Wall clock time and date at job start Wed Apr 1 2020 03:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00109 * 2 1 4 4 O 1.21598 * 120.00083 * 185.59391 * 3 2 1 5 5 C 1.47537 * 120.00156 * 5.59143 * 3 2 1 6 6 C 1.39711 * 120.19086 * 42.78050 * 5 3 2 7 7 C 1.37782 * 119.90499 * 179.78904 * 6 5 3 8 8 C 1.38547 * 120.30260 * 0.48941 * 7 6 5 9 9 C 1.38054 * 120.39046 * 359.74081 * 8 7 6 10 10 C 1.38699 * 120.08346 * 0.02562 * 9 8 7 11 11 O 1.35658 * 120.15183 * 179.97438 * 10 9 8 12 12 C 1.42904 * 116.99678 * 0.02771 * 11 10 9 13 13 C 1.53002 * 109.47084 * 179.97438 * 12 11 10 14 14 C 1.52995 * 117.49904 * 243.62246 * 13 12 11 15 15 C 1.52998 * 117.49827 * 174.99358 * 13 12 11 16 16 C 1.46503 * 119.99622 * 179.97438 * 2 1 3 17 17 C 1.53778 * 113.69074 * 19.09271 * 16 2 1 18 18 C 1.53780 * 87.08090 * 89.12918 * 17 16 2 19 19 N 1.46497 * 113.60970 * 270.88152 * 18 17 16 20 20 C 1.36934 * 120.00026 * 256.59762 * 19 18 17 21 21 H 1.08007 * 120.00294 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00412 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99761 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00291 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.46888 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47179 * 119.99958 * 24 22 20 27 27 H 1.48502 * 109.46603 * 239.99550 * 24 22 20 28 28 C 1.53778 * 113.61406 * 116.63205 * 16 2 1 29 29 H 1.08995 * 109.47188 * 265.83276 * 1 2 3 30 30 H 1.09004 * 109.46918 * 25.82583 * 1 2 3 31 31 H 1.09003 * 109.47236 * 145.82811 * 1 2 3 32 32 H 1.07995 * 120.04522 * 0.02562 * 6 5 3 33 33 H 1.08002 * 119.84586 * 180.25162 * 7 6 5 34 34 H 1.08005 * 119.80153 * 179.76174 * 8 7 6 35 35 H 1.07997 * 119.95312 * 179.97438 * 9 8 7 36 36 H 1.08995 * 109.46917 * 299.99437 * 12 11 10 37 37 H 1.08993 * 109.47252 * 59.99443 * 12 11 10 38 38 H 1.09008 * 115.54675 * 29.32755 * 13 12 11 39 39 H 1.08996 * 117.49888 * 359.97438 * 14 13 12 40 40 H 1.09000 * 117.50050 * 145.02673 * 14 13 12 41 41 H 1.08996 * 117.49725 * 214.98079 * 15 13 12 42 42 H 1.08997 * 117.49603 * 0.02562 * 15 13 12 43 43 H 1.09006 * 112.84537 * 247.82616 * 16 2 1 44 44 H 1.09007 * 113.61224 * 203.67537 * 17 16 2 45 45 H 1.08998 * 113.61774 * 334.57896 * 17 16 2 46 46 H 1.09000 * 113.69253 * 139.99148 * 18 17 16 47 47 H 0.97000 * 119.99916 * 76.60036 * 19 18 17 48 48 H 0.97006 * 120.00123 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.61445 * 25.33901 * 28 16 2 50 50 H 1.08997 * 113.61669 * 156.25301 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3505 1.1696 -0.1026 5 6 1.4065 2.4418 0.1245 6 6 0.3612 2.5647 1.0432 7 6 -0.3159 3.7592 1.1577 8 6 0.0282 4.8372 0.3583 9 6 1.0559 4.7280 -0.5570 10 6 1.7515 3.5346 -0.6822 11 8 2.7613 3.4256 -1.5815 12 6 3.0566 4.5813 -2.3685 13 6 4.2156 4.2695 -3.3174 14 6 5.5130 5.0588 -3.1313 15 6 4.6080 5.3463 -4.3311 16 6 2.1974 -1.2688 0.0006 17 6 1.3539 -2.4694 -0.4595 18 6 1.8135 -2.1437 -1.8904 19 7 0.9384 -1.1974 -2.5867 20 6 0.0608 -1.6477 -3.5364 21 1 0.0134 -2.7007 -3.7720 22 6 -0.7681 -0.7510 -4.1966 23 7 -0.7108 0.5321 -3.9092 24 14 -1.9658 -1.3656 -5.4918 25 1 -1.8356 -2.8386 -5.6270 26 1 -3.3527 -1.0260 -5.0842 27 1 -1.6605 -0.7204 -6.7940 28 6 3.0524 -1.4871 -1.2589 29 1 -0.3633 -0.0747 1.0249 30 1 -0.3633 0.9251 -0.4477 31 1 -0.3634 -0.8503 -0.5772 32 1 0.0868 1.7258 1.6655 33 1 -1.1212 3.8544 1.8711 34 1 -0.5105 5.7686 0.4521 35 1 1.3180 5.5727 -1.1768 36 1 2.1770 4.8604 -2.9483 37 1 3.3362 5.4057 -1.7127 38 1 4.2998 3.2288 -3.6307 39 1 5.5407 5.8005 -2.3330 40 1 6.4511 4.5376 -3.3220 41 1 4.9506 5.0141 -5.3110 42 1 4.0406 6.2770 -4.3216 43 1 2.7374 -1.4454 0.9309 44 1 1.7203 -3.4275 -0.0906 45 1 0.2833 -2.3362 -0.3038 46 1 2.0436 -3.0258 -2.4880 47 1 0.9806 -0.2517 -2.3749 48 1 -1.2897 1.1589 -4.3708 49 1 3.3530 -0.5608 -1.7485 50 1 3.8831 -2.1766 -1.1086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999870973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:03 Heat of formation + Delta-G solvation = 19.302854 kcal Electronic energy + Delta-G solvation = -31691.660869 eV Core-core repulsion = 27686.388513 eV Total energy + Delta-G solvation = -4005.272356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.88743 -40.87087 -39.22811 -38.49564 -37.58333 -35.73374 -34.95107 -32.30103 -31.64303 -31.09107 -28.51053 -28.20207 -26.67411 -25.89376 -25.24821 -23.80226 -23.36965 -23.12316 -21.77658 -21.06482 -19.65170 -19.32257 -18.92876 -17.92892 -17.70720 -17.14623 -16.96975 -16.67304 -16.56655 -16.03847 -15.90944 -15.64636 -15.32095 -15.22670 -14.93503 -14.74376 -14.44408 -14.08208 -13.83847 -13.66300 -13.51103 -13.32479 -13.04985 -12.78528 -12.76667 -12.68020 -12.52670 -12.47597 -12.36572 -12.23607 -12.09617 -11.98310 -11.69055 -11.63106 -11.47083 -11.18819 -10.96429 -10.86025 -10.63552 -9.93655 -9.47868 -9.17208 -8.94831 -7.88961 -5.18296 0.03448 0.45975 1.46918 1.48235 1.57545 1.77047 2.09410 2.14879 2.56975 2.80205 2.85948 3.40658 3.47182 3.63467 3.76007 3.81781 3.83936 3.87320 3.95825 3.99342 4.04248 4.10411 4.24842 4.25598 4.34320 4.39023 4.45158 4.45786 4.51809 4.58926 4.66163 4.68798 4.83768 4.88989 4.91539 4.92150 4.96071 5.09657 5.11670 5.15872 5.16572 5.23121 5.34676 5.35797 5.45479 5.48713 5.54832 5.81335 5.83013 6.30903 6.39190 6.52251 7.25708 7.37467 8.14020 8.39793 9.32624 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007771 B = 0.004438 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.475483 B = 6307.914413 C = 7039.555721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.582 5.582 3 C 0.561 3.439 4 O -0.571 6.571 5 C -0.193 4.193 6 C -0.051 4.051 7 C -0.163 4.163 8 C -0.052 4.052 9 C -0.224 4.224 10 C 0.155 3.845 11 O -0.325 6.325 12 C 0.090 3.910 13 C -0.188 4.188 14 C -0.165 4.165 15 C -0.149 4.149 16 C 0.127 3.873 17 C -0.156 4.156 18 C 0.144 3.856 19 N -0.716 5.716 20 C -0.242 4.242 21 H 0.076 0.924 22 C -0.067 4.067 23 N -0.958 5.958 24 Si 0.968 3.032 25 H -0.268 1.268 26 H -0.291 1.291 27 H -0.301 1.301 28 C -0.157 4.157 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.148 0.852 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.150 0.850 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.376 0.624 48 H 0.247 0.753 49 H 0.032 0.968 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 9.485 10.633 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.314 5.314 3 C 0.351 3.649 4 O -0.452 6.452 5 C -0.196 4.196 6 C -0.069 4.069 7 C -0.181 4.181 8 C -0.070 4.070 9 C -0.243 4.243 10 C 0.107 3.893 11 O -0.238 6.238 12 C 0.016 3.984 13 C -0.207 4.207 14 C -0.202 4.202 15 C -0.186 4.186 16 C 0.024 3.976 17 C -0.196 4.196 18 C 0.034 3.966 19 N -0.356 5.356 20 C -0.373 4.373 21 H 0.094 0.906 22 C -0.260 4.260 23 N -0.608 5.608 24 Si 0.798 3.202 25 H -0.192 1.192 26 H -0.218 1.218 27 H -0.229 1.229 28 C -0.196 4.196 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.166 0.834 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.107 0.893 44 H 0.137 0.863 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.210 0.790 48 H 0.056 0.944 49 H 0.051 0.949 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.736 9.169 10.380 14.345 hybrid contribution -0.489 0.097 -1.203 1.302 sum 3.247 9.266 9.177 13.440 Atomic orbital electron populations 1.22037 0.78327 1.03918 1.01771 1.47403 1.07487 1.04625 1.71866 1.18436 0.86662 0.84121 0.75724 1.90692 1.15393 1.87794 1.51271 1.19388 1.03063 0.93083 1.04107 1.21468 0.90998 0.99534 0.94921 1.21387 1.02134 0.92212 1.02359 1.21545 0.93636 1.00059 0.91794 1.21471 1.01110 0.96602 1.05077 1.19311 0.87563 0.93926 0.88453 1.86178 1.48977 1.39895 1.48741 1.22483 0.97342 0.86439 0.92126 1.22034 0.97343 0.98182 1.03120 1.23174 0.93724 1.02290 1.00969 1.23099 1.02215 0.98768 0.94501 1.21876 0.94426 0.83766 0.97576 1.24030 1.00338 0.96959 0.98313 1.21470 0.90291 0.92723 0.92142 1.42428 1.42829 1.06164 1.44147 1.19656 1.11989 0.93153 1.12550 0.90638 1.25454 1.02378 0.95575 1.02568 1.69872 1.42883 1.01851 1.46162 0.85155 0.78706 0.77744 0.78599 1.19245 1.21822 1.22891 1.23683 0.98187 1.00380 0.97400 0.90180 0.92312 0.90477 0.83395 0.81781 0.81636 0.83244 0.91438 0.89739 0.90125 0.87114 0.88248 0.87632 0.86518 0.89342 0.86330 0.90727 0.92013 0.79014 0.94383 0.94866 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.91 7.37 127.77 0.94 3.86 16 2 N -0.58 -22.46 2.09 -823.40 -1.72 -24.18 16 3 C 0.56 24.07 6.82 86.70 0.59 24.66 16 4 O -0.57 -28.09 15.00 9.49 0.14 -27.95 16 5 C -0.19 -7.27 4.90 -20.01 -0.10 -7.37 16 6 C -0.05 -1.45 7.76 22.52 0.17 -1.28 16 7 C -0.16 -3.63 10.02 22.24 0.22 -3.40 16 8 C -0.05 -1.15 10.03 22.30 0.22 -0.93 16 9 C -0.22 -6.23 9.03 22.34 0.20 -6.03 16 10 C 0.15 5.76 6.67 22.84 0.15 5.92 16 11 O -0.32 -13.33 9.00 -76.22 -0.69 -14.01 16 12 C 0.09 2.74 5.02 71.98 0.36 3.10 16 13 C -0.19 -5.55 6.06 -10.80 -0.07 -5.62 16 14 C -0.16 -3.64 10.18 30.60 0.31 -3.32 16 15 C -0.15 -3.11 10.25 30.60 0.31 -2.79 16 16 C 0.13 4.52 4.18 45.51 0.19 4.71 16 17 C -0.16 -5.12 7.16 31.12 0.22 -4.89 16 18 C 0.14 5.99 4.55 45.52 0.21 6.20 16 19 N -0.72 -37.03 3.91 -320.44 -1.25 -38.28 16 20 C -0.24 -13.39 9.98 84.03 0.84 -12.55 16 21 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 23 N -0.96 -58.07 13.06 21.65 0.28 -57.79 16 24 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 28 C -0.16 -6.21 7.10 31.12 0.22 -5.99 16 29 H 0.08 2.15 7.22 -2.39 -0.02 2.13 16 30 H 0.06 2.33 6.08 -2.39 -0.01 2.32 16 31 H 0.08 3.12 4.72 -2.39 -0.01 3.10 16 32 H 0.15 3.58 6.30 -2.91 -0.02 3.56 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.15 3.35 6.30 -2.91 -0.02 3.33 16 36 H 0.07 1.95 7.66 -2.39 -0.02 1.93 16 37 H 0.08 2.04 7.39 -2.39 -0.02 2.02 16 38 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 39 H 0.11 2.06 8.03 -2.39 -0.02 2.04 16 40 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 44 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 45 H 0.07 2.57 5.74 -2.39 -0.01 2.56 16 46 H 0.06 2.51 8.12 -2.39 -0.02 2.49 16 47 H 0.38 21.35 6.13 -92.71 -0.57 20.78 16 48 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 49 H 0.03 1.61 7.02 -2.39 -0.02 1.59 16 50 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -77.43 396.46 4.66 -72.77 By element: Atomic # 1 Polarization: 50.05 SS G_CDS: 0.39 Total: 50.44 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.48 Total: -9.06 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -2.69 Total: -120.25 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.54 Total: -41.97 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -77.43 4.66 -72.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999870973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.073 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds