Wall clock time and date at job start Wed Apr 1 2020 03:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 119.99642 * 2 1 4 4 N 1.34777 * 120.00366 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99689 * 179.97438 * 4 2 1 6 6 H 1.09000 * 115.57792 * 350.73804 * 5 4 2 7 7 C 1.53052 * 117.50415 * 136.46716 * 5 4 2 8 8 C 1.52727 * 59.94711 * 107.46765 * 7 5 4 9 9 C 1.53216 * 117.82767 * 107.74888 * 8 7 5 10 10 C 1.53267 * 108.61497 * 196.96672 * 9 8 7 11 11 N 1.46813 * 109.44941 * 304.40798 * 10 9 8 12 12 C 1.46901 * 110.99743 * 189.19806 * 11 10 9 13 13 C 1.50705 * 109.47189 * 169.99723 * 12 11 10 14 14 C 1.38301 * 119.93137 * 269.72661 * 13 12 11 15 15 C 1.38093 * 120.06869 * 179.72643 * 14 13 12 16 16 C 1.38879 * 119.93076 * 0.54212 * 15 14 13 17 17 O 1.35747 * 120.07103 * 179.74616 * 16 15 14 18 18 C 1.34833 * 117.00267 * 174.44572 * 17 16 15 19 19 H 1.07997 * 119.99537 * 5.06163 * 18 17 16 20 20 C 1.38652 * 120.00261 * 185.05936 * 18 17 16 21 21 N 1.31555 * 120.00129 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99884 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46970 * 60.00258 * 22 20 18 24 24 H 1.48504 * 109.46947 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47088 * 300.00071 * 22 20 18 26 26 C 1.38884 * 119.85894 * 359.73598 * 16 15 14 27 27 C 1.38097 * 119.93286 * 359.97438 * 26 16 15 28 28 C 1.46811 * 111.56081 * 64.83898 * 11 10 9 29 29 C 1.53217 * 117.83629 * 252.24707 * 8 7 5 30 30 H 1.09002 * 109.47302 * 239.99541 * 1 2 3 31 31 H 1.08996 * 109.47509 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.47083 * 120.00252 * 1 2 3 33 33 H 0.96995 * 119.99825 * 359.97438 * 4 2 1 34 34 H 1.09005 * 117.50235 * 359.97438 * 7 5 4 35 35 H 1.09003 * 117.53250 * 214.93267 * 7 5 4 36 36 H 1.08999 * 109.61508 * 77.23159 * 9 8 7 37 37 H 1.08997 * 109.61204 * 316.69987 * 9 8 7 38 38 H 1.09002 * 109.47261 * 64.39736 * 10 9 8 39 39 H 1.08994 * 109.47360 * 184.41082 * 10 9 8 40 40 H 1.09000 * 109.46940 * 289.99933 * 12 11 10 41 41 H 1.08998 * 109.47324 * 49.99957 * 12 11 10 42 42 H 1.08002 * 119.96200 * 0.02562 * 14 13 12 43 43 H 1.08002 * 120.03598 * 180.27638 * 15 14 13 44 44 H 0.96993 * 119.99948 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.03009 * 180.02562 * 26 16 15 46 46 H 1.08000 * 119.96723 * 180.02562 * 27 26 16 47 47 H 1.09000 * 109.47173 * 55.14828 * 28 11 10 48 48 H 1.08994 * 109.47911 * 175.16590 * 28 11 10 49 49 H 1.09001 * 109.61826 * 43.29539 * 29 8 7 50 50 H 1.09003 * 109.75814 * 282.85538 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1670 0.0000 6 1 4.1163 -0.1967 -0.1591 7 6 4.3532 -2.1505 0.9354 8 6 4.3514 -2.3953 -0.5721 9 6 5.6625 -2.1760 -1.3340 10 6 5.3458 -2.0576 -2.8289 11 7 4.6060 -3.2475 -3.2675 12 6 4.4741 -3.2757 -4.7303 13 6 3.9338 -4.6153 -5.1603 14 6 4.8049 -5.6483 -5.4553 15 6 4.3127 -6.8786 -5.8440 16 6 2.9419 -7.0747 -5.9495 17 8 2.4552 -8.2814 -6.3364 18 6 1.1165 -8.4394 -6.3075 19 1 0.4791 -7.6018 -6.0655 20 6 0.5582 -9.6771 -6.5883 21 7 1.3346 -10.6974 -6.8827 22 14 -1.2966 -9.8957 -6.5489 23 1 -1.9234 -8.9859 -7.5411 24 1 -1.6364 -11.3023 -6.8824 25 1 -1.8043 -9.5729 -5.1912 26 6 2.0700 -6.0336 -5.6582 27 6 2.5682 -4.8074 -5.2641 28 6 3.2918 -3.3352 -2.6190 29 6 3.4792 -3.5340 -1.1110 30 1 -0.3634 -0.5139 0.8899 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6960 -2.0072 0.0013 34 1 3.7284 -2.7972 1.5514 35 1 5.2889 -1.8275 1.3918 36 1 6.3287 -3.0224 -1.1670 37 1 6.1381 -1.2586 -0.9871 38 1 4.7398 -1.1684 -3.0027 39 1 6.2756 -1.9796 -3.3922 40 1 3.7903 -2.4889 -5.0487 41 1 5.4509 -3.1146 -5.1864 42 1 5.8709 -5.4939 -5.3768 43 1 4.9933 -7.6862 -6.0700 44 1 0.9441 -11.5633 -7.0788 45 1 1.0034 -6.1832 -5.7389 46 1 1.8907 -3.9976 -5.0370 47 1 2.7362 -2.4146 -2.7979 48 1 2.7389 -4.1793 -3.0309 49 1 2.5080 -3.5166 -0.6163 50 1 3.9670 -4.4910 -0.9259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016441484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:09 Heat of formation + Delta-G solvation = -12.830743 kcal Electronic energy + Delta-G solvation = -29798.433013 eV Core-core repulsion = 25791.767240 eV Total energy + Delta-G solvation = -4006.665773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.53572 -39.36945 -38.83418 -37.27546 -35.93429 -33.63287 -32.36247 -31.20826 -31.11790 -30.15231 -29.81348 -28.32547 -25.59547 -24.46443 -23.48538 -22.67456 -21.97609 -21.61171 -20.81955 -20.30874 -18.95493 -17.98242 -17.24461 -16.96762 -16.63131 -15.69604 -15.49463 -15.23258 -15.07864 -14.61015 -14.53152 -14.30473 -14.12577 -13.91274 -13.69154 -13.51985 -13.15520 -13.09119 -12.90935 -12.75765 -12.71190 -12.59365 -12.47631 -12.03227 -11.93935 -11.80227 -11.46736 -11.34396 -11.25662 -10.94233 -10.82966 -10.71219 -10.66101 -10.45244 -10.39884 -10.26328 -9.90698 -9.34652 -8.96264 -8.84402 -8.23445 -8.14113 -7.17691 -6.46246 -4.05275 2.21234 2.25916 2.28111 2.78888 3.11080 3.11702 3.15013 3.53857 3.94603 3.99293 4.38561 4.42025 4.46212 4.51350 4.63811 4.69523 4.88771 5.01005 5.04495 5.09017 5.15427 5.25980 5.29646 5.30455 5.37593 5.40863 5.44861 5.47391 5.51977 5.64385 5.65762 5.73003 5.78868 5.80357 5.85613 5.90023 5.97090 6.06789 6.15852 6.19988 6.21187 6.42450 6.70470 6.89615 7.01516 7.14115 7.15568 7.18864 7.28145 7.39983 7.44067 7.82675 7.88578 7.98616 8.99255 9.69977 10.71775 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.002418 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.254291 B =11578.984996 C =12988.187510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.514 3.486 3 O -0.548 6.548 4 N -0.701 5.701 5 C 0.083 3.917 6 H 0.134 0.866 7 C -0.184 4.184 8 C -0.121 4.121 9 C -0.075 4.075 10 C 0.058 3.942 11 N -0.531 5.531 12 C 0.114 3.886 13 C -0.178 4.178 14 C -0.052 4.052 15 C -0.194 4.194 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.040 3.960 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.234 4.234 27 C -0.067 4.067 28 C 0.057 3.943 29 C -0.076 4.076 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.402 0.598 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.027 0.973 48 H 0.089 0.911 49 H 0.059 0.941 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 17.549 13.501 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.301 3.699 3 O -0.425 6.425 4 N -0.352 5.352 5 C -0.023 4.023 6 H 0.151 0.849 7 C -0.222 4.222 8 C -0.123 4.123 9 C -0.113 4.113 10 C -0.070 4.070 11 N -0.256 5.256 12 C -0.012 4.012 13 C -0.179 4.179 14 C -0.071 4.071 15 C -0.213 4.213 16 C 0.102 3.898 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.254 4.254 27 C -0.086 4.086 28 C -0.071 4.071 29 C -0.114 4.114 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.239 0.761 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.119 0.881 47 H 0.045 0.955 48 H 0.107 0.893 49 H 0.077 0.923 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.389 17.461 13.488 22.323 hybrid contribution -1.743 0.096 -0.140 1.751 sum 1.646 17.557 13.348 22.117 Atomic orbital electron populations 1.21934 0.91381 1.05703 1.04496 1.20843 0.90637 0.83307 0.75064 1.90716 1.70896 1.31420 1.49513 1.45519 1.05960 1.08946 1.74788 1.21786 0.80121 0.96327 1.04085 0.84867 1.23556 1.02782 1.02934 0.92967 1.22031 0.98360 0.97177 0.94706 1.21194 0.94393 1.01948 0.93794 1.22055 0.98242 0.91147 0.95558 1.61783 1.18414 1.38776 1.06603 1.20773 0.99826 0.94220 0.86421 1.19061 0.93143 0.95607 1.10073 1.20446 0.98179 0.91719 0.96741 1.20221 0.92809 0.98179 1.10111 1.19395 0.92623 0.86449 0.91360 1.83981 1.24674 1.26998 1.72489 1.21258 0.78893 0.97078 1.49612 0.89196 1.25277 1.00415 0.94258 0.96527 1.70024 1.35558 1.01136 1.43050 0.85801 0.80694 0.77974 0.79071 1.19525 1.20269 1.19526 1.21104 1.00252 0.93786 1.10232 1.20569 0.94129 0.95978 0.97879 1.22115 0.90439 1.00898 0.93604 1.21139 0.97713 0.97455 0.95084 0.89294 0.88835 0.89147 0.76143 0.88496 0.88009 0.90185 0.91480 0.95235 0.90757 0.95199 0.90837 0.87098 0.86612 0.91965 0.85730 0.88079 0.95527 0.89304 0.92264 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 10.32 36.00 0.37 -0.65 16 2 C 0.51 5.00 7.94 -10.99 -0.09 4.92 16 3 O -0.55 -7.74 16.65 5.55 0.09 -7.65 16 4 N -0.70 -5.80 5.34 -53.90 -0.29 -6.09 16 5 C 0.08 0.75 6.10 -68.03 -0.42 0.34 16 6 H 0.13 1.42 7.40 -51.93 -0.38 1.03 16 7 C -0.18 -1.42 9.92 -26.84 -0.27 -1.68 16 8 C -0.12 -1.07 2.02 -154.54 -0.31 -1.38 16 9 C -0.08 -0.67 5.87 -26.48 -0.16 -0.83 16 10 C 0.06 0.59 5.49 -3.73 -0.02 0.57 16 11 N -0.53 -6.52 4.58 -235.88 -1.08 -7.60 16 12 C 0.11 1.52 5.12 -4.97 -0.03 1.49 16 13 C -0.18 -2.91 4.89 -104.57 -0.51 -3.43 16 14 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 15 C -0.19 -4.04 9.99 -39.40 -0.39 -4.44 16 16 C 0.16 3.70 6.65 -39.10 -0.26 3.44 16 17 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 18 C -0.39 -10.81 9.49 30.89 0.29 -10.52 16 19 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 22 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.23 -4.94 9.17 -39.39 -0.36 -5.30 16 27 C -0.07 -1.17 7.82 -39.61 -0.31 -1.48 16 28 C 0.06 0.68 5.24 -3.74 -0.02 0.66 16 29 C -0.08 -0.75 5.67 -26.48 -0.15 -0.90 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.40 2.53 6.85 -40.82 -0.28 2.25 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 39 H 0.07 0.70 7.95 -51.93 -0.41 0.29 16 40 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.13 2.64 5.64 -52.48 -0.30 2.34 16 46 H 0.10 1.53 7.90 -52.49 -0.41 1.12 16 47 H 0.03 0.32 8.12 -51.93 -0.42 -0.11 16 48 H 0.09 1.22 5.51 -51.93 -0.29 0.94 16 49 H 0.06 0.48 6.19 -51.93 -0.32 0.16 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -32.62 402.07 -10.28 -42.90 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.70 Total: 6.10 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -3.10 Total: -19.51 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.61 Total: -38.05 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.62 -10.28 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016441484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.066 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds