Wall clock time and date at job start Wed Apr 1 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47521 * 2 1 4 4 C 1.35710 * 117.00051 * 179.97438 * 3 2 1 5 5 C 1.38996 * 119.90752 * 180.02562 * 4 3 2 6 6 C 1.37709 * 120.08501 * 179.97438 * 5 4 3 7 7 C 1.39725 * 119.91221 * 0.02562 * 6 5 4 8 8 C 1.47604 * 120.09000 * 180.02562 * 7 6 5 9 9 O 1.21587 * 119.99586 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00227 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99943 * 179.97438 * 10 8 7 12 12 H 1.08999 * 115.56960 * 350.70947 * 11 10 8 13 13 C 1.53039 * 117.50054 * 136.41410 * 11 10 8 14 14 C 1.52818 * 117.50300 * 204.99882 * 11 10 8 15 15 C 1.53185 * 117.71651 * 144.90253 * 14 11 10 16 16 C 1.53340 * 108.88892 * 158.81433 * 15 14 11 17 17 N 1.47161 * 108.64787 * 51.25524 * 16 15 14 18 18 C 1.36943 * 120.31459 * 123.18818 * 17 16 15 19 19 H 1.08001 * 120.00142 * 208.81637 * 18 17 16 20 20 C 1.38817 * 119.99784 * 28.81664 * 18 17 16 21 21 N 1.31621 * 119.99725 * 17.86580 * 20 18 17 22 22 Si 1.86794 * 119.99953 * 197.86110 * 20 18 17 23 23 H 1.48502 * 109.47316 * 60.00272 * 22 20 18 24 24 H 1.48502 * 109.47285 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47337 * 300.00328 * 22 20 18 26 26 C 1.46841 * 119.30788 * 303.16960 * 17 16 15 27 27 C 1.53184 * 117.71198 * 0.14276 * 14 11 10 28 28 C 1.39742 * 119.82667 * 0.27220 * 7 6 5 29 29 C 1.37701 * 119.90471 * 359.42477 * 28 7 6 30 30 H 1.09005 * 109.47052 * 60.00034 * 1 2 3 31 31 H 1.09004 * 109.47454 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47016 * 299.99932 * 1 2 3 33 33 H 1.09000 * 109.47016 * 240.00068 * 2 1 3 34 34 H 1.09004 * 109.46803 * 120.00455 * 2 1 3 35 35 H 1.07998 * 119.96213 * 0.02562 * 5 4 3 36 36 H 1.08004 * 120.03942 * 180.02562 * 6 5 4 37 37 H 0.97003 * 119.99790 * 0.02562 * 10 8 7 38 38 H 1.08993 * 117.50413 * 0.02562 * 13 11 10 39 39 H 1.08990 * 117.52822 * 214.94181 * 13 11 10 40 40 H 1.08999 * 109.58662 * 278.66911 * 15 14 11 41 41 H 1.08998 * 109.58560 * 38.95216 * 15 14 11 42 42 H 1.09001 * 109.58238 * 171.18247 * 16 15 14 43 43 H 1.09004 * 109.57876 * 291.58146 * 16 15 14 44 44 H 0.97005 * 119.99063 * 179.97438 * 21 20 18 45 45 H 1.09006 * 109.57791 * 297.11524 * 26 17 16 46 46 H 1.08997 * 109.58785 * 176.70599 * 26 17 16 47 47 H 1.08999 * 109.58811 * 320.90367 * 27 14 11 48 48 H 1.08995 * 109.59276 * 81.19554 * 27 14 11 49 49 H 1.07996 * 120.04387 * 179.72599 * 28 7 6 50 50 H 1.08004 * 119.95469 * 180.29580 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5249 0.0005 5 6 3.8811 2.8102 0.0011 6 6 5.2457 2.9948 0.0022 7 6 6.0985 1.8880 0.0022 8 6 7.5619 2.0813 0.0039 9 8 8.0266 3.2048 0.0049 10 7 8.3828 1.0124 0.0034 11 6 9.8352 1.2043 0.0045 12 1 10.1746 2.2281 -0.1530 13 6 10.6640 0.3212 0.9401 14 6 10.6961 0.0795 -0.5689 15 6 11.9695 0.4715 -1.3248 16 6 12.9243 -0.7282 -1.3447 17 7 12.1889 -1.9069 -1.8301 18 6 12.6366 -2.5987 -2.9239 19 1 11.9351 -3.1250 -3.5542 20 6 13.9920 -2.6235 -3.2224 21 7 14.8747 -2.3001 -2.3012 22 14 14.5632 -3.1160 -4.9313 23 1 13.9924 -2.1799 -5.9329 24 1 16.0460 -3.0628 -4.9922 25 1 14.1052 -4.4972 -5.2275 26 6 10.9709 -2.3331 -1.1293 27 6 9.9793 -1.1635 -1.1053 28 6 5.5625 0.5975 -0.0047 29 6 4.1968 0.4213 0.0006 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.2213 3.6652 0.0015 36 1 5.6562 3.9938 0.0031 37 1 8.0120 0.1161 0.0015 38 1 10.1286 -0.4028 1.5542 39 1 11.5487 0.7635 1.3979 40 1 11.7156 0.7534 -2.3467 41 1 12.4487 1.3117 -0.8224 42 1 13.7623 -0.5172 -2.0089 43 1 13.2934 -0.9180 -0.3367 44 1 15.8219 -2.3178 -2.5098 45 1 11.2194 -2.6223 -0.1081 46 1 10.5254 -3.1791 -1.6525 47 1 9.1394 -1.4098 -0.4558 48 1 9.6161 -0.9689 -2.1144 49 1 6.2184 -0.2605 -0.0092 50 1 3.7816 -0.5757 0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016955857.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:07 Heat of formation + Delta-G solvation = -22.379546 kcal Electronic energy + Delta-G solvation = -29369.976872 eV Core-core repulsion = 25362.897032 eV Total energy + Delta-G solvation = -4007.079840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59560 -40.84423 -39.78206 -38.13397 -37.09581 -34.64082 -33.49167 -32.82039 -31.98590 -31.67110 -30.74896 -29.80378 -26.23095 -25.40044 -24.63938 -24.03552 -23.36862 -22.79474 -22.08079 -21.42680 -19.83189 -19.49805 -18.77927 -18.17430 -17.54873 -17.08983 -16.82585 -16.54957 -16.13374 -15.94894 -15.74888 -15.39401 -15.17230 -14.99917 -14.80953 -14.62126 -14.41307 -14.29823 -14.12848 -13.77400 -13.72689 -13.31193 -13.19519 -13.09758 -12.93468 -12.87105 -12.64634 -12.55585 -12.53145 -12.27667 -12.02545 -11.78538 -11.77268 -11.66224 -11.39706 -11.27855 -11.12569 -10.70112 -10.46145 -10.13993 -9.75133 -9.27699 -8.60974 -7.85010 -5.30636 -0.16676 0.28544 1.46733 1.49687 1.55926 1.74948 2.01096 2.16142 2.52459 2.74317 3.00001 3.29877 3.61364 3.66514 3.68620 3.80853 3.83181 3.88017 3.99124 4.08144 4.10494 4.13729 4.19322 4.35393 4.40020 4.51224 4.53560 4.61239 4.73835 4.84128 4.85684 4.90189 4.91902 4.94513 4.96298 5.03691 5.07391 5.09041 5.16870 5.16966 5.28209 5.31818 5.31926 5.39255 5.48392 5.56475 5.61671 5.66860 5.78477 6.34001 6.42235 6.48667 7.15782 7.17315 7.90008 8.41152 9.19963 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.002046 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.898835 B =13683.105869 C =14740.470298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.325 6.325 4 C 0.154 3.846 5 C -0.168 4.168 6 C -0.028 4.028 7 C -0.192 4.192 8 C 0.562 3.438 9 O -0.584 6.584 10 N -0.682 5.682 11 C 0.083 3.917 12 H 0.119 0.881 13 C -0.168 4.168 14 C -0.113 4.113 15 C -0.095 4.095 16 C 0.182 3.818 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.145 3.855 27 C -0.083 4.083 28 C -0.038 4.038 29 C -0.214 4.214 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.412 0.588 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.001 0.999 44 H 0.249 0.751 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.086 0.914 48 H 0.056 0.944 49 H 0.152 0.848 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.346 4.405 7.787 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.239 6.239 4 C 0.107 3.893 5 C -0.186 4.186 6 C -0.047 4.047 7 C -0.195 4.195 8 C 0.352 3.648 9 O -0.466 6.466 10 N -0.332 5.332 11 C -0.023 4.023 12 H 0.136 0.864 13 C -0.206 4.206 14 C -0.115 4.115 15 C -0.134 4.134 16 C 0.056 3.944 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.579 5.579 22 Si 0.792 3.208 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.020 3.980 27 C -0.122 4.122 28 C -0.056 4.056 29 C -0.232 4.232 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.251 0.749 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.019 0.981 44 H 0.058 0.942 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.075 0.925 49 H 0.169 0.831 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -28.037 5.285 7.778 29.572 hybrid contribution 1.016 -0.703 -0.863 1.507 sum -27.021 4.582 6.915 28.266 Atomic orbital electron populations 1.21820 0.91631 1.04209 1.03198 1.23175 0.96885 0.80378 1.02882 1.86050 1.18470 1.31863 1.87481 1.19425 0.82962 0.94354 0.92573 1.20542 0.94600 0.95928 1.07538 1.21104 0.92070 0.98956 0.92536 1.19752 0.91482 0.95506 1.12786 1.18527 0.87133 0.84084 0.75022 1.90740 1.78270 1.25173 1.52370 1.45184 1.04888 1.09469 1.73634 1.21644 0.78810 0.96825 1.04997 0.86356 1.23623 1.01991 1.02450 0.92531 1.21809 0.97233 0.96683 0.95773 1.21631 0.94780 0.98223 0.98780 1.20571 0.93068 0.84914 0.95873 1.44306 1.27343 1.29274 1.32277 1.19471 0.90612 1.27293 1.01861 0.91715 1.25774 0.96415 1.01451 1.01016 1.70177 1.00537 1.54134 1.33022 0.85405 0.76392 0.78425 0.80618 1.20727 1.22150 1.19967 1.21004 0.87058 0.95138 0.94791 1.21465 0.97126 0.93276 1.00375 1.21331 0.95510 0.95772 0.93012 1.21456 0.93453 0.99433 1.08872 0.91933 0.88243 0.91809 0.90607 0.90421 0.83320 0.84588 0.74930 0.87021 0.88090 0.93473 0.91607 0.92859 0.98093 0.94177 0.96323 0.92567 0.89615 0.92508 0.83086 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 71.98 0.74 -0.12 16 2 C 0.04 0.33 5.45 71.98 0.39 0.72 16 3 O -0.33 -4.78 10.12 -90.31 -0.91 -5.69 16 4 C 0.15 2.46 6.70 22.63 0.15 2.61 16 5 C -0.17 -2.91 9.97 22.33 0.22 -2.69 16 6 C -0.03 -0.57 9.58 22.50 0.22 -0.36 16 7 C -0.19 -4.12 5.87 -20.08 -0.12 -4.24 16 8 C 0.56 15.24 7.76 86.72 0.67 15.92 16 9 O -0.58 -20.44 15.91 -3.99 -0.06 -20.50 16 10 N -0.68 -16.15 5.30 -445.86 -2.36 -18.51 16 11 C 0.08 2.33 6.14 44.94 0.28 2.60 16 12 H 0.12 3.74 7.40 -2.39 -0.02 3.72 16 13 C -0.17 -4.45 9.87 30.56 0.30 -4.15 16 14 C -0.11 -3.55 1.94 -52.17 -0.10 -3.65 16 15 C -0.09 -3.63 5.82 30.77 0.18 -3.45 16 16 C 0.18 8.74 5.41 86.37 0.47 9.20 16 17 N -0.61 -30.09 2.94 -698.07 -2.05 -32.14 16 18 C -0.26 -14.32 9.54 84.03 0.80 -13.52 16 19 H 0.07 3.44 7.89 -2.91 -0.02 3.41 16 20 C -0.05 -2.86 4.89 84.86 0.41 -2.44 16 21 N -0.93 -55.26 11.22 21.65 0.24 -55.02 16 22 Si 0.96 44.97 29.59 68.60 2.03 47.00 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.15 5.68 6.52 86.44 0.56 6.25 16 27 C -0.08 -2.52 5.37 30.78 0.17 -2.35 16 28 C -0.04 -0.58 9.53 22.51 0.21 -0.37 16 29 C -0.21 -2.85 9.01 22.32 0.20 -2.65 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.08 0.46 7.65 -2.39 -0.02 0.44 16 34 H 0.08 0.43 7.65 -2.38 -0.02 0.42 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.14 2.91 7.64 -2.91 -0.02 2.89 16 37 H 0.41 7.36 5.14 -92.71 -0.48 6.88 16 38 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 42 H 0.05 2.94 5.95 -2.39 -0.01 2.93 16 43 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 44 H 0.25 14.37 8.31 -92.70 -0.77 13.59 16 45 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 47 H 0.09 1.87 6.75 -2.39 -0.02 1.85 16 48 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.15 1.56 6.39 -2.91 -0.02 1.54 16 50 H 0.16 1.22 6.28 -2.91 -0.02 1.20 16 Total: -1.00 -71.64 400.47 3.11 -68.52 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.47 Total: 19.02 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.76 Total: -2.67 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.17 Total: -105.68 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.98 Total: -26.19 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.64 3.11 -68.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016955857.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.145 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds