Wall clock time and date at job start Wed Apr 1 2020 03:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34786 * 119.99760 * 2 1 4 4 O 1.21276 * 119.99703 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.99779 * 359.97438 * 3 2 1 6 6 C 1.50702 * 109.46908 * 180.02562 * 5 3 2 7 7 C 1.38265 * 119.98262 * 269.72195 * 6 5 3 8 8 C 1.38291 * 120.04193 * 179.78347 * 7 6 5 9 9 C 1.37965 * 119.92098 * 0.47536 * 8 7 6 10 10 C 1.38604 * 120.03703 * 359.78152 * 9 8 7 11 11 C 1.37966 * 120.04079 * 359.97438 * 10 9 8 12 12 C 1.51087 * 107.27174 * 179.97438 * 10 9 8 13 13 O 1.43941 * 105.95276 * 17.68589 * 12 10 9 14 14 C 1.43941 * 104.95342 * 331.55680 * 13 12 10 15 15 C 1.46492 * 120.00277 * 179.97438 * 2 1 3 16 16 C 1.53045 * 109.46131 * 60.00232 * 15 2 1 17 17 C 1.53190 * 109.31412 * 178.61543 * 16 15 2 18 18 N 1.46924 * 108.89302 * 54.56599 * 17 16 15 19 19 C 1.36939 * 120.63060 * 126.46770 * 18 17 16 20 20 H 1.07997 * 119.99691 * 332.72781 * 19 18 17 21 21 C 1.38808 * 119.99990 * 152.73100 * 19 18 17 22 22 N 1.31611 * 120.00187 * 159.40601 * 21 19 18 23 23 Si 1.86807 * 120.00080 * 339.40635 * 21 19 18 24 24 H 1.48502 * 109.46912 * 92.90377 * 23 21 19 25 25 H 1.48493 * 109.47014 * 212.90653 * 23 21 19 26 26 H 1.48501 * 109.46860 * 332.90463 * 23 21 19 27 27 C 1.46967 * 118.71435 * 306.63798 * 18 17 16 28 28 C 1.53043 * 109.46146 * 299.93641 * 15 2 1 29 29 H 1.09004 * 109.47584 * 270.00168 * 1 2 3 30 30 H 1.09000 * 109.47312 * 30.00340 * 1 2 3 31 31 H 1.08998 * 109.47199 * 150.00150 * 1 2 3 32 32 H 1.09001 * 109.47204 * 299.99698 * 5 3 2 33 33 H 1.08996 * 109.47630 * 60.00525 * 5 3 2 34 34 H 1.07996 * 119.97223 * 0.02562 * 7 6 5 35 35 H 1.08005 * 120.04029 * 180.25630 * 8 7 6 36 36 H 1.07999 * 120.03935 * 180.02562 * 11 10 9 37 37 H 1.08997 * 110.15326 * 136.80787 * 12 10 9 38 38 H 1.08997 * 110.15374 * 258.56990 * 12 10 9 39 39 H 1.09003 * 110.15341 * 147.57102 * 14 13 12 40 40 H 1.09000 * 110.15244 * 269.25121 * 14 13 12 41 41 H 1.09000 * 109.46202 * 179.97438 * 15 2 1 42 42 H 1.08999 * 109.49467 * 58.66061 * 16 15 2 43 43 H 1.09001 * 109.52263 * 298.58657 * 16 15 2 44 44 H 1.09004 * 109.58495 * 174.42385 * 17 16 15 45 45 H 1.08999 * 109.58469 * 294.70784 * 17 16 15 46 46 H 0.97006 * 120.00623 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.46555 * 293.57797 * 27 18 17 48 48 H 1.08995 * 109.70994 * 173.28941 * 27 18 17 49 49 H 1.08998 * 109.49429 * 301.33701 * 28 15 2 50 50 H 1.08996 * 109.49685 * 61.43262 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3645 3.6178 -0.0011 7 6 2.8091 4.1473 1.1963 8 6 3.7111 5.1955 1.1973 9 6 4.1594 5.7188 0.0020 10 6 3.7097 5.1915 -1.1983 11 6 2.8137 4.1424 -1.1993 12 6 4.3759 5.9707 -2.3082 13 8 5.4988 6.6384 -1.7040 14 6 5.1166 6.8392 -0.3308 15 6 2.1975 -1.2686 0.0006 16 6 1.8277 -2.0715 -1.2488 17 6 2.6214 -3.3817 -1.2624 18 7 2.3882 -4.0923 0.0023 19 6 1.9573 -5.3922 0.0030 20 1 1.3791 -5.7699 -0.8273 21 6 2.2637 -6.2243 1.0709 22 7 1.5475 -7.3069 1.2883 23 14 3.6927 -5.8076 2.1997 24 1 3.1961 -5.0206 3.3569 25 1 4.3207 -7.0619 2.6869 26 1 4.6972 -5.0090 1.4524 27 6 2.6226 -3.3799 1.2662 28 6 1.8289 -2.0697 1.2514 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 0.7590 2.5298 -0.8908 33 1 0.7583 2.5303 0.8891 34 1 2.4546 3.7394 2.1313 35 1 4.0616 5.6064 2.1326 36 1 2.4636 3.7313 -2.1346 37 1 4.7182 5.2927 -3.0899 38 1 3.6821 6.7025 -2.7221 39 1 5.9937 6.7882 0.3144 40 1 4.6220 7.8038 -0.2159 41 1 3.2691 -1.0692 0.0000 42 1 2.0689 -1.4907 -2.1390 43 1 0.7604 -2.2927 -1.2369 44 1 2.2900 -4.0010 -2.0960 45 1 3.6841 -3.1641 -1.3686 46 1 1.7618 -7.8886 2.0344 47 1 3.6856 -3.1620 1.3685 48 1 2.2938 -3.9969 2.1024 49 1 2.0710 -1.4877 2.1406 50 1 0.7616 -2.2910 1.2403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006344356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:46 Heat of formation + Delta-G solvation = -37.630576 kcal Electronic energy + Delta-G solvation = -30097.184799 eV Core-core repulsion = 26089.443625 eV Total energy + Delta-G solvation = -4007.741175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.76723 -41.12192 -39.37028 -38.34136 -36.60213 -34.49882 -33.77745 -32.48233 -32.19313 -31.99733 -29.85415 -28.29570 -27.90397 -26.67988 -25.23032 -24.45271 -23.63538 -22.70546 -22.07193 -20.94353 -20.01692 -18.84068 -18.14961 -17.65672 -17.44862 -17.38805 -17.10146 -16.81868 -16.54561 -15.99059 -15.89428 -15.37648 -15.25033 -15.09732 -14.85576 -14.61385 -14.45060 -14.28466 -14.06947 -13.99119 -13.81557 -13.62223 -13.48659 -13.42849 -13.18174 -12.91842 -12.80932 -12.64258 -12.49490 -12.31384 -12.22229 -12.03387 -11.82859 -11.78233 -11.48409 -11.35651 -11.11368 -10.87529 -10.69267 -9.81873 -9.59419 -9.42919 -8.99182 -8.18531 -5.50178 0.18642 0.36349 1.26165 1.39068 1.47304 1.64923 1.99801 2.38594 2.67429 2.93748 3.02874 3.19081 3.30129 3.61826 3.63728 3.74682 3.92475 3.94903 3.98134 4.19263 4.23052 4.28294 4.33262 4.37246 4.40955 4.43031 4.44525 4.50431 4.56953 4.59180 4.62196 4.66554 4.72477 4.74789 4.84623 4.90040 4.93225 5.00302 5.04029 5.04713 5.09064 5.14214 5.29935 5.31822 5.40244 5.53894 5.57449 5.70074 5.84907 5.95195 6.11076 6.47096 6.88121 7.20816 7.59095 8.00472 9.01004 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.002191 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.198391 B =12773.851465 C =12984.177634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.607 5.607 3 C 0.509 3.491 4 O -0.585 6.585 5 C -0.090 4.090 6 C -0.070 4.070 7 C -0.112 4.112 8 C -0.100 4.100 9 C -0.151 4.151 10 C -0.149 4.149 11 C -0.091 4.091 12 C 0.090 3.910 13 O -0.385 6.385 14 C 0.090 3.910 15 C 0.152 3.848 16 C -0.124 4.124 17 C 0.145 3.855 18 N -0.618 5.618 19 C -0.244 4.244 20 H 0.059 0.941 21 C -0.031 4.031 22 N -0.953 5.953 23 Si 0.938 3.062 24 H -0.274 1.274 25 H -0.310 1.310 26 H -0.269 1.269 27 C 0.123 3.877 28 C -0.125 4.125 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.022 0.978 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 31.473 -3.026 31.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.299 3.701 4 O -0.465 6.465 5 C -0.129 4.129 6 C -0.071 4.071 7 C -0.130 4.130 8 C -0.118 4.118 9 C -0.151 4.151 10 C -0.150 4.150 11 C -0.109 4.109 12 C 0.014 3.986 13 O -0.304 6.304 14 C 0.014 3.986 15 C 0.048 3.952 16 C -0.164 4.164 17 C 0.019 3.981 18 N -0.343 5.343 19 C -0.374 4.374 20 H 0.077 0.923 21 C -0.226 4.226 22 N -0.599 5.599 23 Si 0.768 3.232 24 H -0.201 1.201 25 H -0.239 1.239 26 H -0.194 1.194 27 C -0.002 4.002 28 C -0.165 4.165 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.441 31.411 -3.071 31.655 hybrid contribution 0.669 -0.919 0.830 1.407 sum -1.772 30.492 -2.241 30.625 Atomic orbital electron populations 1.22105 0.77228 1.04899 1.03324 1.48082 1.08453 1.04803 1.72547 1.21209 0.87693 0.86123 0.75108 1.90713 1.16276 1.87869 1.51642 1.20763 0.97039 0.87104 1.08000 1.19517 0.98259 0.96079 0.93216 1.21266 0.97235 0.96188 0.98312 1.20617 0.97266 0.96511 0.97385 1.21306 1.00215 0.99021 0.94555 1.21230 0.99216 0.97950 0.96557 1.20423 0.96944 0.94955 0.98580 1.21868 0.87827 0.95004 0.93877 1.89047 1.39131 1.79211 1.23017 1.21889 0.97711 0.95927 0.83069 1.20753 0.96607 0.82735 0.95060 1.22169 1.01295 0.95849 0.97069 1.21054 0.96785 0.92446 0.87797 1.44517 1.78722 1.09708 1.01364 1.18872 1.25850 0.86627 1.06027 0.92304 1.25817 1.00505 0.95930 1.00318 1.69937 1.40547 1.17376 1.32012 0.86044 0.82021 0.75662 0.79478 1.20112 1.23867 1.19422 1.21321 0.96784 0.93202 0.88931 1.22166 1.01231 0.95441 0.97637 0.91313 0.87672 0.90834 0.84885 0.85026 0.84247 0.83742 0.84686 0.88134 0.88594 0.87738 0.88649 0.91142 0.90522 0.90875 0.91657 0.95690 0.92917 0.95975 0.92704 0.91370 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 9.33 127.77 1.19 2.14 16 2 N -0.61 -13.84 2.76 -822.44 -2.27 -16.11 16 3 C 0.51 12.18 7.67 87.65 0.67 12.86 16 4 O -0.58 -20.07 15.36 -3.02 -0.05 -20.12 16 5 C -0.09 -1.26 4.38 29.10 0.13 -1.13 16 6 C -0.07 -1.30 4.38 -19.84 -0.09 -1.38 16 7 C -0.11 -2.03 9.70 22.29 0.22 -1.81 16 8 C -0.10 -1.75 10.04 22.22 0.22 -1.53 16 9 C -0.15 -2.84 6.32 -19.72 -0.12 -2.97 16 10 C -0.15 -2.91 6.32 -19.72 -0.12 -3.04 16 11 C -0.09 -1.72 9.70 22.22 0.22 -1.51 16 12 C 0.09 1.49 7.63 71.36 0.54 2.04 16 13 O -0.38 -7.78 11.72 -148.98 -1.75 -9.53 16 14 C 0.09 1.41 7.63 71.35 0.54 1.96 16 15 C 0.15 4.64 2.48 45.02 0.11 4.75 16 16 C -0.12 -3.73 5.31 30.67 0.16 -3.57 16 17 C 0.14 5.54 6.51 86.36 0.56 6.10 16 18 N -0.62 -28.93 2.78 -699.01 -1.94 -30.87 16 19 C -0.24 -13.67 10.04 84.03 0.84 -12.83 16 20 H 0.06 3.55 8.05 -2.91 -0.02 3.53 16 21 C -0.03 -1.79 5.23 84.86 0.44 -1.34 16 22 N -0.95 -59.33 13.97 21.65 0.30 -59.03 16 23 Si 0.94 47.21 24.35 68.60 1.67 48.88 16 24 H -0.27 -13.01 6.62 99.48 0.66 -12.36 16 25 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 26 H -0.27 -13.34 6.63 99.48 0.66 -12.68 16 27 C 0.12 5.29 4.20 86.35 0.36 5.65 16 28 C -0.12 -4.16 5.34 30.67 0.16 -4.00 16 29 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.10 0.74 6.44 -2.39 -0.02 0.73 16 31 H 0.07 1.18 6.46 -2.39 -0.02 1.17 16 32 H 0.13 1.07 7.34 -2.39 -0.02 1.06 16 33 H 0.13 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 41 H 0.07 2.55 6.90 -2.39 -0.02 2.54 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 2.12 6.72 -2.39 -0.02 2.11 16 44 H 0.06 2.49 7.93 -2.38 -0.02 2.47 16 45 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 47 H 0.02 0.97 7.07 -2.39 -0.02 0.96 16 48 H 0.05 2.57 4.50 -2.39 -0.01 2.56 16 49 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.07 2.37 7.72 -2.39 -0.02 2.35 16 Total: -1.00 -77.24 388.33 2.86 -74.38 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.84 Total: 12.01 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 6.05 Total: 0.39 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -3.91 Total: -106.01 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.79 Total: -29.65 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.67 Total: 48.88 kcal Total: -77.24 2.86 -74.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006344356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.748 kcal (2) G-P(sol) polarization free energy of solvation -77.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds