Wall clock time and date at job start Wed Apr 1 2020 03:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99690 * 2 1 4 4 O 1.21554 * 119.99698 * 185.06033 * 3 2 1 5 5 C 1.47843 * 120.00303 * 5.05699 * 3 2 1 6 6 C 1.39600 * 120.22437 * 320.73357 * 5 3 2 7 7 C 1.37754 * 119.74293 * 180.02562 * 6 5 3 8 8 C 1.38810 * 120.50934 * 359.97438 * 7 6 5 9 9 C 1.38077 * 119.99904 * 359.84779 * 8 7 6 10 10 C 1.38331 * 120.02451 * 0.23427 * 9 8 7 11 11 C 1.50768 * 121.33675 * 180.53538 * 9 8 7 12 12 C 1.52964 * 109.77498 * 342.91343 * 11 9 8 13 13 O 1.42885 * 108.38826 * 49.22186 * 12 11 9 14 14 C 1.42706 * 113.33514 * 289.18131 * 13 12 11 15 15 C 1.46500 * 119.99916 * 179.97438 * 2 1 3 16 16 C 1.53042 * 109.45771 * 60.07580 * 15 2 1 17 17 C 1.53190 * 109.31146 * 178.61630 * 16 15 2 18 18 N 1.46922 * 108.78137 * 54.62915 * 17 16 15 19 19 C 1.36930 * 120.63056 * 126.41390 * 18 17 16 20 20 H 1.08000 * 120.00038 * 331.10675 * 19 18 17 21 21 C 1.38815 * 119.99984 * 151.11311 * 19 18 17 22 22 N 1.31621 * 120.00073 * 344.96740 * 21 19 18 23 23 Si 1.86799 * 120.00190 * 164.96421 * 21 19 18 24 24 H 1.48506 * 109.46956 * 89.99741 * 23 21 19 25 25 H 1.48495 * 109.47277 * 209.99823 * 23 21 19 26 26 H 1.48501 * 109.47371 * 330.00168 * 23 21 19 27 27 C 1.46933 * 118.73701 * 306.39454 * 18 17 16 28 28 C 1.53035 * 109.46251 * 300.00333 * 15 2 1 29 29 H 1.08997 * 109.46768 * 84.17188 * 1 2 3 30 30 H 1.09003 * 109.47112 * 204.17063 * 1 2 3 31 31 H 1.09007 * 109.47245 * 324.17419 * 1 2 3 32 32 H 1.08003 * 120.13161 * 0.09113 * 6 5 3 33 33 H 1.07995 * 119.74261 * 179.97438 * 7 6 5 34 34 H 1.07995 * 119.91421 * 179.83920 * 10 9 8 35 35 H 1.09005 * 109.42618 * 103.00427 * 11 9 8 36 36 H 1.08998 * 109.42357 * 222.88866 * 11 9 8 37 37 H 1.08997 * 109.64232 * 168.94370 * 12 11 9 38 38 H 1.08998 * 109.63961 * 289.56989 * 12 11 9 39 39 H 1.09001 * 109.33750 * 291.73060 * 14 13 12 40 40 H 1.09002 * 109.33930 * 172.05980 * 14 13 12 41 41 H 1.08995 * 109.45759 * 180.02562 * 15 2 1 42 42 H 1.09008 * 109.49382 * 298.55915 * 16 15 2 43 43 H 1.08997 * 109.49948 * 58.65628 * 16 15 2 44 44 H 1.09004 * 109.58249 * 294.84127 * 17 16 15 45 45 H 1.09000 * 109.70573 * 174.48855 * 17 16 15 46 46 H 0.96994 * 119.99929 * 180.02562 * 22 21 19 47 47 H 1.08991 * 109.58825 * 293.81904 * 27 18 17 48 48 H 1.09005 * 109.70042 * 173.46102 * 27 18 17 49 49 H 1.08999 * 109.49747 * 301.33930 * 28 15 2 50 50 H 1.09002 * 109.49899 * 61.43280 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3508 1.1693 -0.0929 5 6 1.4040 2.4451 0.1129 6 6 0.1892 2.6183 -0.5528 7 6 -0.4870 3.8133 -0.4412 8 6 0.0300 4.8463 0.3285 9 6 1.2293 4.6793 0.9921 10 6 1.9184 3.4845 0.8863 11 6 1.8125 5.7767 1.8457 12 6 1.1447 7.1095 1.5027 13 8 -0.2714 6.9196 1.5118 14 6 -0.7438 6.1366 0.4162 15 6 2.1975 -1.2687 0.0006 16 6 1.8290 -2.0707 -1.2497 17 6 2.6225 -3.3810 -1.2633 18 7 2.3850 -4.0910 0.0009 19 6 1.9520 -5.3900 0.0007 20 1 1.3531 -5.7595 -0.8186 21 6 2.2827 -6.2320 1.0536 22 7 3.2386 -5.8927 1.8924 23 14 1.3712 -7.8467 1.2802 24 1 2.0707 -8.9197 0.5287 25 1 1.3343 -8.1961 2.7230 26 1 -0.0161 -7.7080 0.7689 27 6 2.6212 -3.3807 1.2652 28 6 1.8276 -2.0705 1.2505 29 1 -0.3633 0.1044 -1.0223 30 1 -0.3633 -0.9376 0.4208 31 1 -0.3634 0.8333 0.6015 32 1 -0.2195 1.8182 -1.1522 33 1 -1.4265 3.9474 -0.9565 34 1 2.8575 3.3568 1.4040 35 1 1.6430 5.5466 2.8976 36 1 2.8838 5.8506 1.6589 37 1 1.4197 7.8588 2.2449 38 1 1.4643 7.4353 0.5128 39 1 -0.6165 6.6975 -0.5097 40 1 -1.8011 5.9142 0.5609 41 1 3.2691 -1.0693 0.0009 42 1 0.7617 -2.2920 -1.2385 43 1 2.0711 -1.4894 -2.1393 44 1 3.6857 -3.1632 -1.3658 45 1 2.2944 -4.0008 -2.0977 46 1 3.4699 -6.4812 2.6279 47 1 3.6841 -3.1630 1.3689 48 1 2.2915 -3.9983 2.1008 49 1 2.0688 -1.4890 2.1403 50 1 0.7603 -2.2917 1.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005699097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:24 Heat of formation + Delta-G solvation = -44.584082 kcal Electronic energy + Delta-G solvation = -30305.256525 eV Core-core repulsion = 26297.213823 eV Total energy + Delta-G solvation = -4008.042701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83214 -40.78925 -39.16408 -38.22090 -36.69467 -34.55253 -33.97474 -32.98639 -31.84853 -31.30955 -30.49848 -28.10257 -27.62466 -26.47541 -24.88115 -24.18259 -23.89943 -23.18387 -22.02030 -20.63158 -20.28118 -18.77383 -18.19085 -17.96952 -17.43996 -17.21076 -16.84838 -16.55713 -16.36212 -15.89606 -15.66430 -15.41177 -15.34269 -15.00856 -14.84889 -14.67482 -14.37422 -14.34792 -14.16023 -13.96538 -13.88926 -13.51156 -13.30857 -13.22657 -13.01937 -12.79276 -12.64417 -12.53026 -12.47198 -12.11433 -12.05291 -12.01431 -11.92360 -11.65264 -11.51695 -11.39084 -11.04257 -10.62729 -10.58749 -9.89140 -9.68240 -9.59827 -8.72322 -7.88635 -5.36658 -0.16777 0.29880 1.47688 1.48649 1.58569 1.59079 1.89977 2.50740 2.63859 2.93596 3.27877 3.36560 3.60805 3.62506 3.68490 3.82315 3.84959 3.99665 4.01867 4.13933 4.23195 4.27278 4.28987 4.41827 4.42268 4.44878 4.53951 4.61587 4.62274 4.66268 4.72842 4.79422 4.81221 4.84856 4.89173 4.93993 4.99016 5.02300 5.07163 5.10202 5.23210 5.26832 5.29802 5.42384 5.45607 5.53478 5.62200 5.67001 5.84727 6.14916 6.32696 6.37635 7.01807 7.12137 7.81493 8.35373 9.18626 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.002108 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.785298 B =13279.045432 C =13388.820540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.598 5.598 3 C 0.550 3.450 4 O -0.588 6.588 5 C -0.139 4.139 6 C -0.093 4.093 7 C -0.109 4.109 8 C -0.104 4.104 9 C -0.090 4.090 10 C -0.082 4.082 11 C -0.118 4.118 12 C 0.059 3.941 13 O -0.393 6.393 14 C 0.097 3.903 15 C 0.154 3.846 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.608 5.608 19 C -0.261 4.261 20 H 0.073 0.927 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.182 3.818 28 C -0.128 4.128 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.005 0.995 45 H 0.066 0.934 46 H 0.250 0.750 47 H -0.012 1.012 48 H 0.062 0.938 49 H 0.054 0.946 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.505 27.153 -4.215 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.328 5.328 3 C 0.340 3.660 4 O -0.470 6.470 5 C -0.142 4.142 6 C -0.111 4.111 7 C -0.127 4.127 8 C -0.105 4.105 9 C -0.090 4.090 10 C -0.101 4.101 11 C -0.155 4.155 12 C -0.017 4.017 13 O -0.312 6.312 14 C 0.021 3.979 15 C 0.051 3.949 16 C -0.159 4.159 17 C 0.017 3.983 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.799 3.201 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.190 1.190 27 C 0.055 3.945 28 C -0.167 4.167 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.023 0.977 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.006 0.994 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.968 27.113 -4.001 29.906 hybrid contribution 0.838 -1.621 0.347 1.858 sum -11.130 25.492 -3.654 28.055 Atomic orbital electron populations 1.22381 0.77439 1.04430 1.03342 1.48000 1.08516 1.04780 1.71456 1.18939 0.86680 0.84758 0.75622 1.90744 1.16001 1.87915 1.52313 1.19762 0.97577 0.93445 1.03441 1.21799 0.92137 0.99241 0.97897 1.21303 1.01334 0.91393 0.98681 1.20820 0.94785 0.98129 0.96718 1.19646 0.95129 0.95089 0.99171 1.21109 0.99225 0.92185 0.97543 1.21216 1.01184 0.93596 0.99496 1.22722 0.80114 0.95860 1.03022 1.87978 1.22996 1.71652 1.48569 1.21725 0.98629 0.86743 0.90758 1.20844 0.96021 0.82048 0.96016 1.22148 1.01454 0.95957 0.96338 1.21013 0.95725 0.92530 0.89058 1.44325 1.77954 1.10182 1.00694 1.19540 1.25022 0.87330 1.07180 0.90981 1.25914 0.97863 1.01221 0.99873 1.70186 1.30812 1.38983 1.18556 0.85220 0.78891 0.79499 0.76479 1.21275 1.22057 1.19023 1.20508 0.94016 0.90232 0.89705 1.22303 1.01377 0.96674 0.96389 0.89654 0.90365 0.89308 0.82633 0.81484 0.86656 0.89611 0.88805 0.86383 0.91675 0.89572 0.85432 0.91897 0.90486 0.91062 0.97680 0.91548 0.94098 0.99419 0.91926 0.92780 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 7.94 127.77 1.01 2.31 16 2 N -0.60 -17.58 2.76 -825.85 -2.28 -19.86 16 3 C 0.55 17.84 7.35 86.79 0.64 18.47 16 4 O -0.59 -24.46 16.26 -3.89 -0.06 -24.53 16 5 C -0.14 -3.47 5.23 -20.13 -0.11 -3.57 16 6 C -0.09 -1.58 7.60 22.48 0.17 -1.41 16 7 C -0.11 -1.39 9.65 22.29 0.22 -1.18 16 8 C -0.10 -1.55 5.81 -19.76 -0.11 -1.66 16 9 C -0.09 -1.69 5.77 -19.86 -0.11 -1.81 16 10 C -0.08 -1.97 9.25 22.57 0.21 -1.76 16 11 C -0.12 -1.69 5.99 29.86 0.18 -1.51 16 12 C 0.06 0.66 6.85 71.97 0.49 1.16 16 13 O -0.39 -5.73 10.77 -148.98 -1.60 -7.34 16 14 C 0.10 1.02 6.66 71.24 0.47 1.49 16 15 C 0.15 5.56 2.47 45.02 0.11 5.67 16 16 C -0.12 -4.05 5.34 30.67 0.16 -3.88 16 17 C 0.14 6.05 6.52 86.36 0.56 6.61 16 18 N -0.61 -30.86 2.99 -699.10 -2.09 -32.96 16 19 C -0.26 -14.22 9.59 84.04 0.81 -13.42 16 20 H 0.07 3.76 7.87 -2.91 -0.02 3.74 16 21 C -0.05 -3.00 4.96 84.86 0.42 -2.58 16 22 N -0.94 -56.34 11.13 21.65 0.24 -56.10 16 23 Si 0.97 44.56 29.58 68.60 2.03 46.59 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.18 9.09 5.28 86.36 0.46 9.55 16 28 C -0.13 -4.98 5.32 30.67 0.16 -4.82 16 29 H 0.09 1.25 6.81 -2.39 -0.02 1.23 16 30 H 0.08 1.63 6.47 -2.39 -0.02 1.61 16 31 H 0.09 1.50 5.92 -2.38 -0.01 1.48 16 32 H 0.16 2.04 5.27 -2.91 -0.02 2.02 16 33 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.12 3.02 8.05 -2.91 -0.02 3.00 16 35 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.62 8.07 -2.39 -0.02 0.60 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 2.72 6.91 -2.39 -0.02 2.70 16 42 H 0.08 2.41 7.72 -2.38 -0.02 2.39 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 45 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 46 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 47 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 48 H 0.06 3.49 6.06 -2.38 -0.01 3.47 16 49 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.07 2.63 6.72 -2.39 -0.02 2.61 16 Total: -1.00 -74.87 385.86 2.91 -71.96 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.94 Total: 14.56 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.74 Total: 7.67 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.13 Total: -108.92 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.67 Total: -31.86 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -74.87 2.91 -71.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005699097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.373 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds