Wall clock time and date at job start Wed Apr 1 2020 02:55:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42899 * 109.47455 * 2 1
4 4 C 1.35910 * 117.00087 * 180.02562 * 3 2 1
5 5 C 1.38490 * 119.98240 * 0.02562 * 4 3 2
6 6 C 1.39490 * 119.79173 * 180.02562 * 5 4 3
7 7 C 1.47864 * 120.11683 * 180.02562 * 6 5 4
8 8 O 1.21551 * 120.00184 * 359.97438 * 7 6 5
9 9 N 1.34773 * 119.99835 * 179.97438 * 7 6 5
10 10 C 1.46504 * 119.99907 * 179.72227 * 9 7 6
11 11 C 1.50698 * 109.47168 * 180.27273 * 10 9 7
12 12 C 1.29456 * 117.69241 * 94.99972 * 11 10 9
13 13 C 1.50328 * 123.65013 * 180.86017 * 12 11 10
14 14 N 1.47009 * 109.16356 * 349.02070 * 13 12 11
15 15 C 1.36936 * 121.37430 * 222.96902 * 14 13 12
16 16 H 1.07994 * 120.00158 * 155.98340 * 15 14 13
17 17 C 1.38816 * 119.99627 * 335.97998 * 15 14 13
18 18 N 1.31616 * 120.00470 * 344.49529 * 17 15 14
19 19 Si 1.86800 * 119.99640 * 164.49763 * 17 15 14
20 20 H 1.48500 * 109.47344 * 94.45427 * 19 17 15
21 21 H 1.48501 * 109.46971 * 214.45606 * 19 17 15
22 22 H 1.48499 * 109.47130 * 334.45349 * 19 17 15
23 23 C 1.47340 * 117.24841 * 42.95259 * 14 13 12
24 24 C 1.49966 * 117.69591 * 274.74327 * 11 10 9
25 25 C 1.39599 * 119.76309 * 0.26557 * 6 5 4
26 26 C 1.37960 * 119.96860 * 359.43563 * 25 6 5
27 27 C 1.38296 * 120.20091 * 0.56784 * 26 25 6
28 28 C 1.50701 * 119.87508 * 179.70089 * 27 26 25
29 29 H 1.09004 * 109.47208 * 59.99323 * 1 2 3
30 30 H 1.08998 * 109.47326 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.46505 * 300.00030 * 1 2 3
32 32 H 1.09003 * 109.46505 * 239.99970 * 2 1 3
33 33 H 1.08998 * 109.46887 * 120.00404 * 2 1 3
34 34 H 1.07997 * 120.10810 * 0.02562 * 5 4 3
35 35 H 0.97002 * 119.99877 * 359.97438 * 9 7 6
36 36 H 1.08997 * 109.46814 * 300.27709 * 10 9 7
37 37 H 1.09000 * 109.47101 * 60.27545 * 10 9 7
38 38 H 1.07996 * 118.17623 * 0.87874 * 12 11 10
39 39 H 1.09004 * 109.52126 * 108.92653 * 13 12 11
40 40 H 1.09001 * 109.51849 * 229.11440 * 13 12 11
41 41 H 0.96998 * 120.00118 * 179.97438 * 18 17 15
42 42 H 1.09003 * 109.77972 * 57.80817 * 23 14 13
43 43 H 1.08998 * 109.77360 * 178.61528 * 23 14 13
44 44 H 1.09003 * 109.31592 * 281.28633 * 24 11 10
45 45 H 1.08997 * 109.31925 * 40.71284 * 24 11 10
46 46 H 1.08003 * 120.01497 * 179.72860 * 25 6 5
47 47 H 1.07995 * 119.90170 * 180.29636 * 26 25 6
48 48 H 1.09001 * 109.46962 * 270.02209 * 28 27 26
49 49 H 1.09001 * 109.47793 * 30.02696 * 28 27 26
50 50 H 1.09004 * 109.46834 * 150.03240 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.3538 1.5253 -0.0005
5 6 4.1971 0.4267 -0.0016
6 6 5.5793 0.6140 -0.0016
7 6 6.4863 -0.5539 -0.0033
8 8 6.0277 -1.6795 -0.0042
9 7 7.8215 -0.3701 -0.0038
10 6 8.7201 -1.5272 0.0006
11 6 10.1503 -1.0524 0.0058
12 6 10.7483 -0.9567 1.1500
13 6 12.1650 -0.4807 1.3122
14 7 12.8048 -0.4104 -0.0095
15 6 14.0837 -0.8582 -0.2072
16 1 14.4029 -1.1629 -1.1929
17 6 14.9700 -0.9203 0.8595
18 7 14.7012 -0.2786 1.9767
19 14 16.5441 -1.9148 0.7091
20 1 17.6536 -1.0241 0.2838
21 1 16.8732 -2.5224 2.0235
22 1 16.3569 -2.9884 -0.2996
23 6 12.0131 0.1613 -1.1127
24 6 10.7824 -0.7297 -1.3153
25 6 6.1033 1.9079 0.0051
26 6 5.2543 2.9953 -0.0001
27 6 3.8841 2.8080 -0.0001
28 6 2.9634 4.0011 0.0010
29 1 -0.3634 0.5140 -0.8899
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3632 0.5139 0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 3.7858 -0.5719 -0.0024
35 1 8.1874 0.5282 -0.0035
36 1 8.5336 -2.1285 0.8904
37 1 8.5406 -2.1300 -0.8896
38 1 10.1990 -1.2346 2.0373
39 1 12.1668 0.5081 1.7708
40 1 12.7132 -1.1781 1.9457
41 1 15.3203 -0.3224 2.7221
42 1 11.7018 1.1742 -0.8570
43 1 12.6094 0.1772 -2.0250
44 1 11.0801 -1.6552 -1.8082
45 1 10.0603 -0.2069 -1.9424
46 1 7.1729 2.0576 0.0095
47 1 5.6609 3.9958 0.0002
48 1 2.7419 4.2881 1.0290
49 1 3.4456 4.8328 -0.5126
50 1 2.0365 3.7452 -0.5124
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001001219575.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:07
Heat of formation + Delta-G solvation = -35.603027 kcal
Electronic energy + Delta-G solvation = -29133.842231 eV
Core-core repulsion = 25126.188977 eV
Total energy + Delta-G solvation = -4007.653254 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.65306 -40.59348 -39.35961 -38.35399 -36.48035 -34.68839 -33.97812 -32.60360
-32.58131 -31.43490 -30.76686 -29.14876 -27.81209 -25.88855 -24.99565 -24.38694
-23.58373 -22.89070 -22.38757 -21.51359 -19.85903 -19.41419 -17.91918 -17.52833
-17.27800 -17.15502 -16.97811 -16.64916 -16.33137 -16.26332 -15.73642 -15.41782
-15.23304 -15.01430 -14.80990 -14.73638 -14.50259 -14.38160 -13.97816 -13.66333
-13.60662 -13.43158 -13.27121 -13.17478 -12.95180 -12.84723 -12.79933 -12.66464
-12.58408 -12.35247 -12.23702 -12.11458 -12.04169 -11.71724 -11.70832 -11.31762
-11.14162 -10.68389 -10.24837 -9.88363 -9.67531 -9.21905 -8.74524 -7.88443
-5.29158 -0.27012 0.33960 1.14504 1.46596 1.48686 1.57971 1.74988
2.15600 2.31886 2.51328 2.76123 3.28959 3.55319 3.61717 3.74505
3.85544 3.91537 3.95700 4.00065 4.04204 4.11432 4.21962 4.34088
4.42193 4.48424 4.53508 4.60426 4.70836 4.72089 4.75229 4.83776
4.84831 4.87507 4.91359 4.91841 5.09883 5.12494 5.21322 5.22457
5.23424 5.25522 5.31517 5.40222 5.42293 5.48253 5.61852 5.70629
5.75851 6.15029 6.31486 6.34156 6.45639 7.08326 7.13854 7.83963
8.37439 9.20148
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.024687 B = 0.001867 C = 0.001795
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1133.917801 B =14994.937724 C =15592.319431
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.044 3.956
3 O -0.318 6.318
4 C 0.108 3.892
5 C -0.161 4.161
6 C -0.118 4.118
7 C 0.555 3.445
8 O -0.582 6.582
9 N -0.703 5.703
10 C 0.167 3.833
11 C -0.140 4.140
12 C -0.139 4.139
13 C 0.204 3.796
14 N -0.615 5.615
15 C -0.256 4.256
16 H 0.070 0.930
17 C -0.054 4.054
18 N -0.938 5.938
19 Si 0.966 3.034
20 H -0.285 1.285
21 H -0.294 1.294
22 H -0.272 1.272
23 C 0.139 3.861
24 C -0.084 4.084
25 C -0.114 4.114
26 C -0.087 4.087
27 C -0.096 4.096
28 C -0.106 4.106
29 H 0.068 0.932
30 H 0.095 0.905
31 H 0.067 0.933
32 H 0.062 0.938
33 H 0.061 0.939
34 H 0.131 0.869
35 H 0.413 0.587
36 H 0.063 0.937
37 H 0.071 0.929
38 H 0.112 0.888
39 H 0.017 0.983
40 H 0.057 0.943
41 H 0.250 0.750
42 H 0.031 0.969
43 H 0.059 0.941
44 H 0.063 0.937
45 H 0.088 0.912
46 H 0.148 0.852
47 H 0.168 0.832
48 H 0.079 0.921
49 H 0.088 0.912
50 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.420 7.276 -4.747 28.763
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.031 4.031
3 O -0.233 6.233
4 C 0.063 3.937
5 C -0.180 4.180
6 C -0.121 4.121
7 C 0.344 3.656
8 O -0.464 6.464
9 N -0.355 5.355
10 C 0.044 3.956
11 C -0.141 4.141
12 C -0.160 4.160
13 C 0.079 3.921
14 N -0.339 5.339
15 C -0.386 4.386
16 H 0.088 0.912
17 C -0.249 4.249
18 N -0.585 5.585
19 Si 0.795 3.205
20 H -0.212 1.212
21 H -0.220 1.220
22 H -0.197 1.197
23 C 0.013 3.987
24 C -0.123 4.123
25 C -0.133 4.133
26 C -0.104 4.104
27 C -0.097 4.097
28 C -0.162 4.162
29 H 0.087 0.913
30 H 0.113 0.887
31 H 0.086 0.914
32 H 0.080 0.920
33 H 0.079 0.921
34 H 0.149 0.851
35 H 0.250 0.750
36 H 0.081 0.919
37 H 0.089 0.911
38 H 0.130 0.870
39 H 0.034 0.966
40 H 0.075 0.925
41 H 0.059 0.941
42 H 0.049 0.951
43 H 0.078 0.922
44 H 0.082 0.918
45 H 0.106 0.894
46 H 0.166 0.834
47 H 0.185 0.815
48 H 0.097 0.903
49 H 0.106 0.894
50 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -27.770 6.600 -4.639 28.919
hybrid contribution 1.491 -0.712 0.413 1.704
sum -26.279 5.888 -4.226 27.260
Atomic orbital electron populations
1.21779 0.90765 1.04113 1.03566 1.23025 0.97357 0.81008 1.01683
1.86050 1.18029 1.30526 1.88668 1.18818 0.82849 0.93561 0.98481
1.21306 0.92990 0.99032 1.04704 1.19640 0.93059 0.93381 1.06042
1.18604 0.82633 0.88727 0.75670 1.90728 1.77128 1.26272 1.52232
1.45937 1.04850 1.10980 1.73710 1.20288 0.85652 0.87609 1.02089
1.20582 0.94220 1.03716 0.95550 1.22971 0.97360 0.97859 0.97777
1.19417 0.87972 0.97317 0.87370 1.44401 1.11943 1.71525 1.06011
1.19506 0.88098 1.35431 0.95584 0.91230 1.25718 1.00850 1.01003
0.97309 1.70157 1.38370 1.44565 1.05446 0.85273 0.79848 0.78716
0.76698 1.21224 1.22019 1.19660 1.21187 0.91986 0.94373 0.91121
1.20732 0.97251 1.00297 0.94021 1.21491 1.01379 0.90713 0.99691
1.21218 0.91056 1.00371 0.97779 1.19887 0.95295 0.92900 1.01619
1.20720 0.98110 0.94155 1.03260 0.91321 0.88654 0.91389 0.91974
0.92063 0.85122 0.74971 0.91851 0.91088 0.87021 0.96559 0.92499
0.94132 0.95100 0.92237 0.91837 0.89393 0.83411 0.81457 0.90272
0.89354 0.91447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16
2 C 0.04 0.66 5.46 71.98 0.39 1.05 16
3 O -0.32 -6.02 9.16 -92.53 -0.85 -6.87 16
4 C 0.11 2.21 6.65 22.46 0.15 2.36 16
5 C -0.16 -3.74 8.58 22.63 0.19 -3.55 16
6 C -0.12 -2.76 5.87 -20.10 -0.12 -2.88 16
7 C 0.55 15.53 7.77 86.79 0.67 16.20 16
8 O -0.58 -20.43 16.35 -3.88 -0.06 -20.49 16
9 N -0.70 -17.43 5.50 -469.69 -2.58 -20.01 16
10 C 0.17 4.67 5.66 85.63 0.48 5.16 16
11 C -0.14 -4.45 5.22 -15.14 -0.08 -4.53 16
12 C -0.14 -5.10 9.47 27.11 0.26 -4.85 16
13 C 0.20 9.69 5.23 85.42 0.45 10.13 16
14 N -0.61 -30.20 3.01 -703.00 -2.11 -32.32 16
15 C -0.26 -13.93 9.71 84.03 0.82 -13.11 16
16 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16
17 C -0.05 -2.99 5.01 84.86 0.43 -2.57 16
18 N -0.94 -54.83 11.08 21.65 0.24 -54.59 16
19 Si 0.97 44.75 29.58 68.60 2.03 46.78 16
20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16
21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16
22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16
23 C 0.14 5.37 6.59 86.32 0.57 5.94 16
24 C -0.08 -2.65 5.95 29.71 0.18 -2.48 16
25 C -0.11 -2.00 9.54 22.53 0.21 -1.79 16
26 C -0.09 -1.26 9.68 22.22 0.21 -1.04 16
27 C -0.10 -1.60 5.90 -19.72 -0.12 -1.72 16
28 C -0.11 -1.23 9.78 71.24 0.70 -0.53 16
29 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16
30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
32 H 0.06 0.93 7.66 -2.39 -0.02 0.92 16
33 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16
34 H 0.13 3.18 5.88 -2.91 -0.02 3.16 16
35 H 0.41 8.46 6.49 -92.71 -0.60 7.86 16
36 H 0.06 1.87 7.78 -2.39 -0.02 1.86 16
37 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16
38 H 0.11 3.68 7.73 -2.91 -0.02 3.66 16
39 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16
40 H 0.06 3.08 6.41 -2.39 -0.02 3.07 16
41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16
42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
43 H 0.06 2.25 7.96 -2.39 -0.02 2.23 16
44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
45 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16
46 H 0.15 1.99 6.40 -2.91 -0.02 1.98 16
47 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16
48 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16
49 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16
50 H 0.07 0.86 7.52 -2.38 -0.02 0.84 16
Total: -1.00 -69.80 405.41 3.14 -66.66
By element:
Atomic # 1 Polarization: 19.37 SS G_CDS: 0.34 Total: 19.72 kcal
Atomic # 6 Polarization: -5.02 SS G_CDS: 6.14 Total: 1.12 kcal
Atomic # 7 Polarization: -102.46 SS G_CDS: -4.46 Total: -106.92 kcal
Atomic # 8 Polarization: -26.45 SS G_CDS: -0.91 Total: -27.36 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal
Total: -69.80 3.14 -66.66 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001001219575.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.058 kcal
(2) G-P(sol) polarization free energy of solvation -69.804 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.603 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds