 3.4876 21 1 -0.0721 -2.7204 3.6905 22 6 -0.8265 -0.7671 4.1466 23 7 -0.7331 0.5222 3.8989 24 14 -2.0785 -1.3922 5.3839 25 1 -1.9836 -2.8710 5.4802 26 1 -1.8030 -0.7913 6.7137 27 1 -3.4441 -1.0110 4.9419 28 6 1.3470 -2.4699 0.4510 29 1 -0.3633 -0.0753 1.0249 30 1 -0.3634 0.9251 -0.4473 31 1 -0.3633 -0.8500 -0.5775 32 1 2.7615 3.5322 -1.1439 33 1 1.5313 5.6497 -0.9430 34 1 -1.6520 5.3033 2.1776 35 1 -3.0991 6.4350 -0.3243 36 1 -3.6339 5.0742 0.7544 37 1 -3.9764 6.5914 2.6498 38 1 -4.2016 7.8448 1.3539 39 1 -1.7759 7.6393 2.9077 40 1 -1.7874 8.2443 1.1952 41 1 -1.3208 3.7624 1.6265 42 1 -0.1055 1.6366 1.4254 43 1 2.7435 -1.4430 -0.9278 44 1 3.3421 -0.5675 1.7584 45 1 3.8748 -2.1818 1.1170 46 1 2.0249 -3.0342 2.4802 47 1 0.9911 -0.2540 2.3977 48 1 -1.3137 1.1479 4.3597 49 1 1.7133 -3.4277 0.0813 50 1 0.2775 -2.3339 0.2900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999870307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:56 Heat of formation + Delta-G solvation = 18.849959 kcal Electronic energy + Delta-G solvation = -31199.094166 eV Core-core repulsion = 27193.802171 eV Total energy + Delta-G solvation = -4005.291995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89876 -41.21366 -39.68248 -38.70003 -37.10069 -35.76263 -34.98829 -32.14754 -31.85018 -30.96729 -28.24563 -26.87924 -26.65693 -26.39428 -25.83571 -24.93780 -23.72899 -23.22688 -21.29693 -20.44667 -19.55574 -19.42987 -19.21073 -18.05605 -17.63156 -17.29086 -16.68022 -16.59244 -16.41423 -15.94863 -15.71739 -15.59012 -15.34177 -15.24066 -14.90011 -14.79582 -14.38819 -13.89771 -13.73679 -13.55628 -13.43248 -13.35541 -13.28466 -13.09798 -13.04653 -12.77771 -12.58502 -12.51406 -12.33473 -12.19700 -12.08287 -11.76020 -11.72876 -11.67310 -11.33571 -11.24048 -11.13297 -10.83160 -10.75176 -10.03874 -9.53173 -9.18369 -8.92389 -7.87412 -5.14853 -0.02773 0.35406 1.49251 1.52463 1.59482 1.77274 2.05192 2.18435 2.59234 2.77108 3.42814 3.46642 3.53395 3.56774 3.75101 3.75832 3.82338 3.87275 3.88182 3.95705 3.95935 4.20005 4.26190 4.27147 4.37450 4.39133 4.52619 4.59529 4.65091 4.77169 4.77817 4.85701 4.90039 4.97948 5.00564 5.02038 5.02282 5.07765 5.10091 5.14327 5.18825 5.28695 5.36803 5.37409 5.41246 5.44127 5.58640 5.68207 5.78752 6.34663 6.38774 6.42206 7.16764 7.41312 8.14128 8.41671 9.34179 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.004116 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.163178 B = 6801.001261 C = 9422.998055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.581 5.581 3 C 0.559 3.441 4 O -0.579 6.579 5 C -0.193 4.193 6 C -0.028 4.028 7 C -0.165 4.165 8 C 0.153 3.847 9 O -0.304 6.304 10 C 0.032 3.968 11 C -0.155 4.155 12 C -0.130 4.130 13 C -0.126 4.126 14 C -0.217 4.217 15 C -0.042 4.042 16 C 0.125 3.875 17 C -0.154 4.154 18 C 0.146 3.854 19 N -0.716 5.716 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.059 4.059 23 N -0.951 5.951 24 Si 0.963 3.037 25 H -0.274 1.274 26 H -0.302 1.302 27 H -0.293 1.293 28 C -0.157 4.157 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.159 0.841 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.088 0.912 44 H 0.035 0.965 45 H 0.114 0.886 46 H 0.062 0.938 47 H 0.377 0.623 48 H 0.250 0.750 49 H 0.117 0.883 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 9.077 -10.004 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.311 5.311 3 C 0.349 3.651 4 O -0.461 6.461 5 C -0.197 4.197 6 C -0.047 4.047 7 C -0.183 4.183 8 C 0.106 3.894 9 O -0.217 6.217 10 C -0.024 4.024 11 C -0.193 4.193 12 C -0.167 4.167 13 C -0.164 4.164 14 C -0.236 4.236 15 C -0.060 4.060 16 C 0.022 3.978 17 C -0.193 4.193 18 C 0.036 3.964 19 N -0.356 5.356 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.252 4.252 23 N -0.601 5.601 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.230 1.230 27 H -0.220 1.220 28 C -0.198 4.198 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.106 0.894 44 H 0.054 0.946 45 H 0.132 0.868 46 H 0.080 0.920 47 H 0.212 0.788 48 H 0.059 0.941 49 H 0.135 0.865 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.151 9.111 -10.016 13.902 hybrid contribution -0.664 -0.201 1.181 1.370 sum -3.815 8.910 -8.835 13.115 Atomic orbital electron populations 1.22292 0.78575 1.02776 1.03440 1.47413 1.07476 1.04866 1.71386 1.18507 0.86624 0.84221 0.75716 1.90681 1.14850 1.88006 1.52555 1.19829 0.99070 0.94497 1.06270 1.21075 0.97878 0.90072 0.95648 1.20514 0.94919 0.99303 1.03607 1.19375 0.91384 0.85008 0.93589 1.86086 1.44359 1.30645 1.60624 1.24622 0.84399 1.00967 0.92388 1.23544 0.94495 1.00997 1.00236 1.22676 0.95657 0.99207 0.99185 1.23214 0.96234 0.94598 1.02320 1.21271 1.04047 0.92710 1.05542 1.21746 0.91781 0.99067 0.93410 1.21946 0.94470 0.83550 0.97804 1.23680 0.98207 1.00555 0.96886 1.21436 0.90129 0.92860 0.91965 1.42437 1.40490 1.05503 1.47169 1.19586 1.10254 0.92743 1.14698 0.90940 1.25292 1.01971 0.95668 1.02275 1.69745 1.42493 1.01099 1.46717 0.85239 0.79117 0.77579 0.78694 1.19841 1.23036 1.21992 1.24049 1.00180 0.96899 0.98666 0.91144 0.90696 0.90035 0.83806 0.82371 0.88668 0.88741 0.90961 0.89184 0.88693 0.89972 0.88339 0.84503 0.84229 0.89435 0.94623 0.86766 0.92039 0.78838 0.94104 0.86520 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.47 7.17 127.77 0.92 3.38 16 2 N -0.58 -21.24 2.12 -822.99 -1.74 -22.99 16 3 C 0.56 22.30 6.99 86.71 0.61 22.91 16 4 O -0.58 -25.68 16.07 -3.98 -0.06 -25.75 16 5 C -0.19 -7.04 5.19 -20.08 -0.10 -7.15 16 6 C -0.03 -0.86 9.60 22.50 0.22 -0.65 16 7 C -0.17 -4.52 9.97 22.32 0.22 -4.30 16 8 C 0.15 4.46 6.69 22.63 0.15 4.61 16 9 O -0.30 -7.92 10.13 -90.31 -0.92 -8.84 16 10 C 0.03 0.70 3.67 31.12 0.11 0.81 16 11 C -0.16 -2.80 7.93 31.18 0.25 -2.55 16 12 C -0.13 -1.84 8.09 31.18 0.25 -1.58 16 13 C -0.13 -2.08 7.91 31.12 0.25 -1.83 16 14 C -0.22 -7.06 9.00 22.32 0.20 -6.86 16 15 C -0.04 -1.53 7.58 22.51 0.17 -1.36 16 16 C 0.13 4.21 4.09 45.58 0.19 4.40 16 17 C -0.15 -5.56 7.16 31.12 0.22 -5.34 16 18 C 0.15 5.66 4.53 45.52 0.21 5.86 16 19 N -0.72 -34.19 3.83 -320.44 -1.23 -35.42 16 20 C -0.24 -12.51 9.98 84.03 0.84 -11.67 16 21 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 22 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 23 N -0.95 -52.21 13.06 21.65 0.28 -51.92 16 24 Si 0.96 43.70 29.55 68.60 2.03 45.72 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 28 C -0.16 -4.89 7.17 31.18 0.22 -4.67 16 29 H 0.07 2.96 4.91 -2.39 -0.01 2.95 16 30 H 0.07 2.41 5.74 -2.39 -0.01 2.40 16 31 H 0.08 2.45 6.71 -2.39 -0.02 2.43 16 32 H 0.14 4.07 7.98 -2.91 -0.02 4.05 16 33 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.10 2.28 5.94 -2.39 -0.01 2.27 16 35 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.14 4.24 5.89 -2.91 -0.02 4.22 16 42 H 0.14 5.92 5.36 -2.91 -0.02 5.90 16 43 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.03 1.55 7.40 -2.38 -0.02 1.53 16 45 H 0.11 3.37 8.14 -2.39 -0.02 3.36 16 46 H 0.06 2.34 8.13 -2.38 -0.02 2.32 16 47 H 0.38 19.37 5.77 -92.71 -0.54 18.83 16 48 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 49 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 50 H 0.07 2.37 5.96 -2.38 -0.01 2.35 16 Total: -1.00 -63.44 391.57 4.18 -59.27 By element: Atomic # 1 Polarization: 48.12 SS G_CDS: 0.43 Total: 48.55 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.38 Total: -8.63 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -2.69 Total: -110.33 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.98 Total: -34.58 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.44 4.18 -59.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999870307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.118 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds