Wall clock time and date at job start Wed Apr 1 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47497 * 2 1 4 4 C 1.35653 * 117.00463 * 180.02562 * 3 2 1 5 5 C 1.38717 * 120.14573 * 0.02562 * 4 3 2 6 6 C 1.38051 * 120.07811 * 179.97438 * 5 4 3 7 7 C 1.38549 * 120.39828 * 0.02562 * 6 5 4 8 8 C 1.37792 * 120.29488 * 359.67481 * 7 6 5 9 9 C 1.39711 * 119.90814 * 0.60047 * 8 7 6 10 10 C 1.47537 * 120.19319 * 179.69491 * 9 8 7 11 11 O 1.21581 * 120.00154 * 179.72746 * 10 9 8 12 12 N 1.34778 * 119.99403 * 359.73035 * 10 9 8 13 13 C 1.46505 * 119.99520 * 179.97438 * 12 10 9 14 14 C 1.53154 * 109.43294 * 119.95861 * 13 12 10 15 15 C 1.53695 * 108.87244 * 66.17738 * 14 13 12 16 16 H 1.09002 * 112.09766 * 188.24913 * 15 14 13 17 17 C 1.54602 * 107.83434 * 312.22525 * 15 14 13 18 18 C 1.54308 * 104.75310 * 88.67307 * 17 15 14 19 19 C 1.54616 * 104.75039 * 359.97438 * 18 17 15 20 20 H 1.08990 * 112.19236 * 146.79834 * 19 18 17 21 21 C 1.53142 * 109.43567 * 240.18241 * 13 12 10 22 22 N 1.48293 * 104.25894 * 25.14100 * 19 18 17 23 23 C 1.36935 * 128.21084 * 138.42751 * 22 19 18 24 24 H 1.08002 * 119.99940 * 195.29809 * 23 22 19 25 25 C 1.38811 * 120.00161 * 15.29970 * 23 22 19 26 26 N 1.31621 * 119.99450 * 9.24587 * 25 23 22 27 27 Si 1.86790 * 120.00095 * 189.24840 * 25 23 22 28 28 H 1.48504 * 109.47462 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47620 * 120.00020 * 27 25 23 30 30 H 1.48507 * 109.47076 * 239.99904 * 27 25 23 31 31 H 1.09003 * 109.47120 * 300.00333 * 1 2 3 32 32 H 1.08997 * 109.47004 * 59.99694 * 1 2 3 33 33 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47120 * 239.99667 * 2 1 3 35 35 H 1.09005 * 109.47359 * 120.00370 * 2 1 3 36 36 H 1.07993 * 119.95699 * 359.96103 * 5 4 3 37 37 H 1.08012 * 119.79983 * 180.02562 * 6 5 4 38 38 H 1.07994 * 119.85652 * 179.97438 * 7 6 5 39 39 H 1.07996 * 120.04845 * 180.32141 * 8 7 6 40 40 H 0.96998 * 120.00366 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.39913 * 0.07181 * 13 12 10 42 42 H 1.09005 * 109.56625 * 185.99347 * 14 13 12 43 43 H 1.09001 * 109.57122 * 306.35700 * 14 13 12 44 44 H 1.08999 * 110.38296 * 207.49018 * 17 15 14 45 45 H 1.08997 * 110.38622 * 329.73817 * 17 15 14 46 46 H 1.09000 * 110.38946 * 118.81215 * 18 17 15 47 47 H 1.08998 * 110.38258 * 241.18363 * 18 17 15 48 48 H 1.08997 * 109.56990 * 53.64522 * 21 13 12 49 49 H 1.08997 * 109.57331 * 174.00627 * 21 13 12 50 50 H 0.97005 * 119.99501 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3512 1.5250 -0.0005 5 6 4.1990 0.4271 -0.0016 6 6 5.5674 0.6096 -0.0027 7 6 6.1043 1.8868 -0.0022 8 6 5.2769 2.9886 -0.0074 9 6 3.8902 2.8185 -0.0004 10 6 2.9985 3.9939 0.0009 11 8 1.7922 3.8418 0.0019 12 7 3.5212 5.2362 0.0009 13 6 2.6357 6.4034 0.0016 14 6 2.9030 7.2449 1.2530 15 6 4.3203 7.8326 1.1635 16 1 4.6205 8.3222 2.0899 17 6 5.2830 6.6890 0.7690 18 6 5.2808 6.6882 -0.7741 19 6 4.3163 7.8311 -1.1670 20 1 4.6194 8.3268 -2.0891 21 6 2.8991 7.2436 -1.2513 22 7 4.3436 8.7486 -0.0023 23 6 4.3808 10.1174 -0.0030 24 1 4.6440 10.6509 0.8984 25 6 4.0803 10.8193 -1.1623 26 7 3.5854 10.1866 -2.2049 27 14 4.3783 12.6615 -1.2425 28 1 4.9358 13.1297 0.0519 29 1 5.3406 12.9604 -2.3333 30 1 3.0950 13.3594 -1.5096 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.7881 -0.5716 -0.0014 37 1 6.2234 -0.2485 -0.0039 38 1 7.1761 2.0194 -0.0026 39 1 5.6997 3.9824 -0.0122 40 1 4.4835 5.3575 0.0004 41 1 1.5978 6.0704 0.0034 42 1 2.1751 8.0543 1.3109 43 1 2.8237 6.6161 2.1397 44 1 6.2855 6.8893 1.1470 45 1 4.9174 5.7360 1.1513 46 1 6.2821 6.8882 -1.1554 47 1 4.9129 5.7346 -1.1527 48 1 2.8172 6.6139 -2.1372 49 1 2.1712 8.0529 -1.3080 50 1 3.3757 10.6770 -3.0152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021451030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:44 Heat of formation + Delta-G solvation = 56.339316 kcal Electronic energy + Delta-G solvation = -31774.603330 eV Core-core repulsion = 27770.936996 eV Total energy + Delta-G solvation = -4003.666334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.22200 -40.16752 -38.04871 -37.37278 -34.12751 -32.25672 -32.13651 -31.75740 -30.60242 -30.16548 -29.66870 -28.85466 -24.88809 -24.26397 -23.51832 -23.27319 -21.78216 -21.40668 -20.20245 -19.59212 -19.50177 -18.31552 -17.44557 -16.77042 -16.25499 -16.02824 -15.31765 -15.00083 -14.75608 -14.41105 -14.38646 -14.15993 -13.60232 -13.40435 -13.32761 -13.03298 -12.87821 -12.76010 -12.71602 -12.28586 -12.21522 -11.96483 -11.91541 -11.74344 -11.62234 -11.54212 -11.14391 -10.94274 -10.92073 -10.90397 -10.63515 -10.33270 -10.23832 -10.02237 -9.69652 -9.47387 -9.33747 -9.26541 -9.19879 -8.61825 -8.37460 -8.03910 -6.82298 -5.77968 -3.12868 0.81027 1.25155 3.05818 3.09478 3.37702 3.44621 3.46386 3.71148 3.91996 4.45535 4.55002 4.61513 4.72709 4.84261 4.91095 5.02184 5.08837 5.15126 5.24635 5.25860 5.34580 5.44228 5.52324 5.59550 5.63658 5.66455 5.70874 5.83822 5.88165 5.91160 6.01837 6.04536 6.06913 6.10924 6.21136 6.26605 6.33503 6.52941 6.55704 6.58450 6.62577 6.71404 6.82587 6.92524 7.05630 7.20201 7.31663 7.54064 7.56956 7.74258 8.04945 8.21595 8.74166 9.12161 9.74334 10.52787 11.34567 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.002939 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.664086 B = 9525.414604 C =10270.415082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.276 6.276 4 C 0.184 3.816 5 C -0.223 4.223 6 C -0.059 4.059 7 C -0.167 4.167 8 C -0.053 4.053 9 C -0.165 4.165 10 C 0.539 3.461 11 O -0.534 6.534 12 N -0.735 5.735 13 C 0.143 3.857 14 C -0.138 4.138 15 C 0.150 3.850 16 H 0.068 0.932 17 C -0.164 4.164 18 C -0.176 4.176 19 C 0.184 3.816 20 H 0.111 0.889 21 C -0.124 4.124 22 N -0.583 5.583 23 C -0.224 4.224 24 H 0.076 0.924 25 C -0.005 4.005 26 N -0.910 5.910 27 Si 0.909 3.091 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.425 0.575 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.043 0.957 49 H 0.085 0.915 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -21.237 4.332 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.187 6.187 4 C 0.135 3.865 5 C -0.242 4.242 6 C -0.077 4.077 7 C -0.185 4.185 8 C -0.072 4.072 9 C -0.169 4.169 10 C 0.326 3.674 11 O -0.412 6.412 12 N -0.408 5.408 13 C 0.039 3.961 14 C -0.178 4.178 15 C 0.042 3.958 16 H 0.086 0.914 17 C -0.204 4.204 18 C -0.216 4.216 19 C 0.077 3.923 20 H 0.129 0.871 21 C -0.164 4.164 22 N -0.304 5.304 23 C -0.352 4.352 24 H 0.093 0.907 25 C -0.202 4.202 26 N -0.557 5.557 27 Si 0.740 3.260 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.285 0.715 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.104 0.896 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.910 -20.909 4.190 21.410 hybrid contribution 0.618 0.662 -0.110 0.912 sum 2.528 -20.247 4.081 20.809 Atomic orbital electron populations 1.21732 0.92542 1.02348 1.04098 1.22864 0.96432 0.82444 1.00973 1.86414 1.17728 1.28082 1.86509 1.19026 0.83154 0.92622 0.91662 1.21228 0.94403 0.97895 1.10692 1.21080 0.94227 0.97442 0.94972 1.20982 1.00153 0.92118 1.05231 1.21291 0.91435 0.99684 0.94774 1.19574 0.93713 0.91836 1.11753 1.18242 0.87954 0.83778 0.77452 1.90755 1.14526 1.86284 1.49670 1.48943 1.13397 1.04991 1.73452 1.21075 0.94306 0.84247 0.96447 1.22513 1.00499 0.98873 0.95956 1.21504 0.91747 0.89994 0.92518 0.91363 1.23314 1.00691 0.99957 0.96422 1.23484 1.01789 1.01207 0.95112 1.21452 0.90088 0.86841 0.93964 0.87125 1.22355 1.01759 0.98251 0.94005 1.45161 1.84984 1.00756 0.99470 1.19024 1.39294 0.79530 0.97332 0.90657 1.24840 1.00268 0.97840 0.97227 1.69879 1.47415 1.34327 1.04044 0.86092 0.77368 0.85138 0.77391 1.20539 1.21785 1.21834 0.91334 0.91284 0.90653 0.92172 0.92203 0.85064 0.85481 0.85236 0.85088 0.71542 0.89875 0.90813 0.93395 0.92039 0.90419 0.92112 0.90533 0.93828 0.89613 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.47 5.46 37.16 0.20 0.68 16 3 O -0.28 -4.09 8.21 -40.54 -0.33 -4.42 16 4 C 0.18 2.57 6.70 -38.69 -0.26 2.31 16 5 C -0.22 -2.33 9.03 -39.47 -0.36 -2.69 16 6 C -0.06 -0.53 10.03 -39.54 -0.40 -0.93 16 7 C -0.17 -1.63 10.02 -39.63 -0.40 -2.03 16 8 C -0.05 -0.65 9.54 -39.19 -0.37 -1.02 16 9 C -0.16 -2.49 5.89 -104.84 -0.62 -3.11 16 10 C 0.54 9.81 7.76 -12.47 -0.10 9.72 16 11 O -0.53 -11.44 14.48 -16.58 -0.24 -11.68 16 12 N -0.73 -12.76 2.73 -54.70 -0.15 -12.91 16 13 C 0.14 2.80 3.15 -67.77 -0.21 2.59 16 14 C -0.14 -2.65 5.49 -26.29 -0.14 -2.79 16 15 C 0.15 2.98 4.32 -65.75 -0.28 2.69 16 16 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 17 C -0.16 -2.73 5.69 -25.20 -0.14 -2.88 16 18 C -0.18 -3.14 5.69 -25.20 -0.14 -3.29 16 19 C 0.18 4.10 3.13 -65.76 -0.21 3.90 16 20 H 0.11 2.84 6.36 -51.93 -0.33 2.51 16 21 C -0.12 -2.68 5.40 -26.32 -0.14 -2.82 16 22 N -0.58 -13.86 2.82 -152.82 -0.43 -14.29 16 23 C -0.22 -5.92 10.38 -15.06 -0.16 -6.07 16 24 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 25 C 0.00 -0.12 5.42 -17.43 -0.09 -0.22 16 26 N -0.91 -25.29 10.59 55.49 0.59 -24.71 16 27 Si 0.91 21.45 29.56 -169.99 -5.03 16.43 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 35 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 36 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.47 5.81 -52.49 -0.30 1.17 16 40 H 0.42 6.65 0.15 -65.43 -0.01 6.64 16 41 H 0.08 1.74 6.89 -51.93 -0.36 1.38 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.18 5.02 -51.93 -0.26 0.92 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 1.27 4.99 -51.93 -0.26 1.01 16 48 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.09 2.12 7.99 -51.93 -0.41 1.70 16 50 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -31.64 377.47 -10.60 -42.24 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -7.26 Total: 10.55 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.44 Total: -6.90 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.01 Total: -51.90 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.57 Total: -16.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.64 -10.60 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021451030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.581 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds