Wall clock time and date at job start Wed Apr 1 2020 03:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99690 * 2 1 4 4 O 1.21554 * 119.99698 * 185.06033 * 3 2 1 5 5 C 1.47843 * 120.00303 * 5.05699 * 3 2 1 6 6 C 1.39600 * 120.22437 * 320.73357 * 5 3 2 7 7 C 1.37754 * 119.74293 * 180.02562 * 6 5 3 8 8 C 1.38810 * 120.50934 * 359.97438 * 7 6 5 9 9 C 1.38077 * 119.99904 * 359.84779 * 8 7 6 10 10 C 1.38331 * 120.02451 * 0.23427 * 9 8 7 11 11 C 1.50768 * 121.33675 * 180.53538 * 9 8 7 12 12 C 1.52964 * 109.77498 * 342.91343 * 11 9 8 13 13 O 1.42885 * 108.38826 * 49.22186 * 12 11 9 14 14 C 1.42706 * 113.33514 * 289.18131 * 13 12 11 15 15 C 1.46500 * 119.99916 * 179.97438 * 2 1 3 16 16 C 1.53042 * 109.45771 * 60.07580 * 15 2 1 17 17 C 1.53190 * 109.31146 * 178.61630 * 16 15 2 18 18 N 1.46922 * 108.78137 * 54.62915 * 17 16 15 19 19 C 1.36930 * 120.63056 * 126.41390 * 18 17 16 20 20 H 1.08000 * 120.00038 * 331.10675 * 19 18 17 21 21 C 1.38815 * 119.99984 * 151.11311 * 19 18 17 22 22 N 1.31621 * 120.00073 * 344.96740 * 21 19 18 23 23 Si 1.86799 * 120.00190 * 164.96421 * 21 19 18 24 24 H 1.48506 * 109.46956 * 89.99741 * 23 21 19 25 25 H 1.48495 * 109.47277 * 209.99823 * 23 21 19 26 26 H 1.48501 * 109.47371 * 330.00168 * 23 21 19 27 27 C 1.46933 * 118.73701 * 306.39454 * 18 17 16 28 28 C 1.53035 * 109.46251 * 300.00333 * 15 2 1 29 29 H 1.08997 * 109.46768 * 84.17188 * 1 2 3 30 30 H 1.09003 * 109.47112 * 204.17063 * 1 2 3 31 31 H 1.09007 * 109.47245 * 324.17419 * 1 2 3 32 32 H 1.08003 * 120.13161 * 0.09113 * 6 5 3 33 33 H 1.07995 * 119.74261 * 179.97438 * 7 6 5 34 34 H 1.07995 * 119.91421 * 179.83920 * 10 9 8 35 35 H 1.09005 * 109.42618 * 103.00427 * 11 9 8 36 36 H 1.08998 * 109.42357 * 222.88866 * 11 9 8 37 37 H 1.08997 * 109.64232 * 168.94370 * 12 11 9 38 38 H 1.08998 * 109.63961 * 289.56989 * 12 11 9 39 39 H 1.09001 * 109.33750 * 291.73060 * 14 13 12 40 40 H 1.09002 * 109.33930 * 172.05980 * 14 13 12 41 41 H 1.08995 * 109.45759 * 180.02562 * 15 2 1 42 42 H 1.09008 * 109.49382 * 298.55915 * 16 15 2 43 43 H 1.08997 * 109.49948 * 58.65628 * 16 15 2 44 44 H 1.09004 * 109.58249 * 294.84127 * 17 16 15 45 45 H 1.09000 * 109.70573 * 174.48855 * 17 16 15 46 46 H 0.96994 * 119.99929 * 180.02562 * 22 21 19 47 47 H 1.08991 * 109.58825 * 293.81904 * 27 18 17 48 48 H 1.09005 * 109.70042 * 173.46102 * 27 18 17 49 49 H 1.08999 * 109.49747 * 301.33930 * 28 15 2 50 50 H 1.09002 * 109.49899 * 61.43280 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3508 1.1693 -0.0929 5 6 1.4040 2.4451 0.1129 6 6 0.1892 2.6183 -0.5528 7 6 -0.4870 3.8133 -0.4412 8 6 0.0300 4.8463 0.3285 9 6 1.2293 4.6793 0.9921 10 6 1.9184 3.4845 0.8863 11 6 1.8125 5.7767 1.8457 12 6 1.1447 7.1095 1.5027 13 8 -0.2714 6.9196 1.5118 14 6 -0.7438 6.1366 0.4162 15 6 2.1975 -1.2687 0.0006 16 6 1.8290 -2.0707 -1.2497 17 6 2.6225 -3.3810 -1.2633 18 7 2.3850 -4.0910 0.0009 19 6 1.9520 -5.3900 0.0007 20 1 1.3531 -5.7595 -0.8186 21 6 2.2827 -6.2320 1.0536 22 7 3.2386 -5.8927 1.8924 23 14 1.3712 -7.8467 1.2802 24 1 2.0707 -8.9197 0.5287 25 1 1.3343 -8.1961 2.7230 26 1 -0.0161 -7.7080 0.7689 27 6 2.6212 -3.3807 1.2652 28 6 1.8276 -2.0705 1.2505 29 1 -0.3633 0.1044 -1.0223 30 1 -0.3633 -0.9376 0.4208 31 1 -0.3634 0.8333 0.6015 32 1 -0.2195 1.8182 -1.1522 33 1 -1.4265 3.9474 -0.9565 34 1 2.8575 3.3568 1.4040 35 1 1.6430 5.5466 2.8976 36 1 2.8838 5.8506 1.6589 37 1 1.4197 7.8588 2.2449 38 1 1.4643 7.4353 0.5128 39 1 -0.6165 6.6975 -0.5097 40 1 -1.8011 5.9142 0.5609 41 1 3.2691 -1.0693 0.0009 42 1 0.7617 -2.2920 -1.2385 43 1 2.0711 -1.4894 -2.1393 44 1 3.6857 -3.1632 -1.3658 45 1 2.2944 -4.0008 -2.0977 46 1 3.4699 -6.4812 2.6279 47 1 3.6841 -3.1630 1.3689 48 1 2.2915 -3.9983 2.1008 49 1 2.0688 -1.4890 2.1403 50 1 0.7603 -2.2917 1.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005699097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:26 Heat of formation + Delta-G solvation = -25.367215 kcal Electronic energy + Delta-G solvation = -30304.423219 eV Core-core repulsion = 26297.213823 eV Total energy + Delta-G solvation = -4007.209396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.91313 -39.80508 -37.88567 -37.15430 -35.22038 -33.49151 -32.76764 -31.85448 -30.21382 -29.85482 -29.54624 -27.04197 -26.54143 -24.92667 -24.24923 -22.97350 -22.19451 -22.10394 -20.94183 -19.32673 -18.93897 -17.31341 -17.22356 -16.85796 -16.41321 -16.19859 -15.94069 -15.42805 -15.02680 -14.81650 -14.56575 -14.28130 -13.98261 -13.74826 -13.59533 -13.51180 -13.33198 -13.08627 -13.00334 -12.69836 -12.64149 -12.54201 -12.38716 -12.01660 -11.74470 -11.49393 -11.40935 -11.11878 -11.03667 -10.84261 -10.72853 -10.36345 -10.24040 -10.18798 -10.09675 -9.82558 -9.72098 -9.49980 -9.10750 -8.88884 -8.56125 -8.32521 -6.68483 -5.80101 -3.24338 0.66161 1.04000 2.69807 3.06469 3.36201 3.40803 3.43080 3.44813 3.51498 4.22592 4.25459 4.40837 4.45928 4.47812 4.68836 4.74938 4.88604 4.91875 5.00285 5.12779 5.16904 5.24166 5.29866 5.35274 5.38849 5.41736 5.46648 5.50269 5.59885 5.62599 5.69427 5.71897 5.85567 5.96336 6.06956 6.08856 6.14691 6.21133 6.32448 6.47699 6.54876 6.56405 6.61351 6.66644 6.76085 6.88634 6.95210 7.32913 7.50794 7.65836 7.77691 8.23741 8.44089 9.19723 9.82446 10.39808 11.28582 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.002108 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.785298 B =13279.045432 C =13388.820540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.600 5.600 3 C 0.554 3.446 4 O -0.537 6.537 5 C -0.117 4.117 6 C -0.095 4.095 7 C -0.119 4.119 8 C -0.106 4.106 9 C -0.081 4.081 10 C -0.064 4.064 11 C -0.116 4.116 12 C 0.059 3.941 13 O -0.376 6.376 14 C 0.101 3.899 15 C 0.145 3.855 16 C -0.137 4.137 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.254 0.746 47 H 0.020 0.980 48 H 0.092 0.908 49 H 0.051 0.949 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 25.230 -2.797 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.331 5.331 3 C 0.341 3.659 4 O -0.415 6.415 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.137 4.137 8 C -0.106 4.106 9 C -0.081 4.081 10 C -0.083 4.083 11 C -0.153 4.153 12 C -0.017 4.017 13 O -0.294 6.294 14 C 0.024 3.976 15 C 0.043 3.957 16 C -0.177 4.177 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.110 0.890 49 H 0.069 0.931 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.304 25.165 -2.558 26.623 hybrid contribution -0.316 -1.110 -0.070 1.156 sum -8.620 24.055 -2.628 25.688 Atomic orbital electron populations 1.22084 0.80237 1.03766 1.01110 1.48068 1.06953 1.06204 1.71914 1.18359 0.87089 0.83573 0.76830 1.90779 1.13641 1.87139 1.49961 1.19955 0.96088 0.94958 1.01047 1.21621 0.93381 0.97916 0.98460 1.20907 1.00495 0.92670 0.99601 1.20423 0.95404 0.96974 0.97809 1.19400 0.94599 0.95413 0.98695 1.21112 0.99207 0.91141 0.96795 1.21155 1.00683 0.93490 1.00006 1.22601 0.80924 0.96287 1.01924 1.87996 1.22164 1.71476 1.47742 1.21494 0.98035 0.87784 0.90270 1.21247 0.97279 0.80659 0.96487 1.22363 1.01374 0.98020 0.95945 1.20870 0.95836 0.90897 0.90363 1.44078 1.77813 1.10214 0.99402 1.19161 1.25457 0.86425 1.07172 0.91702 1.25098 0.96975 0.97725 0.99860 1.70007 1.29070 1.37733 1.17950 0.86290 0.79628 0.83714 0.77072 1.21368 1.21568 1.20507 1.20765 0.95297 0.88578 0.90599 1.22585 1.01663 0.99020 0.95316 0.92555 0.90132 0.91052 0.84352 0.85242 0.84997 0.89396 0.89375 0.88083 0.92539 0.91466 0.87444 0.88632 0.92081 0.92946 0.96200 0.92423 0.93565 0.96152 0.88997 0.93077 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 7.94 59.85 0.47 1.29 16 2 N -0.60 -9.10 2.76 -175.00 -0.48 -9.58 16 3 C 0.55 8.89 7.35 -12.33 -0.09 8.80 16 4 O -0.54 -10.61 16.26 5.32 0.09 -10.53 16 5 C -0.12 -1.50 5.23 -105.03 -0.55 -2.05 16 6 C -0.10 -0.96 7.60 -39.25 -0.30 -1.26 16 7 C -0.12 -1.00 9.65 -39.55 -0.38 -1.38 16 8 C -0.11 -0.95 5.81 -104.46 -0.61 -1.56 16 9 C -0.08 -0.81 5.77 -104.61 -0.60 -1.41 16 10 C -0.06 -0.76 9.25 -39.11 -0.36 -1.12 16 11 C -0.12 -0.89 5.99 -27.87 -0.17 -1.06 16 12 C 0.06 0.40 6.85 37.14 0.25 0.65 16 13 O -0.38 -3.27 10.77 -35.23 -0.38 -3.65 16 14 C 0.10 0.72 6.66 36.01 0.24 0.96 16 15 C 0.14 2.60 2.47 -67.89 -0.17 2.43 16 16 C -0.14 -2.41 5.34 -26.61 -0.14 -2.55 16 17 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 18 N -0.59 -14.75 2.99 -172.32 -0.52 -15.26 16 19 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 20 H 0.07 1.72 7.87 -52.49 -0.41 1.31 16 21 C 0.00 0.05 4.96 -17.43 -0.09 -0.03 16 22 N -0.90 -26.15 11.13 55.49 0.62 -25.53 16 23 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.17 4.16 5.28 -3.71 -0.02 4.14 16 28 C -0.15 -2.80 5.32 -26.61 -0.14 -2.95 16 29 H 0.06 0.54 6.81 -51.93 -0.35 0.18 16 30 H 0.08 0.97 6.47 -51.93 -0.34 0.63 16 31 H 0.07 0.72 5.92 -51.93 -0.31 0.41 16 32 H 0.14 1.20 5.27 -52.48 -0.28 0.92 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 1.58 8.05 -52.49 -0.42 1.16 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 42 H 0.06 1.04 7.72 -51.92 -0.40 0.64 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 49 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -32.78 385.86 -10.43 -43.21 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.73 Total: 0.08 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.82 Total: -1.01 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.38 Total: -50.38 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.29 Total: -14.17 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.78 -10.43 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005699097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.839 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds