Wall clock time and date at job start Wed Apr 1 2020 03:02:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42892 * 109.47347 * 2 1
4 4 C 1.35655 * 117.00338 * 180.02562 * 3 2 1
5 5 C 1.38703 * 120.14693 * 359.97438 * 4 3 2
6 6 C 1.38058 * 120.08273 * 180.02562 * 5 4 3
7 7 C 1.38540 * 120.39208 * 359.97438 * 6 5 4
8 8 C 1.37792 * 120.29836 * 0.05409 * 7 6 5
9 9 C 1.39705 * 119.90745 * 359.92475 * 8 7 6
10 10 C 1.47542 * 120.18841 * 180.32443 * 9 8 7
11 11 O 1.21590 * 119.99901 * 179.72346 * 10 9 8
12 12 N 1.34779 * 119.99928 * 359.72654 * 10 9 8
13 13 C 1.46507 * 119.99701 * 180.02562 * 12 10 9
14 14 H 1.09003 * 115.55025 * 350.67976 * 13 12 10
15 15 C 1.53022 * 117.50075 * 136.41046 * 13 12 10
16 16 C 1.52810 * 117.50006 * 204.99917 * 13 12 10
17 17 C 1.53179 * 117.71575 * 144.89870 * 16 13 12
18 18 C 1.53355 * 108.77022 * 158.88612 * 17 16 13
19 19 N 1.46843 * 108.81436 * 51.30808 * 18 17 16
20 20 C 1.36937 * 120.38041 * 123.11762 * 19 18 17
21 21 H 1.08000 * 120.00592 * 330.66645 * 20 19 18
22 22 C 1.38817 * 119.99427 * 150.66782 * 20 19 18
23 23 N 1.31616 * 120.00177 * 342.82847 * 22 20 19
24 24 Si 1.86798 * 119.99620 * 162.83749 * 22 20 19
25 25 H 1.48496 * 109.47468 * 359.97438 * 24 22 20
26 26 H 1.48498 * 109.47345 * 119.99824 * 24 22 20
27 27 H 1.48507 * 109.47189 * 239.99456 * 24 22 20
28 28 C 1.46843 * 119.23276 * 303.09468 * 19 18 17
29 29 C 1.53191 * 117.71559 * 0.13171 * 16 13 12
30 30 H 1.09000 * 109.46851 * 60.00166 * 1 2 3
31 31 H 1.09003 * 109.47206 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.46914 * 300.00035 * 1 2 3
33 33 H 1.08998 * 109.46914 * 239.99965 * 2 1 3
34 34 H 1.08999 * 109.46663 * 120.00594 * 2 1 3
35 35 H 1.07997 * 119.95884 * 0.02562 * 5 4 3
36 36 H 1.08000 * 119.80306 * 180.02562 * 6 5 4
37 37 H 1.08003 * 119.85331 * 180.02562 * 7 6 5
38 38 H 1.08003 * 120.04632 * 179.97438 * 8 7 6
39 39 H 0.96998 * 120.00297 * 359.97438 * 12 10 9
40 40 H 1.09005 * 117.50017 * 214.95125 * 15 13 12
41 41 H 1.09004 * 117.50858 * 0.02562 * 15 13 12
42 42 H 1.08996 * 109.58792 * 278.67529 * 17 16 13
43 43 H 1.09000 * 109.58757 * 39.10012 * 17 16 13
44 44 H 1.08996 * 109.57887 * 291.50369 * 18 17 16
45 45 H 1.09003 * 109.57760 * 171.10133 * 18 17 16
46 46 H 0.97001 * 120.00103 * 179.97438 * 23 22 20
47 47 H 1.08997 * 109.58085 * 297.11027 * 28 19 18
48 48 H 1.09001 * 109.69414 * 176.77282 * 28 19 18
49 49 H 1.09004 * 109.58560 * 320.90630 * 29 16 13
50 50 H 1.08996 * 109.58271 * 81.32952 * 29 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.3512 1.5250 -0.0005
5 6 4.1990 0.4272 -0.0005
6 6 5.5675 0.6096 -0.0005
7 6 6.1043 1.8868 -0.0011
8 6 5.2769 2.9886 -0.0005
9 6 3.8902 2.8185 -0.0010
10 6 2.9985 3.9939 -0.0076
11 8 1.7922 3.8418 -0.0130
12 7 3.5211 5.2362 -0.0077
13 6 2.6356 6.4034 -0.0137
14 1 1.5791 6.1911 -0.1771
15 6 2.9877 7.5623 0.9215
16 6 3.1903 7.7070 -0.5865
17 6 2.2238 8.6179 -1.3497
18 6 2.7974 10.0400 -1.3691
19 7 4.1848 9.9846 -1.8469
20 6 4.5705 10.7138 -2.9399
21 1 3.8563 10.9398 -3.7178
22 6 5.8797 11.1625 -3.0480
23 7 6.6549 11.1928 -1.9847
24 14 6.5411 11.7235 -4.7024
25 1 5.4781 11.5918 -5.7309
26 1 6.9675 13.1430 -4.6096
27 1 7.7038 10.8813 -5.0821
28 6 5.1539 9.1385 -1.1388
29 6 4.6282 7.6982 -1.1149
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8899
35 1 3.7881 -0.5716 -0.0005
36 1 6.2234 -0.2484 -0.0009
37 1 7.1761 2.0194 -0.0015
38 1 5.6998 3.9824 -0.0006
39 1 4.4835 5.3576 -0.0030
40 1 2.1626 8.1127 1.3737
41 1 3.8784 7.4566 1.5410
42 1 2.1101 8.2558 -2.3714
43 1 1.2545 8.6217 -0.8511
44 1 2.7741 10.4570 -0.3623
45 1 2.2052 10.6637 -2.0387
46 1 7.5699 11.5060 -2.0603
47 1 5.2766 9.4996 -0.1177
48 1 6.1136 9.1685 -1.6546
49 1 5.2542 7.0914 -0.4605
50 1 4.6441 7.2864 -2.1239
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001016952222.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:02
Heat of formation + Delta-G solvation = -0.654650 kcal
Electronic energy + Delta-G solvation = -30065.417020 eV
Core-core repulsion = 26059.279242 eV
Total energy + Delta-G solvation = -4006.137778 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-40.76809 -39.50785 -38.20170 -37.54541 -35.41340 -33.22946 -32.26928 -31.72104
-30.85769 -30.08213 -29.79249 -28.17063 -24.55615 -24.33637 -24.08428 -22.43676
-21.95263 -21.77125 -20.85257 -20.15479 -18.77009 -18.15065 -17.38680 -16.62471
-16.39491 -16.25045 -15.52166 -15.28263 -14.96532 -14.79862 -14.69774 -14.06742
-13.87530 -13.63820 -13.50833 -13.47229 -13.31056 -12.96837 -12.87140 -12.56807
-12.28604 -12.25412 -12.20651 -11.88319 -11.66997 -11.46442 -11.34105 -11.30264
-11.04506 -10.92720 -10.72736 -10.46426 -10.24566 -9.96559 -9.75773 -9.66370
-9.54851 -9.35964 -9.30058 -8.54306 -8.45092 -8.30293 -6.61514 -5.77876
-3.21202 0.63408 1.11443 2.82890 2.90832 3.16980 3.37138 3.45487
3.48042 3.65219 4.27938 4.40629 4.44018 4.50864 4.61555 4.68523
4.75333 4.88515 4.94270 5.01824 5.07205 5.13029 5.20069 5.20811
5.40468 5.41050 5.49555 5.52622 5.55512 5.66806 5.77512 5.86758
5.93545 5.98542 6.09830 6.12906 6.14960 6.18887 6.31672 6.39382
6.48599 6.60199 6.65371 6.70809 6.75627 6.86707 7.03176 7.14764
7.35893 7.63596 7.66687 7.81406 8.36268 8.48052 9.23387 9.86895
10.43883 11.29845
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.015397 B = 0.002412 C = 0.002230
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1818.128491 B =11605.346670 C =12555.436238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.048 3.952
3 O -0.278 6.278
4 C 0.187 3.813
5 C -0.223 4.223
6 C -0.054 4.054
7 C -0.167 4.167
8 C -0.046 4.046
9 C -0.170 4.170
10 C 0.561 3.439
11 O -0.523 6.523
12 N -0.694 5.694
13 C 0.073 3.927
14 H 0.131 0.869
15 C -0.183 4.183
16 C -0.098 4.098
17 C -0.097 4.097
18 C 0.149 3.851
19 N -0.590 5.590
20 C -0.250 4.250
21 H 0.065 0.935
22 C 0.001 3.999
23 N -0.902 5.902
24 Si 0.900 3.100
25 H -0.277 1.277
26 H -0.291 1.291
27 H -0.289 1.289
28 C 0.174 3.826
29 C -0.104 4.104
30 H 0.068 0.932
31 H 0.076 0.924
32 H 0.068 0.932
33 H 0.061 0.939
34 H 0.061 0.939
35 H 0.133 0.867
36 H 0.129 0.871
37 H 0.131 0.869
38 H 0.134 0.866
39 H 0.399 0.601
40 H 0.097 0.903
41 H 0.092 0.908
42 H 0.063 0.937
43 H 0.053 0.947
44 H 0.020 0.980
45 H 0.055 0.945
46 H 0.253 0.747
47 H 0.018 0.982
48 H 0.089 0.911
49 H 0.042 0.958
50 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.569 -23.682 6.733 25.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.027 4.027
3 O -0.189 6.189
4 C 0.138 3.862
5 C -0.242 4.242
6 C -0.073 4.073
7 C -0.185 4.185
8 C -0.065 4.065
9 C -0.174 4.174
10 C 0.349 3.651
11 O -0.399 6.399
12 N -0.345 5.345
13 C -0.033 4.033
14 H 0.149 0.851
15 C -0.222 4.222
16 C -0.100 4.100
17 C -0.137 4.137
18 C 0.023 3.977
19 N -0.312 5.312
20 C -0.380 4.380
21 H 0.082 0.918
22 C -0.197 4.197
23 N -0.547 5.547
24 Si 0.730 3.270
25 H -0.202 1.202
26 H -0.218 1.218
27 H -0.216 1.216
28 C 0.048 3.952
29 C -0.143 4.143
30 H 0.087 0.913
31 H 0.095 0.905
32 H 0.087 0.913
33 H 0.079 0.921
34 H 0.079 0.921
35 H 0.151 0.849
36 H 0.147 0.853
37 H 0.149 0.851
38 H 0.151 0.849
39 H 0.235 0.765
40 H 0.115 0.885
41 H 0.110 0.890
42 H 0.081 0.919
43 H 0.071 0.929
44 H 0.037 0.963
45 H 0.073 0.927
46 H 0.063 0.937
47 H 0.036 0.964
48 H 0.108 0.892
49 H 0.061 0.939
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -5.467 -23.583 6.727 25.126
hybrid contribution 1.163 0.078 -0.702 1.361
sum -4.304 -23.505 6.026 24.644
Atomic orbital electron populations
1.21739 0.92460 1.02478 1.04064 1.22881 0.96472 0.82243 1.01105
1.86391 1.17709 1.28378 1.86471 1.18999 0.83183 0.92570 0.91429
1.21240 0.94395 0.97961 1.10621 1.21124 0.94252 0.97557 0.94348
1.21012 1.00303 0.92108 1.05090 1.21244 0.91228 0.99742 0.94284
1.19397 0.93622 0.91384 1.13014 1.17926 0.87902 0.82544 0.76769
1.90797 1.14367 1.85818 1.48965 1.45304 1.09892 1.04651 1.74638
1.21838 0.95209 0.80684 1.05534 0.85107 1.23531 1.03339 1.01463
0.93826 1.21954 0.98002 0.95749 0.94248 1.21683 0.95545 0.97358
0.99112 1.20862 0.87302 0.92511 0.97050 1.43970 1.04529 1.49873
1.32820 1.19241 0.95344 1.27275 0.96137 0.91759 1.25057 0.98591
0.99081 0.96975 1.70037 1.07741 1.50180 1.26721 0.86255 0.78813
0.77912 0.84004 1.20249 1.21756 1.21595 1.20738 0.94305 0.84661
0.95527 1.21808 0.91741 1.01473 0.99327 0.91285 0.90546 0.91330
0.92061 0.92095 0.84931 0.85340 0.85094 0.84867 0.76488 0.88495
0.88978 0.91852 0.92860 0.96251 0.92685 0.93738 0.96421 0.89243
0.93921 0.92051
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16
2 C 0.05 0.41 5.46 37.16 0.20 0.61 16
3 O -0.28 -3.67 8.21 -40.54 -0.33 -4.01 16
4 C 0.19 2.31 6.70 -38.70 -0.26 2.05 16
5 C -0.22 -2.05 9.03 -39.48 -0.36 -2.40 16
6 C -0.05 -0.43 10.03 -39.54 -0.40 -0.83 16
7 C -0.17 -1.42 10.02 -39.63 -0.40 -1.82 16
8 C -0.05 -0.48 9.54 -39.20 -0.37 -0.85 16
9 C -0.17 -2.23 5.89 -104.85 -0.62 -2.84 16
10 C 0.56 8.77 7.76 -12.47 -0.10 8.67 16
11 O -0.52 -9.85 14.73 -16.59 -0.24 -10.10 16
12 N -0.69 -9.93 5.30 -54.92 -0.29 -10.22 16
13 C 0.07 1.13 6.14 -68.01 -0.42 0.71 16
14 H 0.13 2.15 7.40 -51.93 -0.38 1.77 16
15 C -0.18 -2.75 9.86 -26.80 -0.26 -3.01 16
16 C -0.10 -1.66 1.94 -154.49 -0.30 -1.96 16
17 C -0.10 -1.73 5.83 -26.45 -0.15 -1.88 16
18 C 0.15 3.13 6.52 -3.67 -0.02 3.11 16
19 N -0.59 -14.64 2.93 -172.26 -0.51 -15.15 16
20 C -0.25 -6.83 9.54 -15.06 -0.14 -6.97 16
21 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16
22 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16
23 N -0.90 -25.90 11.21 55.49 0.62 -25.28 16
24 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16
25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16
28 C 0.17 4.04 5.39 -3.67 -0.02 4.02 16
29 C -0.10 -1.92 5.37 -26.45 -0.14 -2.06 16
30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16
32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16
34 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16
35 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16
36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16
37 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16
38 H 0.13 1.15 6.40 -52.48 -0.34 0.82 16
39 H 0.40 4.94 5.15 -40.82 -0.21 4.73 16
40 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16
41 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
43 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16
44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
45 H 0.05 1.14 7.92 -51.93 -0.41 0.72 16
46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16
47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
48 H 0.09 2.33 5.95 -51.93 -0.31 2.02 16
49 H 0.04 0.67 6.75 -51.93 -0.35 0.32 16
50 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
LS Contribution 398.37 15.07 6.00 6.00
Total: -1.00 -33.12 398.37 -10.99 -44.10
By element:
Atomic # 1 Polarization: 12.10 SS G_CDS: -7.75 Total: 4.35 kcal
Atomic # 6 Polarization: -2.80 SS G_CDS: -3.46 Total: -6.26 kcal
Atomic # 7 Polarization: -50.48 SS G_CDS: -0.17 Total: -50.65 kcal
Atomic # 8 Polarization: -13.53 SS G_CDS: -0.58 Total: -14.10 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -33.12 -10.99 -44.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001016952222.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.450 kcal
(2) G-P(sol) polarization free energy of solvation -33.117 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.333 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.655 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds