Wall clock time and date at job start Wed Apr 1 2020 03:44:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.34783 * 119.99744 * 2 1
4 4 O 1.21284 * 119.99508 * 179.97438 * 3 2 1
5 5 C 1.50703 * 120.00273 * 0.02562 * 3 2 1
6 6 C 1.52997 * 109.46828 * 179.97438 * 5 3 2
7 7 H 1.09003 * 110.18641 * 306.72895 * 6 5 3
8 8 O 1.43938 * 110.15842 * 68.46728 * 6 5 3
9 9 C 1.43941 * 104.94627 * 147.56486 * 8 6 5
10 10 C 1.51078 * 105.96062 * 331.55271 * 9 8 6
11 11 C 1.37966 * 132.69052 * 197.69004 * 10 9 8
12 12 C 1.38291 * 119.92100 * 179.76785 * 11 10 9
13 13 C 1.38263 * 120.03861 * 0.51342 * 12 11 10
14 14 C 1.38300 * 120.04352 * 359.46579 * 13 12 11
15 15 C 1.37969 * 119.91599 * 0.27645 * 14 13 12
16 16 C 1.46494 * 120.00127 * 180.02562 * 2 1 3
17 17 C 1.53037 * 109.46045 * 60.06108 * 16 2 1
18 18 C 1.53195 * 109.31033 * 178.61843 * 17 16 2
19 19 N 1.46920 * 108.78015 * 54.63922 * 18 17 16
20 20 C 1.36937 * 120.63688 * 126.41194 * 19 18 17
21 21 H 1.08000 * 120.00258 * 207.66525 * 20 19 18
22 22 C 1.38811 * 119.99590 * 27.65982 * 20 19 18
23 23 N 1.31622 * 119.99953 * 17.37400 * 22 20 19
24 24 Si 1.86799 * 120.00070 * 197.36955 * 22 20 19
25 25 H 1.48494 * 109.46955 * 90.00181 * 24 22 20
26 26 H 1.48502 * 109.47319 * 210.00763 * 24 22 20
27 27 H 1.48500 * 109.46990 * 330.00436 * 24 22 20
28 28 C 1.46926 * 118.73678 * 306.39288 * 19 18 17
29 29 C 1.53047 * 109.45746 * 299.99844 * 16 2 1
30 30 H 1.08995 * 109.47221 * 89.99488 * 1 2 3
31 31 H 1.08997 * 109.47216 * 209.99543 * 1 2 3
32 32 H 1.09002 * 109.47200 * 329.99768 * 1 2 3
33 33 H 1.08997 * 109.47082 * 59.99477 * 5 3 2
34 34 H 1.09001 * 109.46550 * 299.99420 * 5 3 2
35 35 H 1.09001 * 110.15557 * 212.42945 * 9 8 6
36 36 H 1.09000 * 110.15466 * 90.68110 * 9 8 6
37 37 H 1.08004 * 120.03936 * 359.97438 * 11 10 9
38 38 H 1.07995 * 119.98448 * 180.25416 * 12 11 10
39 39 H 1.08005 * 119.97965 * 179.74033 * 13 12 11
40 40 H 1.08002 * 120.04266 * 180.25724 * 14 13 12
41 41 H 1.08996 * 109.46253 * 180.02562 * 16 2 1
42 42 H 1.09000 * 109.49938 * 298.56652 * 17 16 2
43 43 H 1.09000 * 109.49503 * 58.67184 * 17 16 2
44 44 H 1.09003 * 109.58798 * 294.84995 * 18 17 16
45 45 H 1.09004 * 109.58733 * 174.42681 * 18 17 16
46 46 H 0.96999 * 119.99589 * 179.97438 * 23 22 20
47 47 H 1.09004 * 109.58806 * 293.82146 * 28 19 18
48 48 H 1.08993 * 109.59101 * 173.39540 * 28 19 18
49 49 H 1.09004 * 109.49453 * 301.33494 * 29 16 2
50 50 H 1.08996 * 109.49904 * 61.39738 * 29 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1673 0.0000
4 8 3.3517 1.1672 0.0005
5 6 1.3854 2.4724 0.0006
6 6 2.3797 3.6353 0.0011
7 1 3.0891 3.5232 0.8210
8 8 3.0790 3.6905 -1.2558
9 6 3.3352 5.0896 -1.4768
10 6 2.2240 5.8319 -0.7720
11 6 1.7486 7.1229 -0.8759
12 6 0.6895 7.5335 -0.0873
13 6 0.1146 6.6545 0.8119
14 6 0.5908 5.3603 0.9159
15 6 1.6440 4.9490 0.1253
16 6 2.1975 -1.2687 -0.0006
17 6 1.8288 -2.0697 -1.2513
18 6 2.6224 -3.3800 -1.2659
19 7 2.3849 -4.0910 -0.0024
20 6 1.9519 -5.3901 -0.0034
21 1 1.3686 -5.7656 0.8244
22 6 2.2626 -6.2243 -1.0685
23 7 3.2335 -5.9010 -1.8962
24 14 1.3028 -7.8059 -1.3270
25 1 0.1327 -7.5375 -2.2011
26 1 2.1794 -8.8175 -1.9699
27 1 0.8332 -8.3199 -0.0153
28 6 2.6212 -3.3818 1.2625
29 6 1.8276 -2.0715 1.2488
30 1 -0.3633 0.0001 -1.0276
31 1 -0.3633 -0.8900 0.5137
32 1 -0.3634 0.8900 0.5139
33 1 0.7590 2.5299 0.8908
34 1 0.7585 2.5303 -0.8892
35 1 3.3166 5.3108 -2.5440
36 1 4.3002 5.3664 -1.0522
37 1 2.2009 7.8110 -1.5748
38 1 0.3138 8.5426 -0.1707
39 1 -0.7099 6.9775 1.4304
40 1 0.1390 4.6725 1.6154
41 1 3.2691 -1.0693 0.0000
42 1 0.7616 -2.2910 -1.2402
43 1 2.0710 -1.4877 -2.1406
44 1 3.6856 -3.1622 -1.3684
45 1 2.2919 -3.9981 -2.1007
46 1 3.4508 -6.4841 -2.6402
47 1 3.6842 -3.1640 1.3663
48 1 2.2899 -4.0009 2.0961
49 1 2.0689 -1.4907 2.1391
50 1 0.7603 -2.2921 1.2367
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001006353525.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:44:56
Heat of formation + Delta-G solvation = -18.698066 kcal
Electronic energy + Delta-G solvation = -30240.389884 eV
Core-core repulsion = 26233.469685 eV
Total energy + Delta-G solvation = -4006.920199 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.15286 -39.74791 -37.74024 -37.20769 -35.02679 -33.11051 -32.31721 -31.58874
-30.62699 -29.99328 -29.42709 -26.82288 -26.56751 -25.08122 -24.30922 -22.22241
-22.14122 -21.87456 -21.05819 -19.23250 -18.73766 -17.46206 -16.89379 -16.76378
-16.38312 -16.20932 -15.91898 -15.40337 -15.28639 -14.76286 -14.57396 -14.02024
-13.87229 -13.62486 -13.52578 -13.26012 -13.13221 -13.05803 -12.91349 -12.64563
-12.52283 -12.40217 -12.30861 -12.01681 -11.90163 -11.57351 -11.44226 -11.23555
-11.08395 -10.76253 -10.72909 -10.32431 -10.21947 -10.16714 -10.05155 -9.72841
-9.62864 -9.42928 -9.26929 -8.90795 -8.50359 -8.23615 -6.67197 -5.76975
-3.19402 0.84370 0.93559 2.83441 3.16409 3.31638 3.38958 3.45446
3.46924 3.64757 3.85429 4.26588 4.49916 4.50789 4.61031 4.66659
4.74842 4.97684 5.04398 5.08490 5.09728 5.19712 5.21111 5.35772
5.40265 5.44245 5.47102 5.49405 5.55009 5.62259 5.65193 5.72862
5.76480 5.91892 5.96348 6.03022 6.05730 6.11772 6.28848 6.37692
6.47970 6.52587 6.59416 6.63716 6.66792 6.80399 6.95398 7.00306
7.38362 7.61838 7.71064 7.81164 8.41016 8.46556 9.22599 9.86083
10.43091 11.31631
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.028728 B = 0.002064 C = 0.002015
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 974.415113 B =13562.367356 C =13891.275143
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.610 5.610
3 C 0.512 3.488
4 O -0.532 6.532
5 C -0.136 4.136
6 C 0.138 3.862
7 H 0.093 0.907
8 O -0.338 6.338
9 C 0.086 3.914
10 C -0.128 4.128
11 C -0.096 4.096
12 C -0.116 4.116
13 C -0.117 4.117
14 C -0.092 4.092
15 C -0.125 4.125
16 C 0.145 3.855
17 C -0.144 4.144
18 C 0.173 3.827
19 N -0.592 5.592
20 C -0.252 4.252
21 H 0.066 0.934
22 C 0.001 3.999
23 N -0.902 5.902
24 Si 0.903 3.097
25 H -0.288 1.288
26 H -0.291 1.291
27 H -0.279 1.279
28 C 0.148 3.852
29 C -0.138 4.138
30 H 0.054 0.946
31 H 0.076 0.924
32 H 0.064 0.936
33 H 0.104 0.896
34 H 0.101 0.899
35 H 0.097 0.903
36 H 0.078 0.922
37 H 0.125 0.875
38 H 0.127 0.873
39 H 0.128 0.872
40 H 0.126 0.874
41 H 0.095 0.905
42 H 0.056 0.944
43 H 0.050 0.950
44 H 0.020 0.980
45 H 0.090 0.910
46 H 0.254 0.746
47 H 0.020 0.980
48 H 0.056 0.944
49 H 0.051 0.949
50 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.955 27.278 4.321 28.741
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.343 5.343
3 C 0.299 3.701
4 O -0.409 6.409
5 C -0.175 4.175
6 C 0.080 3.920
7 H 0.111 0.889
8 O -0.256 6.256
9 C 0.010 3.990
10 C -0.128 4.128
11 C -0.114 4.114
12 C -0.134 4.134
13 C -0.135 4.135
14 C -0.110 4.110
15 C -0.125 4.125
16 C 0.044 3.956
17 C -0.184 4.184
18 C 0.047 3.953
19 N -0.315 5.315
20 C -0.382 4.382
21 H 0.084 0.916
22 C -0.198 4.198
23 N -0.546 5.546
24 Si 0.733 3.267
25 H -0.215 1.215
26 H -0.218 1.218
27 H -0.205 1.205
28 C 0.021 3.979
29 C -0.178 4.178
30 H 0.073 0.927
31 H 0.095 0.905
32 H 0.083 0.917
33 H 0.122 0.878
34 H 0.119 0.881
35 H 0.115 0.885
36 H 0.096 0.904
37 H 0.143 0.857
38 H 0.145 0.855
39 H 0.146 0.854
40 H 0.144 0.856
41 H 0.113 0.887
42 H 0.075 0.925
43 H 0.069 0.931
44 H 0.038 0.962
45 H 0.108 0.892
46 H 0.064 0.936
47 H 0.038 0.962
48 H 0.075 0.925
49 H 0.070 0.930
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -7.173 26.957 4.044 28.186
hybrid contribution -0.736 -0.562 -0.127 0.935
sum -7.909 26.394 3.917 27.831
Atomic orbital electron populations
1.21742 0.80300 1.02845 1.01780 1.48148 1.06788 1.06419 1.72983
1.20384 0.88120 0.85093 0.76515 1.90715 1.13724 1.87093 1.49330
1.21843 0.98649 0.92077 1.04978 1.21060 0.92226 0.90017 0.88664
0.88912 1.89270 1.76625 1.21950 1.37788 1.21794 0.95399 0.81071
1.00770 1.21144 0.98077 0.95010 0.98566 1.20418 0.96815 0.94349
0.99786 1.21150 0.96268 0.99868 0.96130 1.21154 1.00173 0.93302
0.98841 1.20450 0.95398 0.96296 0.98843 1.21084 0.97132 0.96656
0.97623 1.21168 0.97334 0.80962 0.96176 1.22538 1.01486 0.98883
0.95521 1.20769 0.95338 0.88726 0.90481 1.44099 1.77798 1.10183
0.99443 1.19185 1.26168 0.86631 1.06197 0.91626 1.25057 0.96981
0.97713 1.00001 1.70041 1.28194 1.38437 1.17925 0.86283 0.79428
0.83061 0.77953 1.21488 1.21789 1.20462 1.20863 0.95840 0.90940
0.90301 1.22370 1.01266 0.98066 0.96069 0.92707 0.90482 0.91736
0.87794 0.88107 0.88529 0.90432 0.85697 0.85499 0.85423 0.85609
0.88729 0.92526 0.93116 0.96161 0.89150 0.93595 0.96215 0.92504
0.93024 0.92122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.85 9.33 59.85 0.56 1.41 16
2 N -0.61 -9.17 2.76 -173.89 -0.48 -9.65 16
3 C 0.51 7.91 7.59 -10.98 -0.08 7.83 16
4 O -0.53 -10.44 14.89 -3.43 -0.05 -10.49 16
5 C -0.14 -1.49 3.91 -27.88 -0.11 -1.60 16
6 C 0.14 1.64 2.84 -27.70 -0.08 1.56 16
7 H 0.09 1.18 7.92 -51.93 -0.41 0.76 16
8 O -0.34 -4.70 10.89 -44.22 -0.48 -5.18 16
9 C 0.09 0.87 7.63 36.19 0.28 1.14 16
10 C -0.13 -1.21 6.32 -104.40 -0.66 -1.87 16
11 C -0.10 -0.73 10.04 -39.66 -0.40 -1.12 16
12 C -0.12 -0.77 10.05 -39.55 -0.40 -1.17 16
13 C -0.12 -0.79 10.05 -39.55 -0.40 -1.18 16
14 C -0.09 -0.72 9.78 -39.66 -0.39 -1.11 16
15 C -0.12 -1.22 5.72 -104.40 -0.60 -1.82 16
16 C 0.15 2.66 2.48 -67.89 -0.17 2.49 16
17 C -0.14 -2.86 5.34 -26.61 -0.14 -3.00 16
18 C 0.17 4.23 5.31 -3.71 -0.02 4.21 16
19 N -0.59 -14.95 2.99 -172.32 -0.52 -15.47 16
20 C -0.25 -6.91 9.59 -15.06 -0.14 -7.06 16
21 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16
22 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16
23 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16
24 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16
25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
28 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16
29 C -0.14 -2.44 5.31 -26.61 -0.14 -2.58 16
30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.08 0.88 6.45 -51.93 -0.34 0.54 16
32 H 0.06 0.52 6.44 -51.93 -0.33 0.18 16
33 H 0.10 0.83 7.08 -51.93 -0.37 0.47 16
34 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16
35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16
36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
37 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16
38 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16
39 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16
40 H 0.13 0.74 7.86 -52.49 -0.41 0.33 16
41 H 0.09 1.99 6.90 -51.93 -0.36 1.63 16
42 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16
43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
45 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16
46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
48 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16
49 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
50 H 0.06 1.04 6.72 -51.93 -0.35 0.69 16
LS Contribution 392.90 15.07 5.92 5.92
Total: -1.00 -33.80 392.90 -10.91 -44.71
By element:
Atomic # 1 Polarization: 8.00 SS G_CDS: -7.89 Total: 0.11 kcal
Atomic # 6 Polarization: 2.19 SS G_CDS: -3.00 Total: -0.82 kcal
Atomic # 7 Polarization: -50.57 SS G_CDS: -0.38 Total: -50.94 kcal
Atomic # 8 Polarization: -15.13 SS G_CDS: -0.53 Total: -15.67 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -33.80 -10.91 -44.71 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001006353525.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.010 kcal
(2) G-P(sol) polarization free energy of solvation -33.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.787 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.911 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.698 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds