Wall clock time and date at job start Wed Apr 1 2020 03:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00109 * 2 1 4 4 O 1.21598 * 120.00083 * 185.59391 * 3 2 1 5 5 C 1.47537 * 120.00156 * 5.59143 * 3 2 1 6 6 C 1.39711 * 120.19086 * 42.78050 * 5 3 2 7 7 C 1.37782 * 119.90499 * 179.78904 * 6 5 3 8 8 C 1.38547 * 120.30260 * 0.48941 * 7 6 5 9 9 C 1.38054 * 120.39046 * 359.74081 * 8 7 6 10 10 C 1.38699 * 120.08346 * 0.02562 * 9 8 7 11 11 O 1.35658 * 120.15183 * 179.97438 * 10 9 8 12 12 C 1.42904 * 116.99678 * 0.02771 * 11 10 9 13 13 C 1.53002 * 109.47084 * 179.97438 * 12 11 10 14 14 C 1.52995 * 117.49904 * 243.62246 * 13 12 11 15 15 C 1.52998 * 117.49827 * 174.99358 * 13 12 11 16 16 C 1.46503 * 119.99622 * 179.97438 * 2 1 3 17 17 C 1.53778 * 113.69074 * 19.09271 * 16 2 1 18 18 C 1.53780 * 87.08090 * 89.12918 * 17 16 2 19 19 N 1.46497 * 113.60970 * 270.88152 * 18 17 16 20 20 C 1.36934 * 120.00026 * 256.59762 * 19 18 17 21 21 H 1.08007 * 120.00294 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00412 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99761 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00291 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.46888 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47179 * 119.99958 * 24 22 20 27 27 H 1.48502 * 109.46603 * 239.99550 * 24 22 20 28 28 C 1.53778 * 113.61406 * 116.63205 * 16 2 1 29 29 H 1.08995 * 109.47188 * 265.83276 * 1 2 3 30 30 H 1.09004 * 109.46918 * 25.82583 * 1 2 3 31 31 H 1.09003 * 109.47236 * 145.82811 * 1 2 3 32 32 H 1.07995 * 120.04522 * 0.02562 * 6 5 3 33 33 H 1.08002 * 119.84586 * 180.25162 * 7 6 5 34 34 H 1.08005 * 119.80153 * 179.76174 * 8 7 6 35 35 H 1.07997 * 119.95312 * 179.97438 * 9 8 7 36 36 H 1.08995 * 109.46917 * 299.99437 * 12 11 10 37 37 H 1.08993 * 109.47252 * 59.99443 * 12 11 10 38 38 H 1.09008 * 115.54675 * 29.32755 * 13 12 11 39 39 H 1.08996 * 117.49888 * 359.97438 * 14 13 12 40 40 H 1.09000 * 117.50050 * 145.02673 * 14 13 12 41 41 H 1.08996 * 117.49725 * 214.98079 * 15 13 12 42 42 H 1.08997 * 117.49603 * 0.02562 * 15 13 12 43 43 H 1.09006 * 112.84537 * 247.82616 * 16 2 1 44 44 H 1.09007 * 113.61224 * 203.67537 * 17 16 2 45 45 H 1.08998 * 113.61774 * 334.57896 * 17 16 2 46 46 H 1.09000 * 113.69253 * 139.99148 * 18 17 16 47 47 H 0.97000 * 119.99916 * 76.60036 * 19 18 17 48 48 H 0.97006 * 120.00123 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.61445 * 25.33901 * 28 16 2 50 50 H 1.08997 * 113.61669 * 156.25301 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3505 1.1696 -0.1026 5 6 1.4065 2.4418 0.1245 6 6 0.3612 2.5647 1.0432 7 6 -0.3159 3.7592 1.1577 8 6 0.0282 4.8372 0.3583 9 6 1.0559 4.7280 -0.5570 10 6 1.7515 3.5346 -0.6822 11 8 2.7613 3.4256 -1.5815 12 6 3.0566 4.5813 -2.3685 13 6 4.2156 4.2695 -3.3174 14 6 5.5130 5.0588 -3.1313 15 6 4.6080 5.3463 -4.3311 16 6 2.1974 -1.2688 0.0006 17 6 1.3539 -2.4694 -0.4595 18 6 1.8135 -2.1437 -1.8904 19 7 0.9384 -1.1974 -2.5867 20 6 0.0608 -1.6477 -3.5364 21 1 0.0134 -2.7007 -3.7720 22 6 -0.7681 -0.7510 -4.1966 23 7 -0.7108 0.5321 -3.9092 24 14 -1.9658 -1.3656 -5.4918 25 1 -1.8356 -2.8386 -5.6270 26 1 -3.3527 -1.0260 -5.0842 27 1 -1.6605 -0.7204 -6.7940 28 6 3.0524 -1.4871 -1.2589 29 1 -0.3633 -0.0747 1.0249 30 1 -0.3633 0.9251 -0.4477 31 1 -0.3634 -0.8503 -0.5772 32 1 0.0868 1.7258 1.6655 33 1 -1.1212 3.8544 1.8711 34 1 -0.5105 5.7686 0.4521 35 1 1.3180 5.5727 -1.1768 36 1 2.1770 4.8604 -2.9483 37 1 3.3362 5.4057 -1.7127 38 1 4.2998 3.2288 -3.6307 39 1 5.5407 5.8005 -2.3330 40 1 6.4511 4.5376 -3.3220 41 1 4.9506 5.0141 -5.3110 42 1 4.0406 6.2770 -4.3216 43 1 2.7374 -1.4454 0.9309 44 1 1.7203 -3.4275 -0.0906 45 1 0.2833 -2.3362 -0.3038 46 1 2.0436 -3.0258 -2.4880 47 1 0.9806 -0.2517 -2.3749 48 1 -1.2897 1.1589 -4.3708 49 1 3.3530 -0.5608 -1.7485 50 1 3.8831 -2.1766 -1.1086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999870973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:04 Heat of formation + Delta-G solvation = 36.920190 kcal Electronic energy + Delta-G solvation = -31690.896924 eV Core-core repulsion = 27686.388513 eV Total energy + Delta-G solvation = -4004.508411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.54425 -39.52162 -37.97311 -37.12139 -36.50918 -34.06340 -33.11519 -30.98191 -29.99140 -29.78855 -27.41809 -26.72042 -24.97137 -24.42911 -23.53583 -22.53046 -22.44569 -21.87614 -20.63338 -19.69111 -18.22738 -17.64668 -17.37317 -16.57932 -16.35076 -15.86132 -15.68203 -15.13560 -14.90761 -14.89193 -14.64990 -14.38980 -14.01580 -13.63733 -13.57449 -13.00463 -12.91666 -12.83042 -12.64540 -12.38615 -11.99274 -11.70758 -11.67042 -11.65736 -11.38975 -11.24874 -11.22726 -11.02636 -10.86963 -10.85647 -10.70678 -10.50375 -10.16538 -9.99759 -9.97265 -9.73384 -9.55298 -9.15277 -8.86577 -8.76916 -8.07299 -7.92380 -6.93252 -5.75979 -3.04813 1.17940 1.56693 3.18592 3.21785 3.41637 3.47952 3.49258 3.49982 3.77662 4.02775 4.58390 4.63913 4.78282 4.80622 4.88793 4.97589 5.01374 5.14124 5.21369 5.29385 5.33035 5.42516 5.47881 5.53137 5.53517 5.55657 5.57971 5.66929 5.79408 5.83643 5.91482 5.97242 5.98702 6.01169 6.05730 6.20965 6.24978 6.32234 6.37066 6.42377 6.47667 6.54274 6.72928 6.77620 6.83557 6.89034 7.00480 7.28955 7.58165 7.73113 7.96442 8.42351 8.75450 9.53862 10.13497 10.49943 11.45229 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007771 B = 0.004438 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.475483 B = 6307.914413 C = 7039.555721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.582 5.582 3 C 0.569 3.431 4 O -0.529 6.529 5 C -0.154 4.154 6 C -0.048 4.048 7 C -0.170 4.170 8 C -0.061 4.061 9 C -0.220 4.220 10 C 0.189 3.811 11 O -0.284 6.284 12 C 0.091 3.909 13 C -0.151 4.151 14 C -0.176 4.176 15 C -0.171 4.171 16 C 0.131 3.869 17 C -0.184 4.184 18 C 0.165 3.835 19 N -0.704 5.704 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.010 4.010 23 N -0.925 5.925 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.293 1.293 28 C -0.162 4.162 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.389 0.611 48 H 0.253 0.747 49 H 0.077 0.923 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 8.947 9.104 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.314 5.314 3 C 0.357 3.643 4 O -0.407 6.407 5 C -0.158 4.158 6 C -0.066 4.066 7 C -0.188 4.188 8 C -0.079 4.079 9 C -0.238 4.238 10 C 0.141 3.859 11 O -0.195 6.195 12 C 0.016 3.984 13 C -0.169 4.169 14 C -0.213 4.213 15 C -0.208 4.208 16 C 0.027 3.973 17 C -0.225 4.225 18 C 0.052 3.948 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.573 5.573 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 C -0.202 4.202 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.225 0.775 48 H 0.063 0.937 49 H 0.096 0.904 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.089 8.688 8.828 13.391 hybrid contribution -0.965 0.282 -0.733 1.244 sum 4.124 8.970 8.095 12.767 Atomic orbital electron populations 1.22131 0.78984 1.06033 0.99992 1.47300 1.07071 1.04553 1.72510 1.17930 0.86866 0.82952 0.76561 1.90745 1.13639 1.87099 1.49173 1.19228 1.01081 0.93790 1.01712 1.21230 0.91866 0.97878 0.95645 1.20898 1.02213 0.93343 1.02368 1.21001 0.94857 0.98504 0.93548 1.21146 1.01034 0.97321 1.04345 1.18870 0.86719 0.92457 0.87865 1.86227 1.47998 1.37511 1.47783 1.22314 0.97243 0.86811 0.92068 1.22075 0.95188 0.99157 1.00458 1.23070 0.94887 1.03089 1.00259 1.22972 1.03422 0.99576 0.94797 1.21717 0.94471 0.83623 0.97478 1.24233 1.00604 0.95631 1.02037 1.21156 0.89927 0.93290 0.90417 1.42318 1.42273 1.06099 1.43683 1.19324 1.12271 0.92993 1.12683 0.91118 1.24721 1.00286 0.95377 1.00249 1.69697 1.41877 1.00820 1.44915 0.86168 0.80947 0.77762 0.81607 1.20618 1.21948 1.22022 1.23698 0.97589 1.01926 0.96940 0.94242 0.90332 0.88255 0.84828 0.85618 0.85754 0.85297 0.91381 0.92147 0.86172 0.88775 0.88491 0.88209 0.88701 0.91389 0.90232 0.90321 0.92242 0.77511 0.93695 0.90424 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 7.37 59.85 0.44 1.70 16 2 N -0.58 -10.97 2.09 -174.23 -0.36 -11.33 16 3 C 0.57 11.58 6.82 -12.47 -0.09 11.49 16 4 O -0.53 -12.14 15.00 -8.85 -0.13 -12.27 16 5 C -0.15 -2.80 4.90 -104.84 -0.51 -3.31 16 6 C -0.05 -0.70 7.76 -39.20 -0.30 -1.00 16 7 C -0.17 -2.13 10.02 -39.63 -0.40 -2.52 16 8 C -0.06 -0.75 10.03 -39.53 -0.40 -1.15 16 9 C -0.22 -3.12 9.03 -39.48 -0.36 -3.48 16 10 C 0.19 3.36 6.67 -38.70 -0.26 3.10 16 11 O -0.28 -5.35 9.00 -32.80 -0.30 -5.65 16 12 C 0.09 1.30 5.02 37.16 0.19 1.49 16 13 C -0.15 -2.06 6.06 -90.62 -0.55 -2.61 16 14 C -0.18 -1.94 10.18 -26.73 -0.27 -2.21 16 15 C -0.17 -1.81 10.25 -26.73 -0.27 -2.08 16 16 C 0.13 2.35 4.18 -67.12 -0.28 2.07 16 17 C -0.18 -3.17 7.16 -25.92 -0.19 -3.36 16 18 C 0.16 3.40 4.55 -67.12 -0.31 3.10 16 19 N -0.70 -17.62 3.91 -52.64 -0.21 -17.83 16 20 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.09 13.06 55.49 0.72 -26.36 16 24 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 C -0.16 -3.13 7.10 -25.92 -0.18 -3.32 16 29 H 0.04 0.56 7.22 -51.93 -0.37 0.19 16 30 H 0.08 1.51 6.08 -51.93 -0.32 1.20 16 31 H 0.10 1.99 4.72 -51.93 -0.25 1.74 16 32 H 0.13 1.71 6.30 -52.49 -0.33 1.38 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 36 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 37 H 0.06 0.72 7.39 -51.93 -0.38 0.34 16 38 H 0.12 1.92 8.14 -51.92 -0.42 1.49 16 39 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.42 5.74 -51.93 -0.30 1.12 16 46 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 47 H 0.39 10.48 6.13 -40.82 -0.25 10.23 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 49 H 0.08 1.77 7.02 -51.93 -0.36 1.41 16 50 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -32.80 396.46 -10.78 -43.58 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -7.48 Total: 16.05 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.98 Total: -9.19 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.15 Total: -55.53 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.43 Total: -17.92 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.80 -10.78 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999870973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.503 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds