Wall clock time and date at job start Wed Apr 1 2020 03:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34786 * 119.99760 * 2 1 4 4 O 1.21276 * 119.99703 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.99779 * 359.97438 * 3 2 1 6 6 C 1.50702 * 109.46908 * 180.02562 * 5 3 2 7 7 C 1.38265 * 119.98262 * 269.72195 * 6 5 3 8 8 C 1.38291 * 120.04193 * 179.78347 * 7 6 5 9 9 C 1.37965 * 119.92098 * 0.47536 * 8 7 6 10 10 C 1.38604 * 120.03703 * 359.78152 * 9 8 7 11 11 C 1.37966 * 120.04079 * 359.97438 * 10 9 8 12 12 C 1.51087 * 107.27174 * 179.97438 * 10 9 8 13 13 O 1.43941 * 105.95276 * 17.68589 * 12 10 9 14 14 C 1.43941 * 104.95342 * 331.55680 * 13 12 10 15 15 C 1.46492 * 120.00277 * 179.97438 * 2 1 3 16 16 C 1.53045 * 109.46131 * 60.00232 * 15 2 1 17 17 C 1.53190 * 109.31412 * 178.61543 * 16 15 2 18 18 N 1.46924 * 108.89302 * 54.56599 * 17 16 15 19 19 C 1.36939 * 120.63060 * 126.46770 * 18 17 16 20 20 H 1.07997 * 119.99691 * 332.72781 * 19 18 17 21 21 C 1.38808 * 119.99990 * 152.73100 * 19 18 17 22 22 N 1.31611 * 120.00187 * 159.40601 * 21 19 18 23 23 Si 1.86807 * 120.00080 * 339.40635 * 21 19 18 24 24 H 1.48502 * 109.46912 * 92.90377 * 23 21 19 25 25 H 1.48493 * 109.47014 * 212.90653 * 23 21 19 26 26 H 1.48501 * 109.46860 * 332.90463 * 23 21 19 27 27 C 1.46967 * 118.71435 * 306.63798 * 18 17 16 28 28 C 1.53043 * 109.46146 * 299.93641 * 15 2 1 29 29 H 1.09004 * 109.47584 * 270.00168 * 1 2 3 30 30 H 1.09000 * 109.47312 * 30.00340 * 1 2 3 31 31 H 1.08998 * 109.47199 * 150.00150 * 1 2 3 32 32 H 1.09001 * 109.47204 * 299.99698 * 5 3 2 33 33 H 1.08996 * 109.47630 * 60.00525 * 5 3 2 34 34 H 1.07996 * 119.97223 * 0.02562 * 7 6 5 35 35 H 1.08005 * 120.04029 * 180.25630 * 8 7 6 36 36 H 1.07999 * 120.03935 * 180.02562 * 11 10 9 37 37 H 1.08997 * 110.15326 * 136.80787 * 12 10 9 38 38 H 1.08997 * 110.15374 * 258.56990 * 12 10 9 39 39 H 1.09003 * 110.15341 * 147.57102 * 14 13 12 40 40 H 1.09000 * 110.15244 * 269.25121 * 14 13 12 41 41 H 1.09000 * 109.46202 * 179.97438 * 15 2 1 42 42 H 1.08999 * 109.49467 * 58.66061 * 16 15 2 43 43 H 1.09001 * 109.52263 * 298.58657 * 16 15 2 44 44 H 1.09004 * 109.58495 * 174.42385 * 17 16 15 45 45 H 1.08999 * 109.58469 * 294.70784 * 17 16 15 46 46 H 0.97006 * 120.00623 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.46555 * 293.57797 * 27 18 17 48 48 H 1.08995 * 109.70994 * 173.28941 * 27 18 17 49 49 H 1.08998 * 109.49429 * 301.33701 * 28 15 2 50 50 H 1.08996 * 109.49685 * 61.43262 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3645 3.6178 -0.0011 7 6 2.8091 4.1473 1.1963 8 6 3.7111 5.1955 1.1973 9 6 4.1594 5.7188 0.0020 10 6 3.7097 5.1915 -1.1983 11 6 2.8137 4.1424 -1.1993 12 6 4.3759 5.9707 -2.3082 13 8 5.4988 6.6384 -1.7040 14 6 5.1166 6.8392 -0.3308 15 6 2.1975 -1.2686 0.0006 16 6 1.8277 -2.0715 -1.2488 17 6 2.6214 -3.3817 -1.2624 18 7 2.3882 -4.0923 0.0023 19 6 1.9573 -5.3922 0.0030 20 1 1.3791 -5.7699 -0.8273 21 6 2.2637 -6.2243 1.0709 22 7 1.5475 -7.3069 1.2883 23 14 3.6927 -5.8076 2.1997 24 1 3.1961 -5.0206 3.3569 25 1 4.3207 -7.0619 2.6869 26 1 4.6972 -5.0090 1.4524 27 6 2.6226 -3.3799 1.2662 28 6 1.8289 -2.0697 1.2514 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 0.7590 2.5298 -0.8908 33 1 0.7583 2.5303 0.8891 34 1 2.4546 3.7394 2.1313 35 1 4.0616 5.6064 2.1326 36 1 2.4636 3.7313 -2.1346 37 1 4.7182 5.2927 -3.0899 38 1 3.6821 6.7025 -2.7221 39 1 5.9937 6.7882 0.3144 40 1 4.6220 7.8038 -0.2159 41 1 3.2691 -1.0692 0.0000 42 1 2.0689 -1.4907 -2.1390 43 1 0.7604 -2.2927 -1.2369 44 1 2.2900 -4.0010 -2.0960 45 1 3.6841 -3.1641 -1.3686 46 1 1.7618 -7.8886 2.0344 47 1 3.6856 -3.1620 1.3685 48 1 2.2938 -3.9969 2.1024 49 1 2.0710 -1.4877 2.1406 50 1 0.7616 -2.2910 1.2403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006344356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:48 Heat of formation + Delta-G solvation = -15.796108 kcal Electronic energy + Delta-G solvation = -30096.237986 eV Core-core repulsion = 26089.443625 eV Total energy + Delta-G solvation = -4006.794361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.04017 -40.09601 -38.14291 -37.36270 -35.28351 -33.25904 -32.38375 -31.79573 -30.61215 -30.40864 -29.06768 -27.53388 -26.98421 -25.15382 -24.31571 -22.88083 -22.14806 -22.03717 -21.12318 -19.56743 -18.94597 -17.19263 -17.00734 -16.85800 -16.71086 -16.36363 -16.14342 -15.65374 -15.30774 -14.87699 -14.57570 -14.23618 -14.12440 -13.80438 -13.63769 -13.47448 -13.24785 -13.09732 -13.02275 -12.98975 -12.86488 -12.46424 -12.34929 -12.18722 -12.07419 -11.93751 -11.81529 -11.63524 -11.16522 -10.92963 -10.84766 -10.56202 -10.40011 -10.22020 -10.12737 -9.87361 -9.69527 -9.48697 -9.11662 -8.73766 -8.65822 -8.49385 -7.01543 -5.97062 -3.33087 0.90192 1.06544 2.61740 2.95843 3.31236 3.41580 3.48658 3.52546 3.58342 3.85563 4.28586 4.40947 4.51698 4.55082 4.62121 4.82561 4.92228 4.96930 5.01884 5.03381 5.04059 5.13627 5.18247 5.19471 5.20013 5.23402 5.34498 5.37396 5.48176 5.58483 5.61967 5.68208 5.75450 5.78607 5.98398 6.00371 6.01630 6.03562 6.16560 6.23792 6.29902 6.37072 6.37144 6.57545 6.59686 6.62097 6.64189 6.71764 6.87595 7.44123 7.93394 8.19358 8.30289 8.91256 9.69819 10.07403 11.18747 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.002191 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.198391 B =12773.851465 C =12984.177634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.609 5.609 3 C 0.511 3.489 4 O -0.534 6.534 5 C -0.101 4.101 6 C -0.056 4.056 7 C -0.099 4.099 8 C -0.091 4.091 9 C -0.136 4.136 10 C -0.132 4.132 11 C -0.078 4.078 12 C 0.092 3.908 13 O -0.362 6.362 14 C 0.092 3.908 15 C 0.145 3.855 16 C -0.140 4.140 17 C 0.151 3.849 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.086 0.914 21 C 0.024 3.976 22 N -0.908 5.908 23 Si 0.881 3.119 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.270 1.270 27 C 0.128 3.872 28 C -0.138 4.138 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.263 0.737 47 H 0.027 0.973 48 H 0.076 0.924 49 H 0.055 0.945 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 28.551 -3.138 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C 0.299 3.701 4 O -0.410 6.410 5 C -0.141 4.141 6 C -0.056 4.056 7 C -0.117 4.117 8 C -0.109 4.109 9 C -0.137 4.137 10 C -0.132 4.132 11 C -0.096 4.096 12 C 0.016 3.984 13 O -0.281 6.281 14 C 0.016 3.984 15 C 0.043 3.957 16 C -0.180 4.180 17 C 0.024 3.976 18 N -0.330 5.330 19 C -0.388 4.388 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.551 5.551 23 Si 0.711 3.289 24 H -0.216 1.216 25 H -0.231 1.231 26 H -0.195 1.195 27 C 0.002 3.998 28 C -0.178 4.178 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.094 0.906 49 H 0.073 0.927 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.423 28.433 -3.173 28.644 hybrid contribution 0.370 -0.058 0.941 1.013 sum -1.053 28.375 -2.233 28.482 Atomic orbital electron populations 1.21807 0.79878 1.03276 1.01992 1.48119 1.07000 1.06168 1.72937 1.20450 0.88105 0.84971 0.76589 1.90727 1.13816 1.87152 1.49350 1.20725 0.97493 0.90628 1.05250 1.19270 0.97673 0.95550 0.93127 1.20968 0.97079 0.95974 0.97680 1.20313 0.97409 0.96551 0.96613 1.21007 0.99879 0.98468 0.94312 1.20944 0.98891 0.97553 0.95832 1.20170 0.96737 0.94807 0.97866 1.21740 0.87911 0.94574 0.94213 1.89084 1.38079 1.78942 1.21953 1.21730 0.97407 0.95486 0.83814 1.21136 0.97447 0.81210 0.95949 1.22367 1.01689 0.97769 0.96133 1.20880 0.96075 0.91036 0.89583 1.44396 1.78566 1.10673 0.99345 1.18907 1.27522 0.84877 1.07464 0.89641 1.25271 0.98396 0.95620 0.98255 1.69829 1.38788 1.15789 1.30680 0.86982 0.84998 0.76260 0.80613 1.21649 1.23100 1.19468 1.21324 0.96412 0.91626 0.90424 1.22361 1.01873 0.97452 0.96140 0.92495 0.91401 0.90251 0.87879 0.87819 0.85524 0.85658 0.85837 0.88444 0.90546 0.88560 0.90605 0.88632 0.92493 0.91577 0.91493 0.95745 0.92758 0.95553 0.90637 0.92669 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 9.33 59.85 0.56 1.24 16 2 N -0.61 -7.90 2.76 -173.89 -0.48 -8.38 16 3 C 0.51 6.83 7.67 -10.98 -0.08 6.74 16 4 O -0.53 -9.48 15.36 5.56 0.09 -9.39 16 5 C -0.10 -0.90 4.38 -29.04 -0.13 -1.03 16 6 C -0.06 -0.58 4.38 -104.59 -0.46 -1.04 16 7 C -0.10 -0.99 9.70 -39.55 -0.38 -1.38 16 8 C -0.09 -0.86 10.04 -39.66 -0.40 -1.26 16 9 C -0.14 -1.37 6.32 -104.40 -0.66 -2.03 16 10 C -0.13 -1.37 6.32 -104.40 -0.66 -2.03 16 11 C -0.08 -0.80 9.70 -39.66 -0.38 -1.19 16 12 C 0.09 0.81 7.63 36.19 0.28 1.09 16 13 O -0.36 -3.83 11.72 -35.23 -0.41 -4.24 16 14 C 0.09 0.78 7.63 36.19 0.28 1.06 16 15 C 0.14 2.34 2.48 -67.89 -0.17 2.18 16 16 C -0.14 -2.24 5.31 -26.61 -0.14 -2.38 16 17 C 0.15 2.95 6.51 -3.71 -0.02 2.92 16 18 N -0.61 -14.24 2.78 -172.29 -0.48 -14.72 16 19 C -0.26 -7.16 10.04 -15.06 -0.15 -7.31 16 20 H 0.09 2.50 8.05 -52.49 -0.42 2.08 16 21 C 0.02 0.68 5.23 -17.44 -0.09 0.58 16 22 N -0.91 -27.61 13.97 55.49 0.78 -26.84 16 23 Si 0.88 22.49 24.35 -169.99 -4.14 18.35 16 24 H -0.29 -7.10 6.62 56.52 0.37 -6.72 16 25 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 26 H -0.27 -6.84 6.63 56.52 0.37 -6.47 16 27 C 0.13 2.81 4.20 -3.69 -0.02 2.79 16 28 C -0.14 -2.43 5.34 -26.61 -0.14 -2.57 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.43 6.44 -51.93 -0.33 0.10 16 31 H 0.08 0.79 6.46 -51.93 -0.34 0.45 16 32 H 0.10 0.68 7.34 -51.93 -0.38 0.30 16 33 H 0.10 0.70 8.05 -51.93 -0.42 0.29 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 1.78 6.90 -51.93 -0.36 1.42 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.04 6.72 -51.93 -0.35 0.69 16 44 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 48 H 0.08 1.80 4.50 -51.93 -0.23 1.56 16 49 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.07 1.18 7.72 -51.93 -0.40 0.78 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -34.58 388.33 -9.43 -44.01 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.85 Total: -1.03 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.78 Total: -3.61 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.18 Total: -49.94 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.33 Total: -13.63 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.58 -9.43 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006344356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.215 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds