Wall clock time and date at job start Wed Apr 1 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 119.99642 * 2 1 4 4 N 1.34777 * 120.00366 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99689 * 179.97438 * 4 2 1 6 6 H 1.09000 * 115.57792 * 350.73804 * 5 4 2 7 7 C 1.53052 * 117.50415 * 136.46716 * 5 4 2 8 8 C 1.52727 * 59.94711 * 107.46765 * 7 5 4 9 9 C 1.53216 * 117.82767 * 107.74888 * 8 7 5 10 10 C 1.53267 * 108.61497 * 196.96672 * 9 8 7 11 11 N 1.46813 * 109.44941 * 304.40798 * 10 9 8 12 12 C 1.46901 * 110.99743 * 189.19806 * 11 10 9 13 13 C 1.50705 * 109.47189 * 169.99723 * 12 11 10 14 14 C 1.38301 * 119.93137 * 269.72661 * 13 12 11 15 15 C 1.38093 * 120.06869 * 179.72643 * 14 13 12 16 16 C 1.38879 * 119.93076 * 0.54212 * 15 14 13 17 17 O 1.35747 * 120.07103 * 179.74616 * 16 15 14 18 18 C 1.34833 * 117.00267 * 174.44572 * 17 16 15 19 19 H 1.07997 * 119.99537 * 5.06163 * 18 17 16 20 20 C 1.38652 * 120.00261 * 185.05936 * 18 17 16 21 21 N 1.31555 * 120.00129 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99884 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46970 * 60.00258 * 22 20 18 24 24 H 1.48504 * 109.46947 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47088 * 300.00071 * 22 20 18 26 26 C 1.38884 * 119.85894 * 359.73598 * 16 15 14 27 27 C 1.38097 * 119.93286 * 359.97438 * 26 16 15 28 28 C 1.46811 * 111.56081 * 64.83898 * 11 10 9 29 29 C 1.53217 * 117.83629 * 252.24707 * 8 7 5 30 30 H 1.09002 * 109.47302 * 239.99541 * 1 2 3 31 31 H 1.08996 * 109.47509 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.47083 * 120.00252 * 1 2 3 33 33 H 0.96995 * 119.99825 * 359.97438 * 4 2 1 34 34 H 1.09005 * 117.50235 * 359.97438 * 7 5 4 35 35 H 1.09003 * 117.53250 * 214.93267 * 7 5 4 36 36 H 1.08999 * 109.61508 * 77.23159 * 9 8 7 37 37 H 1.08997 * 109.61204 * 316.69987 * 9 8 7 38 38 H 1.09002 * 109.47261 * 64.39736 * 10 9 8 39 39 H 1.08994 * 109.47360 * 184.41082 * 10 9 8 40 40 H 1.09000 * 109.46940 * 289.99933 * 12 11 10 41 41 H 1.08998 * 109.47324 * 49.99957 * 12 11 10 42 42 H 1.08002 * 119.96200 * 0.02562 * 14 13 12 43 43 H 1.08002 * 120.03598 * 180.27638 * 15 14 13 44 44 H 0.96993 * 119.99948 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.03009 * 180.02562 * 26 16 15 46 46 H 1.08000 * 119.96723 * 180.02562 * 27 26 16 47 47 H 1.09000 * 109.47173 * 55.14828 * 28 11 10 48 48 H 1.08994 * 109.47911 * 175.16590 * 28 11 10 49 49 H 1.09001 * 109.61826 * 43.29539 * 29 8 7 50 50 H 1.09003 * 109.75814 * 282.85538 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1670 0.0000 6 1 4.1163 -0.1967 -0.1591 7 6 4.3532 -2.1505 0.9354 8 6 4.3514 -2.3953 -0.5721 9 6 5.6625 -2.1760 -1.3340 10 6 5.3458 -2.0576 -2.8289 11 7 4.6060 -3.2475 -3.2675 12 6 4.4741 -3.2757 -4.7303 13 6 3.9338 -4.6153 -5.1603 14 6 4.8049 -5.6483 -5.4553 15 6 4.3127 -6.8786 -5.8440 16 6 2.9419 -7.0747 -5.9495 17 8 2.4552 -8.2814 -6.3364 18 6 1.1165 -8.4394 -6.3075 19 1 0.4791 -7.6018 -6.0655 20 6 0.5582 -9.6771 -6.5883 21 7 1.3346 -10.6974 -6.8827 22 14 -1.2966 -9.8957 -6.5489 23 1 -1.9234 -8.9859 -7.5411 24 1 -1.6364 -11.3023 -6.8824 25 1 -1.8043 -9.5729 -5.1912 26 6 2.0700 -6.0336 -5.6582 27 6 2.5682 -4.8074 -5.2641 28 6 3.2918 -3.3352 -2.6190 29 6 3.4792 -3.5340 -1.1110 30 1 -0.3634 -0.5139 0.8899 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6960 -2.0072 0.0013 34 1 3.7284 -2.7972 1.5514 35 1 5.2889 -1.8275 1.3918 36 1 6.3287 -3.0224 -1.1670 37 1 6.1381 -1.2586 -0.9871 38 1 4.7398 -1.1684 -3.0027 39 1 6.2756 -1.9796 -3.3922 40 1 3.7903 -2.4889 -5.0487 41 1 5.4509 -3.1146 -5.1864 42 1 5.8709 -5.4939 -5.3768 43 1 4.9933 -7.6862 -6.0700 44 1 0.9441 -11.5633 -7.0788 45 1 1.0034 -6.1832 -5.7389 46 1 1.8907 -3.9976 -5.0370 47 1 2.7362 -2.4146 -2.7979 48 1 2.7389 -4.1793 -3.0309 49 1 2.5080 -3.5166 -0.6163 50 1 3.9670 -4.4910 -0.9259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016441484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:08 Heat of formation + Delta-G solvation = -33.988242 kcal Electronic energy + Delta-G solvation = -29799.350471 eV Core-core repulsion = 25791.767240 eV Total energy + Delta-G solvation = -4007.583231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.32558 -40.78582 -39.91945 -38.62139 -37.16685 -34.51272 -34.21471 -32.31468 -32.06063 -31.64526 -30.50992 -29.41883 -27.44986 -25.71590 -24.40033 -23.50849 -23.35037 -22.61886 -21.75295 -21.55349 -19.81748 -19.70081 -18.78405 -17.96345 -17.41294 -16.63077 -16.50832 -16.38258 -16.22536 -16.18519 -15.74913 -15.48176 -15.32712 -15.14079 -14.89528 -14.74300 -14.38541 -14.19764 -14.13245 -13.73686 -13.54605 -13.46932 -13.28802 -13.20428 -12.98857 -12.88069 -12.72276 -12.62914 -12.34148 -12.25518 -12.19327 -12.14204 -11.98278 -11.67239 -11.31896 -11.15226 -11.06614 -10.76669 -10.65869 -9.72996 -9.66838 -9.20489 -8.85281 -8.45263 -6.13418 0.62817 0.70685 1.35650 1.46284 1.51974 1.54403 2.15225 2.19019 2.74559 2.87074 3.06445 3.34039 3.55581 3.68234 3.72740 3.81671 3.87011 3.94289 4.01709 4.05821 4.23161 4.30805 4.37570 4.45378 4.47962 4.55741 4.60518 4.62509 4.63199 4.65584 4.75762 4.82938 4.85820 4.87708 4.94371 4.97368 5.10218 5.10478 5.11604 5.15399 5.17820 5.30417 5.32706 5.36755 5.51166 5.60661 5.73678 5.83723 6.04754 6.17173 6.24071 6.31141 6.50526 6.99435 7.20703 7.81240 8.77908 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.002418 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.254291 B =11578.984996 C =12988.187510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.600 6.600 4 N -0.692 5.692 5 C 0.073 3.927 6 H 0.116 0.884 7 C -0.169 4.169 8 C -0.121 4.121 9 C -0.074 4.074 10 C 0.060 3.940 11 N -0.540 5.540 12 C 0.116 3.884 13 C -0.150 4.150 14 C -0.046 4.046 15 C -0.206 4.206 16 C 0.114 3.886 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.256 1.256 26 C -0.241 4.241 27 C -0.061 4.061 28 C 0.058 3.942 29 C -0.073 4.073 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.413 0.587 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.272 0.728 45 H 0.117 0.883 46 H 0.131 0.869 47 H 0.029 0.971 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 19.974 15.149 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.297 3.703 3 O -0.481 6.481 4 N -0.343 5.343 5 C -0.033 4.033 6 H 0.134 0.866 7 C -0.207 4.207 8 C -0.123 4.123 9 C -0.112 4.112 10 C -0.068 4.068 11 N -0.264 5.264 12 C -0.011 4.011 13 C -0.152 4.152 14 C -0.065 4.065 15 C -0.225 4.225 16 C 0.064 3.936 17 O -0.140 6.140 18 C -0.489 4.489 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.260 4.260 27 C -0.079 4.079 28 C -0.069 4.069 29 C -0.111 4.111 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.252 0.748 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.110 0.890 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.149 0.851 47 H 0.047 0.953 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.010 19.914 15.157 25.207 hybrid contribution -1.384 -0.366 -0.547 1.532 sum 1.626 19.549 14.610 24.459 Atomic orbital electron populations 1.21949 0.88320 1.06141 1.06386 1.21551 0.92149 0.82733 0.73885 1.90693 1.72153 1.33176 1.52090 1.45489 1.05785 1.09200 1.73841 1.21712 0.80602 0.95708 1.05309 0.86619 1.23613 1.03024 1.01782 0.92293 1.21959 0.98143 0.96511 0.95672 1.21201 0.94444 1.02589 0.92940 1.22103 0.98242 0.89862 0.96550 1.61753 1.18777 1.40173 1.05731 1.20787 1.00898 0.91943 0.87488 1.19537 0.92578 0.96749 1.06289 1.20810 1.00113 0.90382 0.95182 1.20456 0.91822 0.99686 1.10520 1.19927 0.94194 0.86203 0.93280 1.83945 1.25046 1.29452 1.75590 1.21767 0.79368 0.97917 1.49828 0.88124 1.26581 1.06058 0.93554 0.95869 1.70179 1.38104 1.01864 1.45879 0.84670 0.73641 0.78176 0.79879 1.18184 1.19758 1.18015 1.21188 0.99711 0.94587 1.10512 1.20863 0.95338 0.95252 0.96459 1.22080 0.90102 0.99991 0.94773 1.21095 0.98803 0.97201 0.93965 0.86916 0.89215 0.87502 0.74849 0.87588 0.87008 0.90337 0.90113 0.95686 0.89593 0.94244 0.88973 0.83816 0.87154 0.91889 0.86477 0.85075 0.95315 0.91378 0.90556 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.32 71.23 0.74 -0.82 16 2 C 0.51 9.10 7.94 87.66 0.70 9.80 16 3 O -0.60 -16.73 16.65 -3.05 -0.05 -16.78 16 4 N -0.69 -9.94 5.34 -442.82 -2.37 -12.30 16 5 C 0.07 1.18 6.10 44.93 0.27 1.45 16 6 H 0.12 2.34 7.40 -2.39 -0.02 2.32 16 7 C -0.17 -2.14 9.92 30.52 0.30 -1.83 16 8 C -0.12 -1.82 2.02 -52.20 -0.11 -1.92 16 9 C -0.07 -1.10 5.87 30.76 0.18 -0.92 16 10 C 0.06 1.03 5.49 86.41 0.47 1.51 16 11 N -0.54 -11.51 4.58 -900.19 -4.12 -15.63 16 12 C 0.12 2.63 5.12 85.56 0.44 3.07 16 13 C -0.15 -4.53 4.89 -19.83 -0.10 -4.63 16 14 C -0.05 -1.54 9.69 22.25 0.22 -1.32 16 15 C -0.21 -8.72 9.99 22.39 0.22 -8.49 16 16 C 0.11 5.64 6.65 22.58 0.15 5.79 16 17 O -0.23 -14.04 9.76 -22.74 -0.22 -14.26 16 18 C -0.41 -23.87 9.49 67.92 0.64 -23.23 16 19 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 20 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 21 N -0.92 -56.55 13.67 21.61 0.30 -56.25 16 22 Si 1.02 42.30 29.55 68.60 2.03 44.33 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 C -0.24 -10.24 9.17 22.39 0.21 -10.03 16 27 C -0.06 -2.01 7.82 22.25 0.17 -1.84 16 28 C 0.06 1.22 5.24 86.41 0.45 1.68 16 29 C -0.07 -1.24 5.67 30.75 0.17 -1.07 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.41 4.01 6.85 -92.71 -0.64 3.37 16 34 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 38 H 0.02 0.47 8.12 -2.39 -0.02 0.45 16 39 H 0.09 1.30 7.95 -2.39 -0.02 1.28 16 40 H 0.04 0.86 8.07 -2.39 -0.02 0.84 16 41 H 0.09 1.83 7.88 -2.39 -0.02 1.81 16 42 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 43 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 46 H 0.13 3.58 7.90 -2.91 -0.02 3.55 16 47 H 0.03 0.59 8.12 -2.39 -0.02 0.57 16 48 H 0.07 1.71 5.51 -2.39 -0.01 1.70 16 49 H 0.08 1.01 6.19 -2.39 -0.01 1.00 16 50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -76.64 402.07 1.49 -75.15 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.32 Total: 29.42 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 5.61 Total: -33.67 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -6.19 Total: -84.18 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.27 Total: -31.05 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -76.64 1.49 -75.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016441484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.166 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds