Wall clock time and date at job start Wed Apr 1 2020 03:02:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42892 * 109.47347 * 2 1
4 4 C 1.35655 * 117.00338 * 180.02562 * 3 2 1
5 5 C 1.38703 * 120.14693 * 359.97438 * 4 3 2
6 6 C 1.38058 * 120.08273 * 180.02562 * 5 4 3
7 7 C 1.38540 * 120.39208 * 359.97438 * 6 5 4
8 8 C 1.37792 * 120.29836 * 0.05409 * 7 6 5
9 9 C 1.39705 * 119.90745 * 359.92475 * 8 7 6
10 10 C 1.47542 * 120.18841 * 180.32443 * 9 8 7
11 11 O 1.21590 * 119.99901 * 179.72346 * 10 9 8
12 12 N 1.34779 * 119.99928 * 359.72654 * 10 9 8
13 13 C 1.46507 * 119.99701 * 180.02562 * 12 10 9
14 14 H 1.09003 * 115.55025 * 350.67976 * 13 12 10
15 15 C 1.53022 * 117.50075 * 136.41046 * 13 12 10
16 16 C 1.52810 * 117.50006 * 204.99917 * 13 12 10
17 17 C 1.53179 * 117.71575 * 144.89870 * 16 13 12
18 18 C 1.53355 * 108.77022 * 158.88612 * 17 16 13
19 19 N 1.46843 * 108.81436 * 51.30808 * 18 17 16
20 20 C 1.36937 * 120.38041 * 123.11762 * 19 18 17
21 21 H 1.08000 * 120.00592 * 330.66645 * 20 19 18
22 22 C 1.38817 * 119.99427 * 150.66782 * 20 19 18
23 23 N 1.31616 * 120.00177 * 342.82847 * 22 20 19
24 24 Si 1.86798 * 119.99620 * 162.83749 * 22 20 19
25 25 H 1.48496 * 109.47468 * 359.97438 * 24 22 20
26 26 H 1.48498 * 109.47345 * 119.99824 * 24 22 20
27 27 H 1.48507 * 109.47189 * 239.99456 * 24 22 20
28 28 C 1.46843 * 119.23276 * 303.09468 * 19 18 17
29 29 C 1.53191 * 117.71559 * 0.13171 * 16 13 12
30 30 H 1.09000 * 109.46851 * 60.00166 * 1 2 3
31 31 H 1.09003 * 109.47206 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.46914 * 300.00035 * 1 2 3
33 33 H 1.08998 * 109.46914 * 239.99965 * 2 1 3
34 34 H 1.08999 * 109.46663 * 120.00594 * 2 1 3
35 35 H 1.07997 * 119.95884 * 0.02562 * 5 4 3
36 36 H 1.08000 * 119.80306 * 180.02562 * 6 5 4
37 37 H 1.08003 * 119.85331 * 180.02562 * 7 6 5
38 38 H 1.08003 * 120.04632 * 179.97438 * 8 7 6
39 39 H 0.96998 * 120.00297 * 359.97438 * 12 10 9
40 40 H 1.09005 * 117.50017 * 214.95125 * 15 13 12
41 41 H 1.09004 * 117.50858 * 0.02562 * 15 13 12
42 42 H 1.08996 * 109.58792 * 278.67529 * 17 16 13
43 43 H 1.09000 * 109.58757 * 39.10012 * 17 16 13
44 44 H 1.08996 * 109.57887 * 291.50369 * 18 17 16
45 45 H 1.09003 * 109.57760 * 171.10133 * 18 17 16
46 46 H 0.97001 * 120.00103 * 179.97438 * 23 22 20
47 47 H 1.08997 * 109.58085 * 297.11027 * 28 19 18
48 48 H 1.09001 * 109.69414 * 176.77282 * 28 19 18
49 49 H 1.09004 * 109.58560 * 320.90630 * 29 16 13
50 50 H 1.08996 * 109.58271 * 81.32952 * 29 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.3512 1.5250 -0.0005
5 6 4.1990 0.4272 -0.0005
6 6 5.5675 0.6096 -0.0005
7 6 6.1043 1.8868 -0.0011
8 6 5.2769 2.9886 -0.0005
9 6 3.8902 2.8185 -0.0010
10 6 2.9985 3.9939 -0.0076
11 8 1.7922 3.8418 -0.0130
12 7 3.5211 5.2362 -0.0077
13 6 2.6356 6.4034 -0.0137
14 1 1.5791 6.1911 -0.1771
15 6 2.9877 7.5623 0.9215
16 6 3.1903 7.7070 -0.5865
17 6 2.2238 8.6179 -1.3497
18 6 2.7974 10.0400 -1.3691
19 7 4.1848 9.9846 -1.8469
20 6 4.5705 10.7138 -2.9399
21 1 3.8563 10.9398 -3.7178
22 6 5.8797 11.1625 -3.0480
23 7 6.6549 11.1928 -1.9847
24 14 6.5411 11.7235 -4.7024
25 1 5.4781 11.5918 -5.7309
26 1 6.9675 13.1430 -4.6096
27 1 7.7038 10.8813 -5.0821
28 6 5.1539 9.1385 -1.1388
29 6 4.6282 7.6982 -1.1149
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8899
35 1 3.7881 -0.5716 -0.0005
36 1 6.2234 -0.2484 -0.0009
37 1 7.1761 2.0194 -0.0015
38 1 5.6998 3.9824 -0.0006
39 1 4.4835 5.3576 -0.0030
40 1 2.1626 8.1127 1.3737
41 1 3.8784 7.4566 1.5410
42 1 2.1101 8.2558 -2.3714
43 1 1.2545 8.6217 -0.8511
44 1 2.7741 10.4570 -0.3623
45 1 2.2052 10.6637 -2.0387
46 1 7.5699 11.5060 -2.0603
47 1 5.2766 9.4996 -0.1177
48 1 6.1136 9.1685 -1.6546
49 1 5.2542 7.0914 -0.4605
50 1 4.6441 7.2864 -2.1239
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001016952222.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:01
Heat of formation + Delta-G solvation = -18.706510 kcal
Electronic energy + Delta-G solvation = -30066.199807 eV
Core-core repulsion = 26059.279242 eV
Total energy + Delta-G solvation = -4006.920566 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.67276 -40.67860 -39.45878 -38.35977 -37.09068 -34.61443 -33.41144 -32.89185
-31.83599 -31.74791 -30.53528 -29.83708 -26.24284 -25.35914 -24.89501 -24.04562
-23.12102 -22.61978 -22.30642 -21.32397 -19.88222 -19.52195 -18.45934 -18.14197
-17.41888 -17.11840 -16.83635 -16.51460 -16.13443 -15.83943 -15.72287 -15.60034
-15.38623 -15.02387 -14.73297 -14.57369 -14.37362 -14.25181 -14.11154 -13.72721
-13.40624 -13.33318 -13.07374 -12.95671 -12.92876 -12.88764 -12.60935 -12.56366
-12.50985 -12.28773 -12.00504 -11.96646 -11.78334 -11.67766 -11.36210 -11.26084
-10.94873 -10.67832 -10.48615 -10.12347 -9.65324 -9.22842 -8.60480 -7.85422
-5.32002 -0.15825 0.39820 1.45799 1.48223 1.58551 1.83585 2.05133
2.22987 2.52100 2.78007 3.01223 3.29261 3.60798 3.66582 3.75189
3.82456 3.86981 3.94989 4.00008 4.03300 4.13375 4.17823 4.23178
4.35087 4.37000 4.47564 4.53058 4.61840 4.71456 4.80736 4.84030
4.85690 4.89756 4.90724 4.95516 5.00838 5.08845 5.12555 5.21754
5.23181 5.30509 5.31951 5.37481 5.45756 5.51520 5.55333 5.66839
5.75759 5.79433 6.39685 6.42644 6.55249 7.17830 7.22528 7.89405
8.40744 9.19648
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.015397 B = 0.002412 C = 0.002230
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1818.128491 B =11605.346670 C =12555.436238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.040 3.960
3 O -0.314 6.314
4 C 0.165 3.835
5 C -0.223 4.223
6 C -0.044 4.044
7 C -0.167 4.167
8 C -0.051 4.051
9 C -0.204 4.204
10 C 0.558 3.442
11 O -0.565 6.565
12 N -0.688 5.688
13 C 0.085 3.915
14 H 0.123 0.877
15 C -0.168 4.168
16 C -0.115 4.115
17 C -0.087 4.087
18 C 0.147 3.853
19 N -0.609 5.609
20 C -0.262 4.262
21 H 0.061 0.939
22 C -0.049 4.049
23 N -0.931 5.931
24 Si 0.963 3.037
25 H -0.270 1.270
26 H -0.292 1.292
27 H -0.288 1.288
28 C 0.181 3.819
29 C -0.088 4.088
30 H 0.052 0.948
31 H 0.107 0.893
32 H 0.054 0.946
33 H 0.077 0.923
34 H 0.079 0.921
35 H 0.158 0.842
36 H 0.165 0.835
37 H 0.158 0.842
38 H 0.144 0.856
39 H 0.408 0.592
40 H 0.110 0.890
41 H 0.101 0.899
42 H 0.052 0.948
43 H 0.080 0.920
44 H 0.019 0.981
45 H 0.052 0.948
46 H 0.250 0.750
47 H 0.000 1.000
48 H 0.057 0.943
49 H 0.070 0.930
50 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.764 -26.210 7.020 27.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.035 4.035
3 O -0.226 6.226
4 C 0.117 3.883
5 C -0.241 4.241
6 C -0.062 4.062
7 C -0.184 4.184
8 C -0.070 4.070
9 C -0.208 4.208
10 C 0.347 3.653
11 O -0.445 6.445
12 N -0.339 5.339
13 C -0.021 4.021
14 H 0.140 0.860
15 C -0.207 4.207
16 C -0.116 4.116
17 C -0.126 4.126
18 C 0.021 3.979
19 N -0.332 5.332
20 C -0.392 4.392
21 H 0.079 0.921
22 C -0.244 4.244
23 N -0.578 5.578
24 Si 0.792 3.208
25 H -0.195 1.195
26 H -0.219 1.219
27 H -0.215 1.215
28 C 0.055 3.945
29 C -0.128 4.128
30 H 0.071 0.929
31 H 0.125 0.875
32 H 0.073 0.927
33 H 0.095 0.905
34 H 0.097 0.903
35 H 0.175 0.825
36 H 0.183 0.817
37 H 0.176 0.824
38 H 0.161 0.839
39 H 0.246 0.754
40 H 0.128 0.872
41 H 0.119 0.881
42 H 0.071 0.929
43 H 0.098 0.902
44 H 0.037 0.963
45 H 0.071 0.929
46 H 0.059 0.941
47 H 0.018 0.982
48 H 0.075 0.925
49 H 0.089 0.911
50 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -4.662 -26.122 7.018 27.447
hybrid contribution 0.907 0.807 -0.759 1.432
sum -3.755 -25.315 6.259 26.347
Atomic orbital electron populations
1.21780 0.92282 1.03975 1.02566 1.23166 0.96719 0.80888 1.02694
1.86348 1.18570 1.30953 1.86773 1.19331 0.83425 0.93299 0.92249
1.21553 0.94728 0.98113 1.09713 1.21608 0.94162 0.98596 0.91847
1.21397 1.01476 0.91799 1.03770 1.21433 0.90266 1.01148 0.94109
1.19403 0.94421 0.90758 1.16178 1.18425 0.87824 0.83368 0.75659
1.90761 1.16200 1.86425 1.51107 1.45247 1.10231 1.04164 1.74275
1.21653 0.94929 0.80631 1.04936 0.85976 1.23618 1.04063 1.00477
0.92509 1.21826 0.96783 0.97188 0.95827 1.21525 0.96810 0.95124
0.99157 1.20976 0.85582 0.94721 0.96617 1.44241 1.06090 1.50167
1.32683 1.19511 0.95609 1.27133 0.96965 0.92096 1.25764 0.98864
0.99788 0.99989 1.70173 1.07760 1.51379 1.28439 0.85270 0.78094
0.77083 0.80373 1.19453 1.21892 1.21474 1.20547 0.93085 0.87228
0.93658 1.21543 0.93279 0.98363 0.99567 0.92881 0.87495 0.92687
0.90473 0.90257 0.82490 0.81723 0.82420 0.83853 0.75382 0.87172
0.88073 0.92905 0.90155 0.96333 0.92950 0.94059 0.98155 0.92487
0.91126 0.93257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16
2 C 0.04 0.63 5.46 71.98 0.39 1.03 16
3 O -0.31 -8.37 8.21 -68.78 -0.56 -8.94 16
4 C 0.17 3.97 6.70 22.84 0.15 4.13 16
5 C -0.22 -3.50 9.03 22.34 0.20 -3.30 16
6 C -0.04 -0.53 10.03 22.30 0.22 -0.31 16
7 C -0.17 -2.30 10.02 22.24 0.22 -2.08 16
8 C -0.05 -0.96 9.54 22.52 0.21 -0.75 16
9 C -0.20 -5.25 5.89 -20.01 -0.12 -5.37 16
10 C 0.56 17.61 7.76 86.70 0.67 18.28 16
11 O -0.57 -21.99 14.73 16.92 0.25 -21.74 16
12 N -0.69 -19.29 5.30 -445.94 -2.36 -21.66 16
13 C 0.08 2.55 6.14 44.93 0.28 2.82 16
14 H 0.12 3.98 7.40 -2.39 -0.02 3.96 16
15 C -0.17 -4.77 9.86 30.55 0.30 -4.46 16
16 C -0.11 -3.78 1.94 -52.17 -0.10 -3.88 16
17 C -0.09 -3.02 5.83 30.77 0.18 -2.84 16
18 C 0.15 6.17 6.52 86.43 0.56 6.73 16
19 N -0.61 -30.75 2.93 -698.90 -2.05 -32.80 16
20 C -0.26 -14.54 9.54 84.03 0.80 -13.74 16
21 H 0.06 3.35 7.89 -2.91 -0.02 3.32 16
22 C -0.05 -2.71 4.90 84.86 0.42 -2.30 16
23 N -0.93 -54.69 11.21 21.65 0.24 -54.45 16
24 Si 0.96 45.00 29.59 68.60 2.03 47.03 16
25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
27 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16
28 C 0.18 8.56 5.39 86.43 0.47 9.03 16
29 C -0.09 -3.23 5.37 30.78 0.17 -3.07 16
30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
33 H 0.08 0.94 7.66 -2.39 -0.02 0.93 16
34 H 0.08 0.93 7.66 -2.39 -0.02 0.91 16
35 H 0.16 1.57 6.30 -2.91 -0.02 1.55 16
36 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16
37 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16
38 H 0.14 2.24 6.40 -2.91 -0.02 2.22 16
39 H 0.41 9.65 5.15 -92.71 -0.48 9.17 16
40 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16
41 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16
42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
43 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16
44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
45 H 0.05 2.18 7.92 -2.39 -0.02 2.16 16
46 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16
47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16
48 H 0.06 3.06 5.95 -2.39 -0.01 3.05 16
49 H 0.07 2.15 6.75 -2.39 -0.02 2.13 16
50 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16
Total: -1.00 -74.84 398.37 3.78 -71.06
By element:
Atomic # 1 Polarization: 22.58 SS G_CDS: 0.47 Total: 23.05 kcal
Atomic # 6 Polarization: -7.32 SS G_CDS: 5.77 Total: -1.54 kcal
Atomic # 7 Polarization: -104.74 SS G_CDS: -4.17 Total: -108.91 kcal
Atomic # 8 Polarization: -30.37 SS G_CDS: -0.32 Total: -30.68 kcal
Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal
Total: -74.84 3.78 -71.06 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001016952222.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.352 kcal
(2) G-P(sol) polarization free energy of solvation -74.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.491 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds